clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF034N05 | Sequence | 568 | 000925 (5) | ref|XP_009589996.1| | 1e-28 | PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis] | 752 | 012754 (5) | ref|XP_009341654.1| | 2e-91 | PREDICTED: protein TIC 40, chloroplastic-like, partial [Pyrus x bretschneideri] |
JMSF022G20 | Sequence | 666 | 000925 (5) | ref|XP_009589996.1| | 3e-40 | PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis] | 779 | 012754 (5) | ref|XP_006350341.1| | 1e-93 | PREDICTED: protein TIC 40, chloroplastic-like [Solanum tuberosum] |
JMSF035E20 | Sequence | 651 | 000925 (5) | ref|XP_009589996.1| | 3e-41 | PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis] | 719 | 012754 (5) | ref|XP_009341654.1| | 2e-92 | PREDICTED: protein TIC 40, chloroplastic-like, partial [Pyrus x bretschneideri] |
JMSF042M01 | Sequence | 772 | 000925 (5) | ref|XP_009589996.1| | 2e-40 | PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis] | 735 | 012754 (5) | ref|XP_009341654.1| | 6e-91 | PREDICTED: protein TIC 40, chloroplastic-like, partial [Pyrus x bretschneideri] |
JMSF046O19 | Sequence | 756 | 000925 (5) | ref|XP_009589996.1| | 2e-40 | PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis] | 702 | 012754 (5) | ref|XP_011074953.1| | 5e-50 | PREDICTED: protein TIC 40, chloroplastic-like [Sesamum indicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF035E20+ GGAAAGC
rJMSF022G20+ CTTCAGGATCGGGTCCAACTCAAAGTTCACCAGCTTCAGGATCGGGAAAGC
rJMFF034N05+ GGAAAGC
____________________________________________________________
consensus CTTCAGGATCGGGTCCAACTCAAAGTTCACCAGCTTCAGGATCGGGAAAGC
. : . : . : . : . : . :
rJMSF035E20+ CAAATCCTCCAATGACAGTGGAAGCCTTGGAGAAAATGATGGAAGATCCAACAGTGCAGA
rJMSF022G20+ CAAATCCTCCAATGACAGTGGAAGCCTTGGAGAAAATGATGGAAGATCCAACAGTGCAGA
rJMFF034N05+ CAAATCNTCCAATGACAGTGGAAGCCTTGGAGAAAATGATGGAAGATCCAACAGTGCAGA
rJMSF042M01+ TCCAATGACAGTGGAAGCCTTGGAGAAAATGATGGAAGATCCAACAGTGCAGA
____________________________________________________________
consensus CAAATCCTCCAATGACAGTGGAAGCCTTGGAGAAAATGATGGAAGATCCAACAGTGCAGA
. : . : . : . : . : . :
rJMSF035E20+ AAATGGTTTATCCCTATCTTCCAGATGAGATGAGAAATCCAGAAACCTTTAAATGGATGC
rJMSF022G20+ AAATGGTTTATCCCTATCTTCCAGATGAGATGAGAAATCCAGAAACCTTTAAATGGATGC
rJMFF034N05+ AAATGGTTTATCCCTATCTTCCAGATGAGATGAGAAATCCAGAAACCTTTAAATGGATGC
rJMSF042M01+ AAATGGTTTATCCCTATCTTCCAGATGAGATGAGAAATCCAGAAACCTTTAAATGGATGC
rJMSF046O19+ TTTAAATGGATGC
____________________________________________________________
consensus AAATGGTTTATCCCTATCTTCCAGATGAGATGAGAAATCCAGAAACCTTTAAATGGATGC
. : . : . : . : . : . :
rJMSF035E20+ TGCAAAATCCGCACTACCGTCAACAATTACAAGACATGCTGAATAACATGGGCGGAAGCC
rJMSF022G20+ TGCAAAATCCGCACTACCGTCAACAATTACAAGACATGCTGAATAACATGGGCGGAAGCC
rJMFF034N05+ TGCAAAATCCGCACTACCGTCAACAATTACAAGACATGCTGAATAACATGGGCGGAAGCC
rJMSF042M01+ TGCAAAATCCGCACTACCGTCAACAATTACAAGACATGCTGAATAACATGGGCGGAAGCC
rJMSF046O19+ TGCAAAATCCGCACTACCGTCAACAATTACAAGACATGCTGAATAACATGGGCGGAAGCC
____________________________________________________________
consensus TGCAAAATCCGCACTACCGTCAACAATTACAAGACATGCTGAATAACATGGGCGGAAGCC
. : . : . : . : . : . :
rJMSF035E20+ CTGAGT-GGGACAACCGCATGATGGATACATTGAAGAATTTCGATCTTAGTAGTCCGGAG
rJMSF022G20+ CTGAGT-GGGACAACCGCATGATGGATACATTGAAGAATTTCGATCTTAGTAGTCCGGAG
rJMFF034N05+ CTGAGT-GGGACAACCGCATGATGGATACATTGAAGAATTTCGATCTTAGTAGTCCGGAG
rJMSF042M01+ CTGAGT-GGGACAACCGCATGATGGATACATTGAAGAATTTCGATCTTAGTAGTCCGGAG
rJMSF046O19+ CTGAGTGGGGACAACCGCATGATGGATACATTGAAGAATTTCGATCTTAGTAGTCCGGAG
____________________________________________________________
consensus CTGAGT-GGGACAACCGCATGATGGATACATTGAAGAATTTCGATCTTAGTAGTCCGGAG
. : . : . : . : . : . :
rJMSF035E20+ GTCAAGCAACAGTTCGATCAAATAGGGCTTTCACCTGAGGAAGTCATTTCTAAGATTATG
rJMSF022G20+ GTCAAGCAACAGTTCGATCAAATAGGGCTTTCACCTGAGGAAGTCATTTCTAAGATTATG
rJMFF034N05+ GTCAAGCAACAGTTCGATCAAATAGGGCTTTCACCTGAGGAAGTCATTTCTAAGATTATG
rJMSF042M01+ GTCAAGCAACAGTTCGATCAAATAGGGCTTTCACCTGAGGAAGTCATTTCTAAGATTATG
rJMSF046O19+ GTCAAGCAACAGTTCGATCAAATAGGGCTTTCACCTGAGGAAGTCATTTCTAAGATTATG
____________________________________________________________
consensus GTCAAGCAACAGTTCGATCAAATAGGGCTTTCACCTGAGGAAGTCATTTCTAAGATTATG
. : . : . : . : . : . :
rJMSF035E20+ GCAAATCCTGATATTGCTATGGCATTCCAAAATCCTAGAATTCAAGCAGCAATTATGGAT
rJMSF022G20+ GCAAATCCTGATATTGCTATGGCATTCCAAAATCCTAGAATTCAAGCAGCAATTATGGAT
rJMFF034N05+ GCAAATCCTGATATTGCTATGGCATTCCAAAATCCTAGAATTCAAGCAGCAATTATGGAT
rJMSF042M01+ GCAAATCCTGATATTGCTATGGCATTCCAAAATCCTAGAATTCAAGCAGCAATTATGGAT
rJMSF046O19+ GCAAATCCTGATATTGCTATGGCATTCCAAAATCCTAGAATTCAAGCAGCAATTATGGAT
____________________________________________________________
consensus GCAAATCCTGATATTGCTATGGCATTCCAAAATCCTAGAATTCAAGCAGCAATTATGGAT
. : . : . : . : . : . :
rJMSF035E20+ GTTTCTCAGAATCCTTACAATATAGGCAAATATCAAGCTGACAAGGAGGTTATGGATGTC
rJMSF022G20+ GTTTCTCAGAATCCTTACAATATAGGCAAATATCAAGCTGACAAGGAGGTTATGGATGTC
rJMFF034N05+ GTTTCTCAGAATCCTTACAATATAGGCAAATATCAAGCTGACAAGGAGGTTATGGATGTC
rJMSF042M01+ GTTTCTCAGAATCCTTACAATATAGGCAAATATCAAGCTGACAAGGAGGTTATGGATGTC
rJMSF046O19+ GTTTCTCAGAATCCTTACAATATAGGCAAATATCAAGCTGACAAGGAGGTTATGGATGTC
____________________________________________________________
consensus GTTTCTCAGAATCCTTACAATATAGGCAAATATCAAGCTGACAAGGAGGTTATGGATGTC
. : . : . : . : . : . :
rJMSF035E20+ TTTAACAAGATAGCAGAGCTCTTTCCCGGTGCGAAACCTTGATTCCATCAATTACACCGC
rJMSF022G20+ TTTAACAAGATAGCAGAGCTCTTTCCCGGTGCGAAACCTTGATTCCATCAATTACACCGC
rJMFF034N05+ TTTAACAAGATAGCAGAGCTCTTTCCCGGTGCGAAACCTTGATTCCATCAATTACACCGC
rJMSF042M01+ TTTAACAAGATAGCAGAGCTCTTTCCCGGTGCGAAACCTTGATTCCATCAATTACACCGC
rJMSF046O19+ TTTAACAAGATAGCAGAGCTCTTTCCCGGTGCGAAACCTTGATTCCATCAATTACACCGC
____________________________________________________________
consensus TTTAACAAGATAGCAGAGCTCTTTCCCGGTGCGAAACCTTGATTCCATCAATTACACCGC
. : . : . : . : . : . :
rJMSF035E20+ AATGGGCAAATGCGTGGGCTCCTCCGTGATCTGAGTCGATGAAGGGAATTGTTTCGCGTA
rJMSF022G20+ AATGGGCAAATGCGTGGGCTCCTCCGTGATCTGAGTCGATGAAGGGAATTGTTTCGCGTA
rJMFF034N05+ AATGGGCAAATGCGTGGGCTCCTCCGTGATCTGAGTCGATGAAGGGAATTGTTTCGCGTA
rJMSF042M01+ AATGGGCAAATGCGTGGGCTCCTCCGTGATCTGAGTCGATGAAGGGAATTGTTTCGCGTA
rJMSF046O19+ AATGGGCAAATGCGTGGGCTCCTCCGTGATCTGAGTCGATGAAGGGAATTGTTTCGCGTA
____________________________________________________________
consensus AATGGGCAAATGCGTGGGCTCCTCCGTGATCTGAGTCGATGAAGGGAATTGTTTCGCGTA
. : . : . : . : . : . :
rJMSF035E20+ GTGGCTGTGCTATTGGGATTGTCATGATCCAAGCTAAAGATGAAATGCACAAACAGCATC
rJMSF022G20+ GTGGCTGTGCTATTGGGATTGTCATGATCCAAGCTAAAGATGAAATGCACAAACAGCATC
rJMFF034N05+ GTGGCTGTGCTATTGGGATTGTCATGATCCAAGCTAAAGATGAAATGCACAAACAGCATC
rJMSF042M01+ GTGGCTGTGCTATTGGGATTGTCATGATCCAAGCTAAAGATGAAATGCACAAACAGCATC
rJMSF046O19+ GTGGCTGTGCTATTGGGATTGTCATGATCCAAGCTAAAGATGAAATGCACAAACAGCATC
____________________________________________________________
consensus GTGGCTGTGCTATTGGGATTGTCATGATCCAAGCTAAAGATGAAATGCACAAACAGCATC
. : . : . : . : . : . :
rJMSF035E20+ ATCTTACAGTAGTTAGTTTCTGCAGACTGTTTTGGTGTACAAATTCTTTAGATTTTTTGG
rJMSF022G20+ ATCTTACAGTAGTTAGTTTCTGCAGACTGTTTTGGTGTACAAATTCTTTAGATTTTTTGG
rJMFF034N05+ ATCTTACAGTAGTTAGTTTCTGCAGACTGTTTTGGTGTACAAATTCTTTAGATTTTTTGG
rJMSF042M01+ ATCTTACAGTAGTTAGTTTCTGCAGACTGTTTTGGTGTACAAATTCTTTAGATTTTTTGG
rJMSF046O19+ ATCTTACAGTAGTTAGTTTCTGCAGACTGTTTTGGTGTACAAATTCTTTAGATTTTTTGG
____________________________________________________________
consensus ATCTTACAGTAGTTAGTTTCTGCAGACTGTTTTGGTGTACAAATTCTTTAGATTTTTTGG
. : . : . : . : . : . :
rJMSF035E20+ CAAGAAAAAGTTAGTAACTCCACAGCTTTTCCCAGAAGTGTTAAGATTAC
rJMSF022G20+ CAAGAAAAAGTTAGTAACTCCACAGCTTTTCCCAGAAGTGTTAAGATTACCATGTAATCT
rJMFF034N05+ CAAGAAAAAGTTAGTAACTCCACAGCTTTTCCCAGAAGTGTTAAGATTACCATGTAATCT
rJMSF042M01+ CAAGAAAAAGTTAGTAACTCCACAGCTTTTCCCAGAAGTGTTAAGATTACCATGTAATCT
rJMSF046O19+ CAAGAAAAAGTTAGTAACTCCACAGCTTTTCCCAGAAGTGTTAAGATTACCATGTAATCT
____________________________________________________________
consensus CAAGAAAAAGTTAGTAACTCCACAGCTTTTCCCAGAAGTGTTAAGATTACCATGTAATCT
. : . : . : . : . : . :
rJMSF022G20+ TAAGATCTT
rJMFF034N05+ TAAGATCTT
rJMSF042M01+ TAAGATCTTTTCATTA
rJMSF046O19+ TAAGATCTTTTCATTATGCTTTGTGTTTTTGTGCTATTTCCACATGAACCAATTGCATCT
____________________________________________________________
consensus TAAGATCTTTTCATTATGCTTTGTGTTTTTGTGCTATTTCCACATGAACCAATTGCATCT