| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF013E19 | Sequence | 211 | 006440 (3) | 703 | 012749 (5) | ref|XP_009779742.1| | 161 | PREDICTED: uncharacterized protein LOC104228893 [Nicotiana sylvestris] | |||
| JMSF016C03 | Sequence | 293 | 006440 (3) | 774 | 012749 (5) | ref|XP_009779742.1| | 157 | PREDICTED: uncharacterized protein LOC104228893 [Nicotiana sylvestris] | |||
| JMSF026K13 | Sequence | 654 | 022131 | ref|XP_009779742.1| | 207 | PREDICTED: uncharacterized protein LOC104228893 [Nicotiana sylvestris] | 698 | 012749 (5) | ref|XP_009779742.1| | 157 | PREDICTED: uncharacterized protein LOC104228893 [Nicotiana sylvestris] |
| JMSF027J09 | Sequence | 503 | 008738 (3) | emb|CAN64859.1| | 1e-51 | hypothetical protein VITISV_030494 [Vitis vinifera] | 183 | 012749 (5) | gb|EYU31850.1| | 4e-17 | hypothetical protein MIMGU_mgv1a003987mg [Erythranthe guttata] |
| JMSF046G02 | Sequence | 694 | 006440 (3) | ref|XP_011098926.1| | 68.6 | PREDICTED: uncharacterized protein LOC105177458 [Sesamum indicum] | 809 | 012749 (5) | ref|XP_009624110.1| | 152 | PREDICTED: uncharacterized protein LOC104115230 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF027J09+ CTGCAGCCAATC
____________________________________________________________
consensus CTGCAGCCAATC
. : . : . : . : . : . :
rJMSF027J09+ TTAAACTAAGTTCAAAACCCAGAGTTGTTGTTGTTTCAGATACACCTTCTTTGGTGAAAG
____________________________________________________________
consensus TTAAACTAAGTTCAAAACCCAGAGTTGTTGTTGTTTCAGATACACCTTCTTTGGTGAAAG
. : . : . : . : . : . :
rJMSF027J09+ ACATTGCTCCATACTTAAATGAGTTTGCAGAGGTTCTGCACTTTGATTACAAACATTTTG
rJMSF013E19+ CTGCACTTTGATTACAANCATTTTG
rJMSF016C03+ AGGTTCTGCACTTTGATTACAAACATTTTG
rJMSF046G02+ AGGTTCTGCACTTTGATTACAAACATTTTG
____________________________________________________________
consensus ACATTGCTCCATACTTAAATGAGTTTGCAGAGGTTCTGCACTTTGATTACAAACATTTTG
. : . : . : . : . : . :
rJMSF027J09+ AAGGAGCTCAAAAAACAACAGGAAAATTAAATAAGTTTAGAAGCAAGGAT
rJMSF013E19+ AAGGAGCTCAAAAAACAACAGGAAAATTAAATAAGTTTAGAAGCAAGGATTGGGGTCCAG
rJMSF016C03+ AAGGAGCTCAAAAAACAACAGGAAAATTAAATAAGTTTAGAAGCAAGGATTGGGGTCCAG
rJMSF026K13+ CAGGAAAATTAAATAAGTTTAGAAGCAAGGATTGGGGTCCAG
rJMSF046G02+ AAGGAGCTCAAAAAACAACAGGAAAATTAAATAAGTTTAGAAGCAAGGATTGGGGTCCAG
____________________________________________________________
consensus AAGGAGCTCAAAAAACAACAGGAAAATTAAATAAGTTTAGAAGCAAGGATTGGGGTCCAG
. : . : . : . : . : . :
rJMSF013E19+ CACCAAGATGGGTTGCCTTTGTTGATTTTTTTC-TGCTTCGCGGGCAAAACATGCTGTTA
rJMSF016C03+ CACCAAGATGGGTTGCCTTTGTTGATTTTTTTCTTGCTTCGCGGGCAAAACATGCTGTTA
rJMSF026K13+ CACCAAGATGGGTTGCCTTTGTTGATTTTTTTCTTGCTTCGCGGGCAAAACATGCTGTTA
rJMSF046G02+ CACCAAGATGGGTTGCCTTTGTTGATTTTTTTCTTGCTTCGCGGGCAAAACATGCTGTTA
____________________________________________________________
consensus CACCAAGATGGGTTGCCTTTGTTGATTTTTTTCTTGCTTCGCGGGCAAAACATGCTGTTA
. : . : . : . : . : . :
rJMSF013E19+ TTTCTGGGGCTCACAGGCGTGTGGGGACTACATATGCACAGTTGATTGCAGCATTGGGGG
rJMSF016C03+ TTTCTGGGGCTCACAGGCGTGTGGGGACTACATATGCACAGTTGATTGCAGCATTGGGGG
rJMSF026K13+ TTTCTGGGGCTCACAGGCGTGTGGGGACTACATATGCACAGTTGATTGCAGCATTGGGGG
rJMSF046G02+ TTTCTGGGGCTCACAGGCGTGTGGGGACTACATATGCACAGTTGATTGCAGCATTGGGGG
____________________________________________________________
consensus TTTCTGGGGCTCACAGGCGTGTGGGGACTACATATGCACAGTTGATTGCAGCATTGGGGG
. : . : . : . : . : . :
rJMSF013E19+ CAGCTTACCATCTTGCAGGTAATTTAATTTCCATCCTATCCTAATTCGATTATCAGTACT
rJMSF016C03+ CAGCTTACCATCCTGCAGGTAATTTAATTTCCATCCTATCCTAATTCGATTATCAGTACT
rJMSF026K13+ CAGCTTACCATCTTGCAGGTAATTTAATTTCCATCCTATCCTAATTCGATTATCAGTACT
rJMSF046G02+ CAGCTTACCATCTTGCAGGTAATTTAATTTCCATCCTATCCTAATTCGATTATCAGTACT
____________________________________________________________
consensus CAGCTTACCATCTTGCAGGTAATTTAATTTCCATCCTATCCTAATTCGATTATCAGTACT
. : . : . : . : . : . :
rJMSF013E19+ TATCTATGAATGAGATGATCTGAGATAATGGGGTTGTGTTAGTTCCTATCTAGCTAGCTA
rJMSF016C03+ TATCTATGAATGAGATGATCTGAGATAATGGGGTTGTGTTAGTTCCTATCTAGCTAGCTA
rJMSF026K13+ TATCTATGAATGAGATGATCTGAGATAATGGGGTTGTGTTAGTTCCTATCTAGCTAGCTA
rJMSF046G02+ TATCTATGAATGAGATGATCTGAGATAATGGGGTTGTGTTAGTTCCTATCTAGCTAGCTA
____________________________________________________________
consensus TATCTATGAATGAGATGATCTGAGATAATGGGGTTGTGTTAGTTCCTATCTAGCTAGCTA
. : . : . : . : . : . :
rJMSF013E19+ GCTAATTGTGTTTGAATTGATTGATCATCAGAAGAAGTAGATAATTCTTCAAAAAGTTTG
rJMSF016C03+ GCTAATTGTGTTTGAATTGATTGATCATCAGAAGAAGTAGATAATTCTTCAAAAAGTTTG
rJMSF026K13+ GCTAATTGTGTTTGAATTGATTGATCATCAGAAGAAGTAGATAATTCTTCAAAAAGTTTG
rJMSF046G02+ GCTAATTGTGTTTGAATTGATTGATCATCAGAAGAAGTAGATAATTCTTCAAAAAGTTTG
____________________________________________________________
consensus GCTAATTGTGTTTGAATTGATTGATCATCAGAAGAAGTAGATAATTCTTCAAAAAGTTTG
. : . : . : . : . : . :
rJMSF013E19+ AGTTTCCTAAGTAGCTTCCAAAGGAACTTGGTTTCTGATGGGTTGGGGAGGAATCAGATA
rJMSF016C03+ AGTTTCCTAAGTAGCTTCCAAAGGAACTTGGTTTCTGATGGGTTGGGGAGGAATCAGATA
rJMSF026K13+ AGTTTCCTAAGTAGCTTCCAAAGGAACTTGGTTTCTGATGGGTTGGGGAGGAATCAGATA
rJMSF046G02+ AGTTTCCTAAGTAGCTTCCAAAGGAACTTGGTTTCTGATGGGTTGGGGAGGAATCAGATA
____________________________________________________________
consensus AGTTTCCTAAGTAGCTTCCAAAGGAACTTGGTTTCTGATGGGTTGGGGAGGAATCAGATA
. : . : . : . : . : . :
rJMSF013E19+ GGTTGGGGACATGCGTGGAACAGATTTGCAGGGCCATTGAGTTGCCACACTCAATCCAAC
rJMSF016C03+ GGTTGGGGACATGCGTGGAACAGATTTGCAGGGCCATTGAGTTGCCACACTCAATCCAAC
rJMSF026K13+ GGTTGGGGACATGCGTGGAACAGATTTGCAGGGCCATTGAGTTGCCACACTCAATCCAAC
rJMSF046G02+ GGTTGGGGACATGCGTGGAACAGATTTGCAGGGCCATTGAGTTGCCACACTCAATCCAAC
____________________________________________________________
consensus GGTTGGGGACATGCGTGGAACAGATTTGCAGGGCCATTGAGTTGCCACACTCAATCCAAC
. : . : . : . : . : . :
rJMSF013E19+ CAGTGTGCCTACACACCACTTCTTCCTCCTGCTTGGTGGGATGGCATATGGCAGTCACCC
rJMSF016C03+ CAGTGTGCCTACACACCACTTCTTCCTCCTGCTTGGTGGGATGGCATATGGCAGTCACCC
rJMSF026K13+ CAGTGTGCCTACACACCACTTCTTCCTCCTGCTTGGTGGGATGGCATATGGCAGTCACCC
rJMSF046G02+ CAGTGTGCCTACACACCACTTCTTCCTCCTGCTTGGTGGGATGGCATATGGCAGTCACCC
____________________________________________________________
consensus CAGTGTGCCTACACACCACTTCTTCCTCCTGCTTGGTGGGATGGCATATGGCAGTCACCC
. : . : . : . : . : . :
rJMSF013E19+ ATTTCACGGGATATCCGCAGGATGGAAGCCTATGGCATCCGCCTTTCTGCTTTTGGGACT
rJMSF016C03+ ATTTCACGGGATATCCGCAGGATGGAAGCCTATGGCATCCGCCTTTCTGCTTTTGGGACT
rJMSF026K13+ ATTTCACGGGATATCCGCAGGATGGAAGCCTATGGCATCCGCCTTTCTGCTTTTGGGACT
rJMSF046G02+ ATTTCACGGGATATCCGCAGGATGGAAGCCTATGGCATCCGCCTTTCTGCTTTTGGGACT
____________________________________________________________
consensus ATTTCACGGGATATCCGCAGGATGGAAGCCTATGGCATCCGCCTTTCTGCTTTTGGGACT
. : . : . : . : . : . :
rJMSF013E19+ TTCGATGTTAACCAACTACGTACATTCTGCAATTCCAGGAAGGATA-CTGTAGTAACTCT
rJMSF016C03+ TTCGATGTTAACCAACTACGTACATTCTGCAATTCCAGGAAGGATA-CTGTAGTAACTCT
rJMSF026K13+ TTCGATGTTAACCAACTACGTACATTCTGCAATTCCAGGAAGGATA-CTGTAGTAACTCT
rJMSF046G02+ TTCGATGTTAACCAACTACGTACATTCTGCAATTCCAGGAAGGATANCTGTAGTAACTCT
____________________________________________________________
consensus TTCGATGTTAACCAACTACGTACATTCTGCAATTCCAGGAAGGATA-CTGTAGTAACTCT
. : . : . : . : . : . :
rJMSF013E19+ CAAACTCATCATTTAAATTT
rJMSF016C03+ CAAACTCATCATTTAAATTTTAACCTTAATTAGCTTGTACTGACTAT
rJMSF026K13+ CAAACTCATCATTTAAATTTTAACCTTAATTAGCTTGTACTGACTATTATATTAT
rJMSF046G02+ CAAACTCATCATTTAAATTTTAACCTTAATTAGCTTGTACTGACTATTATATTATACTCC
____________________________________________________________
consensus CAAACTCATCATTTAAATTTTAACCTTAATTAGCTTGTACTGACTATTATATTATACTCC