Contig 012783:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF028P18Sequence652010581 (9)ref|XP_002321240.1|2e-110serine carboxypeptidase S10 family protein [Populus trichocarpa] gb|EEE99555.1| 717012783 (3)ref|XP_006358849.1|2e-77PREDICTED: agamous-like MADS-box protein AGL19-like [Solanum tuberosum]
JMSF051D21Sequence647012783 (3)ref|XP_011081162.1|3e-56PREDICTED: MADS-box protein SOC1 [Sesamum indicum]682012783 (3)ref|XP_006358849.1|5e-42PREDICTED: agamous-like MADS-box protein AGL19-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF051D21- GATTAGGGGTAAGGGACCAGCAAACTGCAAAACACCATAAATATCCAT
                      ____________________________________________________________
consensus GATTAGGGGTAAGGGACCAGCAAACTGCAAAACACCATAAATATCCAT
 
. : . : . : . : . : . :
JMSF051D21- CCACCTCTCTCTCTCTTCTTCTTCTTCTTCTTAAAAAAGAAATTCTAGACAACATATTTC
                      ____________________________________________________________
consensus CCACCTCTCTCTCTCTTCTTCTTCTTCTTCTTAAAAAAGAAATTCTAGACAACATATTTC
 
. : . : . : . : . : . :
JMSF051D21- TCTTTCTTATTACCCATTTTAGGGTTTTCTGATGAAGAATCCATTCTTACCTCCCAGACT
                      ____________________________________________________________
consensus TCTTTCTTATTACCCATTTTAGGGTTTTCTGATGAAGAATCCATTCTTACCTCCCAGACT
 
. : . : . : . : . : . :
JMSF051D21- TTTGTTTTCCATCTCTCAGATCTGAAGAAACCCAGAAAAGTTCCAGTGAGCATTACAGTA
rJMSF028P18+ AGAAAAGTTCCAGTGAGCATTNCAGTA
                      ____________________________________________________________
consensus TTTGTTTTCCATCTCTCAGATCTGAAGAAACCCAGAAAAGTTCCAGTGAGCATTACAGTA
 
. : . : . : . : . : . :
JMSF051D21- AAGGAAGAAGAAGAAAATGGTAAGGGGAAAAACTGAGATGAAAAGGATAGAGAATGCTAC
rJMSF028P18+ AAGGAAGAAGAAGAAAATNGTAAGGGGAAAAACTGAGATGAAAAGGATAGAGAATGCTAC
                      ____________________________________________________________
consensus AAGGAAGAAGAAGAAAATGGTAAGGGGAAAAACTGAGATGAAAAGGATAGAGAATGCTAC
 
. : . : . : . : . : . :
JMSF051D21- AAGCAGGCAAGTTACTTTCTCCAAGAGGAGAAGTGGGCTTCTCAAAAAGGCTTTTGAGCT
rJMSF028P18+ AAGCAGGCAAGTTACTTTCTCCAAGAGGAGAAGTGGGCTTCTCAAAAAGGCTTTTGAGCT
                      ____________________________________________________________
consensus AAGCAGGCAAGTTACTTTCTCCAAGAGGAGAAGTGGGCTTCTCAAAAAGGCTTTTGAGCT
 
. : . : . : . : . : . :
JMSF051D21- CTCAGTTCTTTGTGATGCCGAAGTTGCCCTCATCGTCTTCTCCCCTAAAGGAAAGCTCTA
rJMSF028P18+ CTCAGTTCTTTGTGATGCCGAAGTTGCCCTCATCGTCTTCTCCCCTAAAGGAAAGCTCTA
rJMSF051D21+ TCTCCCCTAAAGGAAAGCTCTA
                      ____________________________________________________________
consensus CTCAGTTCTTTGTGATGCCGAAGTTGCCCTCATCGTCTTCTCCCCTAAAGGAAAGCTCTA
 
. : . : . : . : . : . :
JMSF051D21- TGAGTTCTCCAGCTCCAGCAGCCCTAGCAAGACGATAGAACGCTACGAAACGAATTCCAA
rJMSF028P18+ TGAGTTCTCCAGCTCCAGCAGCCCTAGCAAGACGATAGAACGCTACGAAACGAATTCCAA
rJMSF051D21+ TGAGTTCTCCAGCTCCAGCAGCCCTAGCAAGACGATAGAACGCTACGAAACGAATTCCAA
                      ____________________________________________________________
consensus TGAGTTCTCCAGCTCCAGCAGCCCTAGCAAGACGATAGAACGCTACGAAACGAATTCCAA
 
. : . : . : . : . : . :
JMSF051D21- GAACATGGGAGTCCACAAAAGAACAGTTGAACAAAATATACAGCATTTCAAAGAAGAGAT
rJMSF028P18+ GAACATGGGAGTCCACAAAAGAACAGTTGAACAAAATATACAGCATTTCAAAGAAGAGAT
rJMSF051D21+ GAACATGGGAGTCCACAAAAGAACAGTTGAACAAAATATACAGCATTTCAAAGAAGAGAT
                      ____________________________________________________________
consensus GAACATGGGAGTCCACAAAAGAACAGTTGAACAAAATATACAGCATTTCAAAGAAGAGAT
 
. : . : . : . : . : . :
JMSF051D21- TGCTACAATGAGCAGAAATGTAGATCTTCTTGAAAACACCAAAAGAAAGCTTCTGGGGGA
rJMSF028P18+ TGCTACAATGAGCAGAAATGTAGATCTTCTTGAAAACACCAAAAGAAAGCTTCTGGGGGA
rJMSF051D21+ TGCTACAATGAGCAGAAATGTAGATCTTCTTGAAAACACCAAAAGAAAGCTTCTGGGGGA
                      ____________________________________________________________
consensus TGCTACAATGAGCAGAAATGTAGATCTTCTTGAAAACACCAAAAGAAAGCTTCTGGGGGA
 
. : . : . : . : . : . :
JMSF051D21- AGGTTTAGAATCTTGCTCTACTGATGAGCTGCAACAGATAGAAGAGCAGTTGGAGCAAA
rJMSF028P18+ AGGTTTAGAATCTTGCTCTACTGATGAGCTGCAGCAGATAGAAGAGCAGTTGGAGCAAAG
rJMSF051D21+ AGGTTTAGAATCTTGCTCTACTGATGAGCTGCAACAGATAGAAGAGCAGTTGGAGCAAAG
                      ____________________________________________________________
consensus AGGTTTAGAATCTTGCTCTACTGATGAGCTGCAACAGATAGAAGAGCAGTTGGAGCAAAG
 
. : . : . : . : . : . :
rJMSF028P18+ CTTGAGCAACATTAGAGCAAGAAAGAATTTTATATACAAGGAAAGAATTACTAAGCTAAA
rJMSF051D21+ CTTGAGCAACATTAGAGCAAGAAAGAATTTTATATACAAGGAAAGAATTACTAAGCTAAA
                      ____________________________________________________________
consensus CTTGAGCAACATTAGAGCAAGAAAGAATTTTATATACAAGGAAAGAATTACTAAGCTAAA
 
. : . : . : . : . : . :
rJMSF028P18+ GGAAGAGGAAGAAACCCTAAGAAGGCATAATGCTGAATTGAGGAAAAGGCTTGAAGTAAA
rJMSF051D21+ GGAAGAGGAAGAAACCCTAAGAAGGCATAATGCTGAATTGAGGAAAAGGCTTGAAGTAAA
                      ____________________________________________________________
consensus GGAAGAGGAAGAAACCCTAAGAAGGCATAATGCTGAATTGAGGAAAAGGCTTGAAGTAAA
 
. : . : . : . : . : . :
rJMSF028P18+ ATCCTTGACTCTCTCAACAGTACAACAAGATATTGATCCCCAGCAGAAAATAATGGAAGT
rJMSF051D21+ ATCCTTGACTCTCTCAACAGTACAACAAGATATTGATCCCCAACAGAAAATAATGGAAGT
                      ____________________________________________________________
consensus ATCCTTGACTCTCTCAACAGTACAACAAGATATTGATCCCCAGCAGAAAATAATGGAAGT
 
. : . : . : . : . : . :
rJMSF028P18+ GGAGACACAACTATTTATTGGGCCTCCAGAAAGAAGCCCTCATTAGNGATTATTGTATTT
rJMSF051D21+ GGAGACACAACTATTTATTGGGCCTCCAGAAAGAAGCCCTCATTAGAGATTATTGTATTT
                      ____________________________________________________________
consensus GGAGACACAACTATTTATTGGGCCTCCAGAAAGAAGCCCTCATTAGAGATTATTGTATTT
 
. : . : . : . : . : . :
rJMSF028P18+ TTATTTTCATGTTATTATTAATA
rJMSF051D21+ TTATTTTCATGTTATTATTAATACTAGTGTGGTTTTCAAATTTAATATATATTTTTATGC
                      ____________________________________________________________
consensus TTATTTTCATGTTATTATTAATACTAGTGTGGTTTTCAAATTTAATATATATTTTTATGC
 
. : . : . : . : . : . :
rJMSF051D21+ AGTTTATGAACCTCTAAAGTATGTGTAAGTTACAAGCTTTACTAATTACTACGGAGTATG
                      ____________________________________________________________
consensus AGTTTATGAACCTCTAAAGTATGTGTAAGTTACAAGCTTTACTAATTACTACGGAGTATG
 
. : . : . : . : . : . :
rJMSF051D21+ AGTATGTGGACTACTAATCAACTAGATTATTCGTGACCAAGTTTAGTTGATTCGGGGTAT
                      ____________________________________________________________
consensus AGTATGTGGACTACTAATCAACTAGATTATTCGTGACCAAGTTTAGTTGATTCGGGGTAT