| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004C10 | Sequence | 562 | 012813 (8) | ref|XP_009781430.1| | 5e-41 | PREDICTED: cell number regulator 8-like [Nicotiana sylvestris] | 770 | 012813 (8) | emb|CDP06719.1| | 8e-85 | unnamed protein product [Coffea canephora] |
| JMFF014D20 | Sequence | 575 | 012813 (8) | ref|XP_009781430.1| | 2e-47 | PREDICTED: cell number regulator 8-like [Nicotiana sylvestris] | 698 | 012813 (8) | ref|XP_002525168.1| | 4e-106 | conserved hypothetical protein [Ricinus communis] gb|EEF37134.1| conserved hypot |
| JMFF044P19 | Sequence | 598 | 012813 (8) | emb|CDP06719.1| | 1e-88 | unnamed protein product [Coffea canephora] | 605 | 012813 (8) | ref|XP_002525168.1| | 7e-80 | conserved hypothetical protein [Ricinus communis] gb|EEF37134.1| conserved hypot |
| JMSF048K18 | Sequence | 712 | 012813 (8) | emb|CDP06719.1| | 3e-108 | unnamed protein product [Coffea canephora] | 741 | 012813 (8) | emb|CDP06719.1| | 1e-115 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMFF044P19- GGACAGAAACAATCTTCTTTATTCCAACTTTGTGTAATTCA
rJMFF014D20- ACTTTGTGTAATTCA
rJMFF004C10- ACTTTGTGTAATTCA
____________________________________________________________
consensus GGACAGAAACAATCTTCTTTATTCCAACTTTGTGTAATTCA
. : . : . : . : . : . :
rJMFF044P19- TACGTTGAACCCATATGGTACTAAAATGATACATGTCTTATTTATAAATATGATGATCTA
rJMFF014D20- TACGTTGAACCCATATGGTACTAAAATGATACATGTCTTATTTATAAATATGATGATCTA
rJMSF048K18- AACCCATATGGTACTAAAATGATACATGTCTTATTTATAAATATGATGATCTA
rJMFF004C10- TACGTTGAACCCATATGGTACTAAAATGATACATGTCTTATTTATAAATATGATGATCTA
____________________________________________________________
consensus TACGTTGAACCCATATGGTACTAAAATGATACATGTCTTATTTATAAATATGATGATCTA
. : . : . : . : . : . :
rJMFF044P19- AAAAGACAAAGAAAGTATACTCAGTGCAGGCTTAATTGGCAATAGAAGAACAACAATCAG
rJMFF014D20- AAAAGACAAAGAAAGTATACTCAGTGCAGGCTTAATTGGCAATAGAAGAACAACAATCAG
rJMSF048K18- AAAAGACAAAGAAAGTATACTCAGTGCAGGCTTAATTGGCAATAGAAGAACAACAATCAG
rJMFF004C10- AAAAGACAAAGAAAGTATACTCAGTGCAGGCTTAATTGGCAATAGAAGAACAACAATCAG
____________________________________________________________
consensus AAAAGACAAAGAAAGTATACTCAGTGCAGGCTTAATTGGCAATAGAAGAACAACAATCAG
. : . : . : . : . : . :
rJMFF044P19- GTAATGCAGAACCATATCTATGAATGGACAATCATTGCGCTTAGCGACCCATTGTCTGTT
rJMFF014D20- GTAATGCAGAACCATATCTATGAATGGACAATCATTGCGCTTAGCGACCCATTGTCTGTT
rJMSF048K18- GTAATGCAGAACCATATCTATGAATGGACAATCATTGCGCTTAGCGACCCATTGTCTGTT
rJMFF004C10- GTAATGCAGAACCATATCTATGAATGGACAATCATTGCGCTTAGCGACCCATTGTCTGTT
____________________________________________________________
consensus GTAATGCAGAACCATATCTATGAATGGACAATCATTGCGCTTAGCGACCCATTGTCTGTT
. : . : . : . : . : . :
rJMFF044P19- CTCCGGGAGGGATCATGACCAAGACGGGTTGGGCGTTGAACCCGGGATGGGGAAGCCTAC
rJMFF014D20- CTCCGGGAGGGATCATGACCAAGACGGGTTGGGCGTTGAACCCGGGATGGGGAAGCCTAC
rJMSF048K18- CTCCGGGAGGGATCATGACCAAGACGGGTTGGGCGTTGAACCCGGGATGGGGAAGCCTAC
rJMFF004C10- CTCCGGGAGGGATCATGACCAAGACGGGTTGGGCGTTGAACCCGGGATGGGGAAGCCTAC
JMSF048K18+ AC
____________________________________________________________
consensus CTCCGGGAGGGATCATGACCAAGACGGGTTGGGCGTTGAACCCGGGATGGGGAAGCCTAC
. : . : . : . : . : . :
rJMFF044P19- GACGAACTTCACGAGCTTCCTGACACAGGGCGCATAGGTGGCAAAAGACGTGAGTTCCCA
rJMFF014D20- GACGAACTTCACGAGCTTCCTGACACAGGGCGCATAGGTGGCAAAAGACGTGAGTTCCCA
rJMSF048K18- GACGAACTTCACGAGCTTCCTGACACAGGGCGCATAGGTGGCAAAAGACGTGAGTTCCCA
rJMFF004C10- GACGAACTTCACGAGCTTCCTGACACAGGGCGCATAGGTGGCAAAAGACGTGAGTTCCCA
JMSF048K18+ GACGAACTTCACGAGCTTCCTGACACAGGGCGCATAGGTGGCAAAAGACGTGAGTTCCCA
____________________________________________________________
consensus GACGAACTTCACGAGCTTCCTGACACAGGGCGCATAGGTGGCAAAAGACGTGAGTTCCCA
. : . : . : . : . : . :
rJMFF044P19- AGTCACAAGCAGATTCACACTGTTCGCGTTGCAAATCATCTTCCACAAAGCTCCCACCAC
rJMFF014D20- AGTCACAAGCAGATTCACACTGTTCGCGTTGCAAATCATCTTCCACAAAGCTCCCACCAC
rJMSF048K18- AGTCACAAGCAGATTCACACTGTTCGCGTTGCAAATCATCTTCCACAAAGCTCCCACCAC
rJMFF004C10- AGTCACAAGCAGATTCACACTGTTCGCGTTGCAAATCATCTTCCACAAAGCTCCCACCAC
JMFF044P19+ CGCGTTGCAAATCATCTTCCACAAAGCTCCCACCAC
JMSF048K18+ AGTCACAAGCAGATTCACACTGTTCGCGTTGCAAATCATCTTCCACAAAGCTCCCACCAC
____________________________________________________________
consensus AGTCACAAGCAGATTCACACTGTTCGCGTTGCAAATCATCTTCCACAAAGCTCCCACCAC
. : . : . : . : . : . :
rJMFF044P19- ACCCACATGATCTGGTAAGCGCCTCGCAGCTCCCCTCCAAATTGAACTTGCGG-CGAATG
rJMFF014D20- ACCCACATGATCTGGTAAGCGCCTCGCAGCTCCCCTCCAAATTGAACTTGCGG-CGAATG
rJMSF048K18- ACCCACATGATCTGGTAAGCGCCTCGCAGCTCCCCTCCAAATTGAACTTGCGG-CGAATG
rJMFF004C10- ACCCACATGATCTGGTAAGCGCCTCGCAGCTCCCCTCCAAATTGAACTTGCGGNNGAATG
JMFF044P19+ ACCCACATGATCTGGTAAGCGCCTCGCAGCTCCCCTCCAAATTGAACTTGCGG-CGAATG
JMFF014D20+ CCCACATGATCTGGTAAGCGCCTCGCAGCTCCCCTCCAAATTGAACTTGCGG-CGAATG
JMSF048K18+ ACCCACATGATCTGGTAAGCGCCTCGCAGCTCCCCTCCAAATTGAACTTGCGG-CGAATG
JMFF004C10+ CAAATTGAACTTGCGG-CGAATG
____________________________________________________________
consensus ACCCACATGATCTGGTAAGCGCCTCGCAGCTCCCCTCCAAATTGAACTTGCGG-CGAATG
. : . : . : . : . : . :
rJMFF044P19- GCGGTACGGCTAGGATAAGAGAACCAGGGAGCCAGGCAATTCCAACCAAAAAACGAATTC
rJMFF014D20- GCGGTACGGCTAGGATAAGAGAACCAGGGAGCCAGGCAATTCCAACCAAAAAACGAATTC
rJMSF048K18- GCGGTACGGCTAGGATAAGAGAACCAGGGAGCCAGGCAATTCCAACCAAAAAACGAATTC
rJMFF004C10- GCGGTACGGCTAGGATAAGAGAACCAGGGAGCCAGGCAATTCCAACCAAAAAACGAATTC
JMFF044P19+ GCGGTACGGCTAGGATAAGAGAACCAGGGAGCCAGGCAATTCCAACCAAAAAACGAATTC
JMFF014D20+ GCGGTACGGCTAGGATAAGAGAACCAGGGAGCCAGGCAATTCCAACCAAAAAACGAATTC
JMSF048K18+ GCGGTACGGCTAGGATAAGAGAACCAGGGAGCCAGGCAATTCCAACCAAAAAACGAATTC
JMFF004C10+ GCGGTACGGCTAGGATAAGAGAACCAGGGAGCCAGGCAATTCCAACCAAAAAACGAATTC
____________________________________________________________
consensus GCGGTACGGCTAGGATAAGAGAACCAGGGAGCCAGGCAATTCCAACCAAAAAACGAATTC
. : . : . : . : . : . :
rJMFF044P19- CCGATCAGGTATAAACCAGTGTAAGGCAAGCAGTGATTGGCGAAAGCCCCCGGGGAAGAA
rJMFF014D20- CCGATCAGGTATAAACCAGTGTAAGGCAAGCAGTGATTGGCGAAAGCCCCCGGGGAAGAA
rJMSF048K18- CCGATCAGGTATAAACCAGTGTAAGGCAAGCAGTGATTGGCGAAAGCCCCCGGGGAAGAA
rJMFF004C10- CCGATCAGGTATAAACCAGTGTAAGGCAAGCAGTGATTGGCGAAAGCCCCCGGGGAAGAA
JMFF044P19+ CCGATCAGGTATAAACCAGTGTAAGGCAAGCAGTGATTGGCGAAAGCCCCCGGGGAAGAA
JMFF014D20+ CCGATCAGGTATAAACCAGTGTAAGGCAAGCAGTGATTGGCGAAAGCCCCCGGGGAAGAA
JMSF048K18+ CCGATCAGGTATAAACCAGTGTAAGGCAAGCAGTGATTGGCGAAAGCCCCCGGGGAAGAA
JMFF004C10+ CCGATCAGGTATAAACCAGTGTAAGGCAAGCAGTGATTGGCGAAAGCCCCCGGGGAAGAA
____________________________________________________________
consensus CCGATCAGGTATAAACCAGTGTAAGGCAAGCAGTGATTGGCGAAAGCCCCCGGGGAAGAA
. : . : . : . : . : . :
rJMFF044P19- CCAATTCTCTCAACATTGGTTCCGT
rJMFF014D20- CCAATTCTCTCAACATTGGTTCCGTAGAGCACACAAGGGGCCAAACTTCCCAAC-AAACA
rJMSF048K18- CCAATTCTCTCAACATTGGTTCCGTAGAGCACACAAGGGGCCAAACTTCCTAAC-AAACA
rJMFF004C10- CCAATTCTCTCAACATTGGTTCCGTAGAGCACACAAGGGGCCAAACTTCCTAAN-AAACA
JMFF044P19+ CCAATTCTCTCAACATTGGTTCCGTAGAGCACACAAGGGGCCAAACTTCCTAAC-AAACA
JMFF014D20+ CCAATTCTCTCAACATTGGTTCCGTAGAGCACACAAGGGGCCAAACTTCCCAACAAAACA
JMSF048K18+ CCAATTCTCTCAACATTGGTTCCGTAGAGCACACAAGGGGCCAAACTTCCTAAC-AAACA
JMFF004C10+ CCAATTCTCTCAACATTGGTTCCGTAGAGCACACAAGGGGCCAAACTTCCTAACAAAACA
____________________________________________________________
consensus CCAATTCTCTCAACATTGGTTCCGTAGAGCACACAAGGGGCCAAACTTCCTAAC-AAACA
. : . : . : . : . : . :
rJMFF014D20- AACTTCAAGATCACTGCTGCAGAATTCATCATTCCTCCCCAGACAAGCACAGAGGCCGGA
rJMSF048K18- AACTTCAAGATCACTGCTGCAGAATTCATCATTCCTCCCCAGACAAGCACAGAGGCCGGA
rJMFF004C10- AACTTCAAGATCACTGCTGCAGAATTCATCATTCCTCCCCAGACAAGCACAGAGGCCGGA
JMFF044P19+ AACTTCAAGATCACTGCTGCAGAATTCATCATTCCTCCCCAGACAAGCACAGAGGCCGGA
JMFF014D20+ AACTTCAAGATCACTGCTGCAGAATTCATCATTCCTCCCCAGACAAGCACAGAGGCCGGA
JMSF048K18+ AACTTCAAGATCACTGCTGCAGAATTCATCATTCCTCCCCAGACAAGCACAGAGGCCGGA
JMFF004C10+ AACTTCAAGATCACTGCTGCAGAATTCATCATTCCTCCCCAGACAAGCACAGAGGCCGGA
____________________________________________________________
consensus AACTTCAAGATCACTGCTGCAGAATTCATCATTCCTCCCCAGACAAGCACAGAGGCCGGA
. : . : . : . : . : . :
rJMFF014D20- ATCCCACTGCGCC
rJMSF048K18- ATCCCACTGCGCCCTAGCCGCGACGGGCTCACCCGTCACGCTGTATCTCAACGGCAGGCC
rJMFF004C10- ATCCCACTGCGCCCTAGCCGCGACGGGCTCACCCGTCACGCTGTATCTCAACGGCAGGNC
JMFF044P19+ ATCCCACTGCGCCCTAGCCGCGACGGGCTCACCCGTCACGCTGTATCTCAACGGCAGGCC
JMFF014D20+ ATCCCACTGCGCCCTAGCCGCGACGGGCTCACCCGTCACGCTGTATCTCAACGGCAGGCC
JMSF048K18+ ATCCCACTGCGCCCTAGCCGCGACGGGCTCACCCGTCACGCTGTATCTCAACGGCAGGCC
JMFF004C10+ ATCCCACTGCGCCCTAGCCGCGACGGGCTCACCCGTCACGCTGTATCTCAACGGCAGGCC
____________________________________________________________
consensus ATCCCACTGCGCCCTAGCCGCGACGGGCTCACCCGTCACGCTGTATCTCAACGGCAGGCC
. : . : . : . : . : . :
rJMSF048K18- ATTGGCGGTCCACCCCATCGGA
rJMFF004C10- ATTGGCGGTCCACCCCATCGGAATA
JMFF044P19+ ATTGGCGGTCCACCCCATCGGAATAACAGCCGGGGGTGGCTTCACCGTGTCCGCCGGAGC
JMFF014D20+ ATTGGCGGTCCACCCCACCGGAATAACAGCCGGGGGTGGCTTCACCGTGTCCGCCGGAGC
JMSF048K18+ ATTGGCGGTCCACCCCATCGGAATAACAGCCGGGGGTGGCTTCACCGTGTCCGCCGGAGC
JMFF004C10+ ATTGGCGGTCCACCCCATCGGAATAACAGCCGGGGGTGGCTTCACCGTGTCCGCCGGAGC
____________________________________________________________
consensus ATTGGCGGTCCACCCCATCGGAATAACAGCCGGGGGTGGCTTCACCGTGTCCGCCGGAGC
. : . : . : . : . : . :
JMFF044P19+ CGGCGGAGGAGCTGGGGCGGCCGGAGCGGCTTGGTTCGATGAGTTGTTCTCATTTTTCGC
JMFF014D20+ CGGCGGAGGAGCTGGGGCGGCCGGAGCGGCTTGGTTCGATGAGTTGTTCTCATTTTTCGC
JMSF048K18+ CGGCGGAGGAGCTGGGGCGGCCGGAGCGGCTTGGTTCGATGAGTTGTTCTCATTTTTCGC
JMFF004C10+ CGGCGGAGGAGCTGGGGCGGCCGGAGCGGCTTGGTTCGATGAGTTGTTCTCATTTTTCGC
____________________________________________________________
consensus CGGCGGAGGAGCTGGGGCGGCCGGAGCGGCTTGGTTCGATGAGTTGTTCTCATTTTTCGC
. : . : . : . : . : . :
JMFF044P19+ CTGGGCTTCTTGTTGCCTTGGCAGGAGAGGACTCGATTCTTCAGAACTCGCCATGGAGAT
JMFF014D20+ CTGGGCTTCTTGTTGCCTTGGCAGGAGAGGACTCGATTCTTCAGAACTCGCCATGGAGAT
JMSF048K18+ CTGGGCTTCTTGTTGCCTTGGCAGGAGAGGACTCGATTCTTCAGAACTCGCCATGGAGAT
JMFF004C10+ CTGGGCTTCTTGTTGCCTTGGCAGGAGAGGACTCGATTCTTCAGAACTCGCCATGGAGAT
____________________________________________________________
consensus CTGGGCTTCTTGTTGCCTTGGCAGGAGAGGACTCGATTCTTCAGAACTCGCCATGGAGAT
. : . : . : . : . : . :
JMFF044P19+ CAAAATTCGATGAAATTCAGATCC
JMFF014D20+ CAAAATTCGATGAAATTCAGATCCAAAAATTC
JMSF048K18+ CAAAATTCGATGAAATTCAGATCCAAAAATTCAAAAGGGGG
JMFF004C10+ CAAAATTCGATGAAATTCAGATCCAAAAATTCAAAAGGGGGATTGAAGAAGTCCGGGGAT
____________________________________________________________
consensus CAAAATTCGATGAAATTCAGATCCAAAAATTCAAAAGGGGGATTGAAGAAGTCCGGGGAT