Contig 012788:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF043K21Sequence803023270ref|XP_006349651.1|1e-98PREDICTED: uncharacterized protein At1g04910-like isoform X1 [Solanum tuberosum728012788 (2)ref|XP_009362464.1|2e-81PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Pyrus x bretschne
JMSF051M01Sequence695008081 (3)ref|XP_009779551.1|1e-102PREDICTED: indole-3-acetic acid-amido synthetase GH3.6-like [Nicotiana sylvestr670012788 (2)ref|XP_009781764.1|1e-76PREDICTED: uncharacterized protein At1g04910 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF043K21+                                                        GGGCATGATGCTAA
                      ____________________________________________________________
consensus                                                           GGGCATGATGCTAA
 
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rJMSF043K21+          GAGGCATGGGATTTGATAATAGCACCCCGGTTTATGTTGCTGCTGGAAAAATTTATAAGG
rJMSF051M01+                                                                  AAGG
                      ____________________________________________________________
consensus             GAGGCATGGGATTTGATAATAGCACCCCGGTTTATGTTGCTGCTGGAAAAATTTATAAGG
 
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rJMSF043K21+          CCGAGAAGTATATGGCTCCACTC-AAACAGATATTTCCACATCTCGAATCGAAGGATACA
rJMSF051M01+          CCGAGAAGTATATGGCTCCACTCAAAACAGATATTTCCACATCTCGAATCGAAGGATACA
                      ____________________________________________________________
consensus             CCGAGAAGTATATGGCTCCACTCAAAACAGATATTTCCACATCTCGAATCGAAGGATACA
 
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rJMSF043K21+          CTTGCTTCTGCAGAAGAACTAGCTCCGTTTGAGGGACATTTATCTAGGTTGGCGGCTCTT
rJMSF051M01+          CTTGCTTCTGCAGAAGAACTAGCTCCGTTTGAGGGACATTTATCTAGGTTGGCGGCTCTT
                      ____________________________________________________________
consensus             CTTGCTTCTGCAGAAGAACTAGCTCCGTTTGAGGGACATTTATCTAGGTTGGCGGCTCTT
 
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rJMSF043K21+          GATTATACGGTTTGCCTCTACAGTGAAGTTTTTGTCACAACACAGGGTGGTAACTTCCCG
rJMSF051M01+          GATTATACGGTTTGCCTCTACAGTGAAGTTTTTGTCACAACACAGGGTGGTAACTTCCCG
                      ____________________________________________________________
consensus             GATTATACGGTTTGCCTCTACAGTGAAGTTTTTGTCACAACACAGGGTGGTAACTTCCCG
 
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rJMSF043K21+          CATTTCTTAGTGGGTCATAGACGCTATTTGAATGGAGGACATGGCAAGACAATCAAACCC
rJMSF051M01+          CATTTCTTAGTGGGTCATAGACGCTATTTGAATGGAGGACATGGCAAGACAATCAAACCC
                      ____________________________________________________________
consensus             CATTTCTTAGTGGGTCATAGACGCTATTTGAATGGAGGACATGGCAAGACAATCAAACCC
 
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rJMSF043K21+          GATAAGCGGAAATTAGTTCTTCTGTTTGATCGTCCAAGTATAAGATATAAAGACTTTAAA
rJMSF051M01+          GATAAGCGGAAATTAGTTCTTCTGTTTGATCGTCCAAGTATAAGATATAAAGACTTTAAA
                      ____________________________________________________________
consensus             GATAAGCGGAAATTAGTTCTTCTGTTTGATCGTCCAAGTATAAGATATAAAGACTTTAAA
 
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rJMSF043K21+          CGGCAGTTGCAAGATATGCTTCATCACAACGACATGAAGGGTTGTGAGGTAAAAAAAACC
rJMSF051M01+          CGGCAGTTGCAAGATATGCTTCATCACAACGACATGAAGGGTTGTGAGGT-AAAAAAACC
                      ____________________________________________________________
consensus             CGGCAGTTGCAAGATATGCTTCATCACAACGACATGAAGGGTTGTGAGGTAAAAAAAACC
 
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rJMSF043K21+          CAGCAACTCGCTCTATACATACCCAATGCCCGACTGCATGTGCAAACAAGCAGATGTGAA
rJMSF051M01+          CAGCAACTCGCTCTATACATACCCAATGCCCGACTGCATGTGCAAACAAGCAGATGTGAA
                      ____________________________________________________________
consensus             CAGCAACTCGCTCTATACATACCCAATGCCCGACTGCATGTGCAAACAAGCAGATGTGAA
 
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rJMSF043K21+          TAATGAAAGCGGTAATACCACAAAAGCCCTTTAATACATAGGATACATACACATATTCCA
rJMSF051M01+          TAATGAAAGCGGTAATACCACAAAAGCCCTTTAATACATAGGATACATACACATATTCCA
                      ____________________________________________________________
consensus             TAATGAAAGCGGTAATACCACAAAAGCCCTTTAATACATAGGATACATACACATATTCCA
 
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rJMSF043K21+          TAGAGTTTTTTGGGTTTACATACGTGTAATTTATATGTAGCTTAAAATTTCTGCCCGCCC
rJMSF051M01+          TAGAGTTTTTTGGGTTTACATACGTGTAATTTATATGTAGCTTAAAATTTCTGCCCGCCC
                      ____________________________________________________________
consensus             TAGAGTTTTTTGGGTTTACATACGTGTAATTTATATGTAGCTTAAAATTTCTGCCCGCCC
 
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rJMSF043K21+          CGGGGCGATATTATGGAGGCCTATTGTTCATCTTATAGGTATTGTATTCCTTAGAGATTC
rJMSF051M01+          CGGGGCGATATTATGGAGGCCTATTGTTCATCTTATAGGTATTGTATTCCTTAGAGATTC
                      ____________________________________________________________
consensus             CGGGGCGATATTATGGAGGCCTATTGTTCATCTTATAGGTATTGTATTCCTTAGAGATTC
 
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rJMSF043K21+          TTCGAGGTCCATTGAGGGGTTGGTTTGGTGATAGTTCTGAAAT                 
rJMSF051M01+          TTCGAGGTCCATTGAGGGGTTGGTTTGGTGATAGTTCTGAAATTGTTAACTCACTCTGCA
                      ____________________________________________________________
consensus             TTCGAGGTCCATTGAGGGGTTGGTTTGGTGATAGTTCTGAAATTGTTAACTCACTCTGCA