Contig 012765:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015E06Sequence513006726 (3)ref|XP_009608020.1|8e-84PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Nicotiana tomentosiformis]725012765 (3)ref|XP_009778099.1|3e-113PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Nicotiana sylvestris]
JMSF030H12Sequence654006726 (3)ref|XP_009608020.1|1e-90PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Nicotiana tomentosiformis]721012765 (3)ref|XP_009778099.1|8e-118PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Nicotiana sylvestris]
JMSF048H18Sequence705006726 (3)ref|XP_009608020.1|2e-125PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Nicotiana tomentosiformis]772012765 (3)ref|XP_009778099.1|7e-125PREDICTED: protein NRT1/ PTR FAMILY 5.2-like [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF030H12+                                                   GCAAGGCACCACTCTCAAC
rJMSF015E06+                                                   GCAAGGCACCACTCTCAAC
rJMSF048H18+                  AATGATTGCACAAATCAACACACTCTTTGTGAAGCAAGGCACCACTCTCAAC
                      ____________________________________________________________
consensus                     AATGATTGCACAAATCAACACACTCTTTGTGAAGCAAGGCACCACTCTCAAC
 
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rJMSF030H12+          AGAAGAGTAGGCAACTTCAACATCCCTCCAGCCAGTCTAGCCGGTTTCGTCACCATATCG
rJMSF015E06+          AGAAGAGTAGGCAACTTCAACATCCNTCCAGCCAGTCTAGCCGGNNTCGTCACCATATCG
rJMSF048H18+          AGAAGAGTAGGCAACTTCAACATCCCTCCAGCCAGTCTAGCCGGTTTCGTCACCATATCG
                      ____________________________________________________________
consensus             AGAAGAGTAGGCAACTTCAACATCCCTCCAGCCAGTCTAGCCGGTTTCGTCACCATATCG
 
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rJMSF030H12+          CTGCTCGTCTCAGTTGCTATATACGACCGGTTCTTCGTCCCCCTCATCAAGAAATGGACT
rJMSF015E06+          CTGCTCGTCTCAGTTGCTATATACGACCGGNTNTTCGTCCCCCTCATCAAGAAATGGACT
rJMSF048H18+          CTGCTCGTCTCAGTTGCTATATACGACCGGTTCTTCGTCCCCCTCATCAAGAAATGGACT
                      ____________________________________________________________
consensus             CTGCTCGTCTCAGTTGCTATATACGACCGGTTCTTCGTCCCCCTCATCAAGAAATGGACT
 
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rJMSF030H12+          AGAAACCCGAGAGGGATAAATCTTCTCCAACGTATGGGAATAGGTACAGCTCTCCACATT
rJMSF015E06+          AGAAACCCGAGAGGGATAAATCTTCTCCAACGTATGGGAATAGGTACAGCTCTCCACATT
rJMSF048H18+          AGAAACCCGAGAGGGATAAATCTTCTCCAACGTATGGGAATAGGTACAGCTCTCCACATT
                      ____________________________________________________________
consensus             AGAAACCCGAGAGGGATAAATCTTCTCCAACGTATGGGAATAGGTACAGCTCTCCACATT
 
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rJMSF030H12+          GTCATCATGGTAGTGGCTTCGTTAACCGAGAAGTACAGGCTCAGTGTGGCTAGAGACCAT
rJMSF015E06+          GTCATCATGGTAGTGGCTTCGTTAACCGAGAAGTACAGGCTCAGTGTGGCTAGAGACCAN
rJMSF048H18+          GTCATCATGGTAGTGGCTTCGTTAACCGAGAAGTACAGGCTCAGTGTGGCTAGAGACCAT
                      ____________________________________________________________
consensus             GTCATCATGGTAGTGGCTTCGTTAACCGAGAAGTACAGGCTCAGTGTGGCTAGAGACCAT
 
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rJMSF030H12+          GGCGTCGTCGAGAATGGAGGCCAAGTCCCCTTATCCATATTCATCTTGCTCCCTCAGTTC
rJMSF015E06+          GGCGTCGTCGAGAATGGAGGCCAAGTCCCCTTATCCATATTCATCTTGCTCCCTCAGTTC
rJMSF048H18+          GGCGTCGTCGAGAATGGAGGCCAAGTCCCCTTATCCATATTCATCTTGCTCCCTCAGTTC
                      ____________________________________________________________
consensus             GGCGTCGTCGAGAATGGAGGCCAAGTCCCCTTATCCATATTCATCTTGCTCCCTCAGTTC
 
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rJMSF030H12+          ATCCTGATGGGAACTGCTGACGCATTCCTCGAAGTCGCCAAGATTGAGTTCTTCTATGAC
rJMSF015E06+          ATCCTGATGGGAACTGCTGACGCATTCCTCGAAGTCGCCAAGATTGAGTTCTTCTATGAC
rJMSF048H18+          ATCCTGATGGGAACTGCTGACGCATTCCTCGAAGTCGCCAAGATTGAGTTCTTCTATGAC
                      ____________________________________________________________
consensus             ATCCTGATGGGAACTGCTGACGCATTCCTCGAAGTCGCCAAGATTGAGTTCTTCTATGAC
 
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rJMSF030H12+          CAAGCACCAGAGAGCATGAAGAGCTTGGGGACATCCTATTCCATGACAACCTTAGGAGTT
rJMSF015E06+          CAAGCACCAGAGAGCATGAAGAGCTTGGGGACATCNTATTCCATGACAACCTTAGGAGTT
rJMSF048H18+          CAAGCACCAGAGAGCATGAAGAGCTTGGGGACATCCTATTCCATGACAACCTTAGGAGTT
                      ____________________________________________________________
consensus             CAAGCACCAGAGAGCATGAAGAGCTTGGGGACATCCTATTCCATGACAACCTTAGGAGTT
 
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rJMSF030H12+          GGGAACTTCCTCAGCAGTGTTTTGCTCTCCAATGTTTCGCGCATCACAAAAAGGAACGGG
rJMSF015E06+          GGGAACTTCCTCAGCAGTGTTTTGCTCTCCAATGTTTCGCGCATCACAAAAAGGAACGGG
rJMSF048H18+          GGGAACTTCCTCAGCAGTGTTTTGCTCTCCAATGTTTCGCGCATCACAAAAAGGAACGGG
                      ____________________________________________________________
consensus             GGGAACTTCCTCAGCAGTGTTTTGCTCTCCAATGTTTCGCGCATCACAAAAAGGAACGGG
 
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rJMSF030H12+          CACCGAGGATGGATCCTCAACAACCTCAACGCCTCCCACCTCGACTACTACTACGCCTTC
rJMSF015E06+          CACCGAGGATGGATCCTCAACAACCTCAACGCCTCCCACCTCGACTACTACTACGCCTTC
rJMSF048H18+          CACCGAGGATGGATCCTCAACAACCTCAACGCCTCCCACCTCGACTACTACTACGCCTTC
                      ____________________________________________________________
consensus             CACCGAGGATGGATCCTCAACAACCTCAACGCCTCCCACCTCGACTACTACTACGCCTTC
 
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rJMSF030H12+          TTCGCGATACTTAATGCCCTCAACTTCATTTTCTTCCTAGTTGTGTCTAGGTTTTATGTG
rJMSF015E06+          TTCGCGATACTTAATGCCCTCAACTTCATTTTCTTCCTAGTTGTGTCTAGGTTTTATGTG
rJMSF048H18+          TTCGCGATACTTAATGCCCTCAACTTCATTTTCTTCCTAGTTGTGTCTAGGTTTTATGTG
                      ____________________________________________________________
consensus             TTCGCGATACTTAATGCCCTCAACTTCATTTTCTTCCTAGTTGTGTCTAGGTTTTATGTG
 
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rJMSF030H12+          TACAAGGCTGAGGTTTCTGACTCCATGGTTGTCTTGAGACAAGAGTTGGAGGTTGGGACA
rJMSF015E06+          TACAAGGCTGAGGTTTCTGACTCCATGGTTGTCTTGAGACAAGAGTTGGAGGTTGGGACA
rJMSF048H18+          TACAAGGCTGAGGTTTCTGACTCCATGGTTGTCTTGAGACAAGAGTTGGAGGTTGGGACA
                      ____________________________________________________________
consensus             TACAAGGCTGAGGTTTCTGACTCCATGGTTGTCTTGAGACAAGAGTTGGAGGTTGGGACA
 
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rJMSF030H12+          AAACACAAAGTTAATAGCCAAGAAACATCCAGGAAATAGA                    
rJMSF015E06+          AAACACAAAGTTAATAGCCAAGAAACATCCAGGAAATAGA                    
rJMSF048H18+          AAACACAAAGTTAATAGCCAAGAAACATCCAGGAAATAGACTAATTAACTAAGAACATTA
                      ____________________________________________________________
consensus             AAACACAAAGTTAATAGCCAAGAAACATCCAGGAAATAGACTAATTAACTAAGAACATTA