Contig 012754:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034N05Sequence568000925 (5)ref|XP_009589996.1|1e-28PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis]752012754 (5)ref|XP_009341654.1|2e-91PREDICTED: protein TIC 40, chloroplastic-like, partial [Pyrus x bretschneideri]
JMSF022G20Sequence666000925 (5)ref|XP_009589996.1|3e-40PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis]779012754 (5)ref|XP_006350341.1|1e-93PREDICTED: protein TIC 40, chloroplastic-like [Solanum tuberosum]
JMSF035E20Sequence651000925 (5)ref|XP_009589996.1|3e-41PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis]719012754 (5)ref|XP_009341654.1|2e-92PREDICTED: protein TIC 40, chloroplastic-like, partial [Pyrus x bretschneideri]
JMSF042M01Sequence772000925 (5)ref|XP_009589996.1|2e-40PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis]735012754 (5)ref|XP_009341654.1|6e-91PREDICTED: protein TIC 40, chloroplastic-like, partial [Pyrus x bretschneideri]
JMSF046O19Sequence756000925 (5)ref|XP_009589996.1|2e-40PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis]702012754 (5)ref|XP_011074953.1|5e-50PREDICTED: protein TIC 40, chloroplastic-like [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF035E20+ GGAAAGC
rJMSF022G20+ CTTCAGGATCGGGTCCAACTCAAAGTTCACCAGCTTCAGGATCGGGAAAGC
rJMFF034N05+ GGAAAGC
                      ____________________________________________________________
consensus CTTCAGGATCGGGTCCAACTCAAAGTTCACCAGCTTCAGGATCGGGAAAGC
 
. : . : . : . : . : . :
rJMSF035E20+ CAAATCCTCCAATGACAGTGGAAGCCTTGGAGAAAATGATGGAAGATCCAACAGTGCAGA
rJMSF022G20+ CAAATCCTCCAATGACAGTGGAAGCCTTGGAGAAAATGATGGAAGATCCAACAGTGCAGA
rJMFF034N05+ CAAATCNTCCAATGACAGTGGAAGCCTTGGAGAAAATGATGGAAGATCCAACAGTGCAGA
rJMSF042M01+ TCCAATGACAGTGGAAGCCTTGGAGAAAATGATGGAAGATCCAACAGTGCAGA
                      ____________________________________________________________
consensus CAAATCCTCCAATGACAGTGGAAGCCTTGGAGAAAATGATGGAAGATCCAACAGTGCAGA
 
. : . : . : . : . : . :
rJMSF035E20+ AAATGGTTTATCCCTATCTTCCAGATGAGATGAGAAATCCAGAAACCTTTAAATGGATGC
rJMSF022G20+ AAATGGTTTATCCCTATCTTCCAGATGAGATGAGAAATCCAGAAACCTTTAAATGGATGC
rJMFF034N05+ AAATGGTTTATCCCTATCTTCCAGATGAGATGAGAAATCCAGAAACCTTTAAATGGATGC
rJMSF042M01+ AAATGGTTTATCCCTATCTTCCAGATGAGATGAGAAATCCAGAAACCTTTAAATGGATGC
rJMSF046O19+ TTTAAATGGATGC
                      ____________________________________________________________
consensus AAATGGTTTATCCCTATCTTCCAGATGAGATGAGAAATCCAGAAACCTTTAAATGGATGC
 
. : . : . : . : . : . :
rJMSF035E20+ TGCAAAATCCGCACTACCGTCAACAATTACAAGACATGCTGAATAACATGGGCGGAAGCC
rJMSF022G20+ TGCAAAATCCGCACTACCGTCAACAATTACAAGACATGCTGAATAACATGGGCGGAAGCC
rJMFF034N05+ TGCAAAATCCGCACTACCGTCAACAATTACAAGACATGCTGAATAACATGGGCGGAAGCC
rJMSF042M01+ TGCAAAATCCGCACTACCGTCAACAATTACAAGACATGCTGAATAACATGGGCGGAAGCC
rJMSF046O19+ TGCAAAATCCGCACTACCGTCAACAATTACAAGACATGCTGAATAACATGGGCGGAAGCC
                      ____________________________________________________________
consensus TGCAAAATCCGCACTACCGTCAACAATTACAAGACATGCTGAATAACATGGGCGGAAGCC
 
. : . : . : . : . : . :
rJMSF035E20+ CTGAGT-GGGACAACCGCATGATGGATACATTGAAGAATTTCGATCTTAGTAGTCCGGAG
rJMSF022G20+ CTGAGT-GGGACAACCGCATGATGGATACATTGAAGAATTTCGATCTTAGTAGTCCGGAG
rJMFF034N05+ CTGAGT-GGGACAACCGCATGATGGATACATTGAAGAATTTCGATCTTAGTAGTCCGGAG
rJMSF042M01+ CTGAGT-GGGACAACCGCATGATGGATACATTGAAGAATTTCGATCTTAGTAGTCCGGAG
rJMSF046O19+ CTGAGTGGGGACAACCGCATGATGGATACATTGAAGAATTTCGATCTTAGTAGTCCGGAG
                      ____________________________________________________________
consensus CTGAGT-GGGACAACCGCATGATGGATACATTGAAGAATTTCGATCTTAGTAGTCCGGAG
 
. : . : . : . : . : . :
rJMSF035E20+ GTCAAGCAACAGTTCGATCAAATAGGGCTTTCACCTGAGGAAGTCATTTCTAAGATTATG
rJMSF022G20+ GTCAAGCAACAGTTCGATCAAATAGGGCTTTCACCTGAGGAAGTCATTTCTAAGATTATG
rJMFF034N05+ GTCAAGCAACAGTTCGATCAAATAGGGCTTTCACCTGAGGAAGTCATTTCTAAGATTATG
rJMSF042M01+ GTCAAGCAACAGTTCGATCAAATAGGGCTTTCACCTGAGGAAGTCATTTCTAAGATTATG
rJMSF046O19+ GTCAAGCAACAGTTCGATCAAATAGGGCTTTCACCTGAGGAAGTCATTTCTAAGATTATG
                      ____________________________________________________________
consensus GTCAAGCAACAGTTCGATCAAATAGGGCTTTCACCTGAGGAAGTCATTTCTAAGATTATG
 
. : . : . : . : . : . :
rJMSF035E20+ GCAAATCCTGATATTGCTATGGCATTCCAAAATCCTAGAATTCAAGCAGCAATTATGGAT
rJMSF022G20+ GCAAATCCTGATATTGCTATGGCATTCCAAAATCCTAGAATTCAAGCAGCAATTATGGAT
rJMFF034N05+ GCAAATCCTGATATTGCTATGGCATTCCAAAATCCTAGAATTCAAGCAGCAATTATGGAT
rJMSF042M01+ GCAAATCCTGATATTGCTATGGCATTCCAAAATCCTAGAATTCAAGCAGCAATTATGGAT
rJMSF046O19+ GCAAATCCTGATATTGCTATGGCATTCCAAAATCCTAGAATTCAAGCAGCAATTATGGAT
                      ____________________________________________________________
consensus GCAAATCCTGATATTGCTATGGCATTCCAAAATCCTAGAATTCAAGCAGCAATTATGGAT
 
. : . : . : . : . : . :
rJMSF035E20+ GTTTCTCAGAATCCTTACAATATAGGCAAATATCAAGCTGACAAGGAGGTTATGGATGTC
rJMSF022G20+ GTTTCTCAGAATCCTTACAATATAGGCAAATATCAAGCTGACAAGGAGGTTATGGATGTC
rJMFF034N05+ GTTTCTCAGAATCCTTACAATATAGGCAAATATCAAGCTGACAAGGAGGTTATGGATGTC
rJMSF042M01+ GTTTCTCAGAATCCTTACAATATAGGCAAATATCAAGCTGACAAGGAGGTTATGGATGTC
rJMSF046O19+ GTTTCTCAGAATCCTTACAATATAGGCAAATATCAAGCTGACAAGGAGGTTATGGATGTC
                      ____________________________________________________________
consensus GTTTCTCAGAATCCTTACAATATAGGCAAATATCAAGCTGACAAGGAGGTTATGGATGTC
 
. : . : . : . : . : . :
rJMSF035E20+ TTTAACAAGATAGCAGAGCTCTTTCCCGGTGCGAAACCTTGATTCCATCAATTACACCGC
rJMSF022G20+ TTTAACAAGATAGCAGAGCTCTTTCCCGGTGCGAAACCTTGATTCCATCAATTACACCGC
rJMFF034N05+ TTTAACAAGATAGCAGAGCTCTTTCCCGGTGCGAAACCTTGATTCCATCAATTACACCGC
rJMSF042M01+ TTTAACAAGATAGCAGAGCTCTTTCCCGGTGCGAAACCTTGATTCCATCAATTACACCGC
rJMSF046O19+ TTTAACAAGATAGCAGAGCTCTTTCCCGGTGCGAAACCTTGATTCCATCAATTACACCGC
                      ____________________________________________________________
consensus TTTAACAAGATAGCAGAGCTCTTTCCCGGTGCGAAACCTTGATTCCATCAATTACACCGC
 
. : . : . : . : . : . :
rJMSF035E20+ AATGGGCAAATGCGTGGGCTCCTCCGTGATCTGAGTCGATGAAGGGAATTGTTTCGCGTA
rJMSF022G20+ AATGGGCAAATGCGTGGGCTCCTCCGTGATCTGAGTCGATGAAGGGAATTGTTTCGCGTA
rJMFF034N05+ AATGGGCAAATGCGTGGGCTCCTCCGTGATCTGAGTCGATGAAGGGAATTGTTTCGCGTA
rJMSF042M01+ AATGGGCAAATGCGTGGGCTCCTCCGTGATCTGAGTCGATGAAGGGAATTGTTTCGCGTA
rJMSF046O19+ AATGGGCAAATGCGTGGGCTCCTCCGTGATCTGAGTCGATGAAGGGAATTGTTTCGCGTA
                      ____________________________________________________________
consensus AATGGGCAAATGCGTGGGCTCCTCCGTGATCTGAGTCGATGAAGGGAATTGTTTCGCGTA
 
. : . : . : . : . : . :
rJMSF035E20+ GTGGCTGTGCTATTGGGATTGTCATGATCCAAGCTAAAGATGAAATGCACAAACAGCATC
rJMSF022G20+ GTGGCTGTGCTATTGGGATTGTCATGATCCAAGCTAAAGATGAAATGCACAAACAGCATC
rJMFF034N05+ GTGGCTGTGCTATTGGGATTGTCATGATCCAAGCTAAAGATGAAATGCACAAACAGCATC
rJMSF042M01+ GTGGCTGTGCTATTGGGATTGTCATGATCCAAGCTAAAGATGAAATGCACAAACAGCATC
rJMSF046O19+ GTGGCTGTGCTATTGGGATTGTCATGATCCAAGCTAAAGATGAAATGCACAAACAGCATC
                      ____________________________________________________________
consensus GTGGCTGTGCTATTGGGATTGTCATGATCCAAGCTAAAGATGAAATGCACAAACAGCATC
 
. : . : . : . : . : . :
rJMSF035E20+ ATCTTACAGTAGTTAGTTTCTGCAGACTGTTTTGGTGTACAAATTCTTTAGATTTTTTGG
rJMSF022G20+ ATCTTACAGTAGTTAGTTTCTGCAGACTGTTTTGGTGTACAAATTCTTTAGATTTTTTGG
rJMFF034N05+ ATCTTACAGTAGTTAGTTTCTGCAGACTGTTTTGGTGTACAAATTCTTTAGATTTTTTGG
rJMSF042M01+ ATCTTACAGTAGTTAGTTTCTGCAGACTGTTTTGGTGTACAAATTCTTTAGATTTTTTGG
rJMSF046O19+ ATCTTACAGTAGTTAGTTTCTGCAGACTGTTTTGGTGTACAAATTCTTTAGATTTTTTGG
                      ____________________________________________________________
consensus ATCTTACAGTAGTTAGTTTCTGCAGACTGTTTTGGTGTACAAATTCTTTAGATTTTTTGG
 
. : . : . : . : . : . :
rJMSF035E20+ CAAGAAAAAGTTAGTAACTCCACAGCTTTTCCCAGAAGTGTTAAGATTAC
rJMSF022G20+ CAAGAAAAAGTTAGTAACTCCACAGCTTTTCCCAGAAGTGTTAAGATTACCATGTAATCT
rJMFF034N05+ CAAGAAAAAGTTAGTAACTCCACAGCTTTTCCCAGAAGTGTTAAGATTACCATGTAATCT
rJMSF042M01+ CAAGAAAAAGTTAGTAACTCCACAGCTTTTCCCAGAAGTGTTAAGATTACCATGTAATCT
rJMSF046O19+ CAAGAAAAAGTTAGTAACTCCACAGCTTTTCCCAGAAGTGTTAAGATTACCATGTAATCT
                      ____________________________________________________________
consensus CAAGAAAAAGTTAGTAACTCCACAGCTTTTCCCAGAAGTGTTAAGATTACCATGTAATCT
 
. : . : . : . : . : . :
rJMSF022G20+ TAAGATCTT
rJMFF034N05+ TAAGATCTT
rJMSF042M01+ TAAGATCTTTTCATTA
rJMSF046O19+ TAAGATCTTTTCATTATGCTTTGTGTTTTTGTGCTATTTCCACATGAACCAATTGCATCT
                      ____________________________________________________________
consensus TAAGATCTTTTCATTATGCTTTGTGTTTTTGTGCTATTTCCACATGAACCAATTGCATCT