Contig 012748:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024O13Sequence522000676 (4)ref|XP_009800757.1|3e-14PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 isoform X1 [Nicotiana syl771012748 (4)ref|XP_009625987.1|1e-62PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Nicotiana tomentosiformi
JMSF014I16Sequence497000676 (4)ref|XP_009800757.1|1e-08PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 isoform X1 [Nicotiana syl793012748 (4)ref|XP_009625987.1|9e-65PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Nicotiana tomentosiformi
JMSF046D16Sequence786000676 (4)ref|XP_009800759.1|1e-57PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 isoform X2 [Nicotiana syl800012748 (4)ref|XP_009798332.1|6e-29PREDICTED: inactive poly [ADP-ribose] polymerase RCD1-like isoform X2 [Nicotian
JMSF047G05Sequence703000676 (4)ref|XP_009800757.1|1e-39PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 isoform X1 [Nicotiana syl755012748 (4)ref|XP_009798332.1|3e-31PREDICTED: inactive poly [ADP-ribose] polymerase RCD1-like isoform X2 [Nicotian

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF014I16+ GTTCGACATA
                      ____________________________________________________________
consensus GTTCGACATA
 
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rJMSF014I16+ TGATTTTGTGCCGAGTTATTATGGAAACATGGAGCCAGTTTACCTTGGATCTAAGCAGTT
                      ____________________________________________________________
consensus TGATTTTGTGCCGAGTTATTATGGAAACATGGAGCCAGTTTACCTTGGATCTAAGCAGTT
 
. : . : . : . : . : . :
rJMSF014I16+ CCATCCCAGTAATGAGGCCTTTGATAATGGTGTAGATGATCCTCAAAATCCGAAGCATTA
                      ____________________________________________________________
consensus CCATCCCAGTAATGAGGCCTTTGATAATGGTGTAGATGATCCTCAAAATCCGAAGCATTA
 
. : . : . : . : . : . :
rJMSF014I16+ CATAATATGGAGTATGAATATGAATACTCATGTTTATCCGGAATATGTTGTTAGTTTCAA
                      ____________________________________________________________
consensus CATAATATGGAGTATGAATATGAATACTCATGTTTATCCGGAATATGTTGTTAGTTTCAA
 
. : . : . : . : . : . :
rJMSF014I16+ GCTTTCTTCTGAAGTTGAAGGAGCAGTGGTTCAAAGTGAGAGCCTGAATGATGTTTCAGG
rJMSF047G05+ AGGAGCAGTGGTTCAAAGTGAGAGCCTGAATGATGTTTCAGG
rJMFF024O13+ AGGAGCAGTGGTTCAAAGTGAGAGCCTGAATGATGTTTCAGG
rJMSF046D16+ GAGCAGTGGTTCAAAGTGAGAGCCTGAATGATGTTTCAGG
                      ____________________________________________________________
consensus GCTTTCTTCTGAAGTTGAAGGAGCAGTGGTTCAAAGTGAGAGCCTGAATGATGTTTCAGG
 
. : . : . : . : . : . :
rJMSF014I16+ GGTTACTACTGTTCAGGGGTCATCATATCAGGCAAATGACAACCATCAAATTTTACTCCA
rJMSF047G05+ GGTTACTACTGTTCAGGGGTCATCATATCAGGCAAATGACAACCATCAAATTTTACTCCA
rJMFF024O13+ GGTTACTACTGTTCAGGGGTCATCATATCAGGCAAATGACAACCATCAAATTTTACTCCA
rJMSF046D16+ GGTTACTACTGTTCAGGGGTCATCATATCAGGCAAATGACAACCATCAAATTTTACTCCA
                      ____________________________________________________________
consensus GGTTACTACTGTTCAGGGGTCATCATATCAGGCAAATGACAACCATCAAATTTTACTCCA
 
. : . : . : . : . : . :
rJMSF014I16+ AAAGCCTCAAGGGAATGTTCCTAGGATCCCAAAGTCCCCCTGGATGTCATTCCCCGTGTT
rJMSF047G05+ AAAGCCTCAAGGGAATGTTCCTAGGATCCCAAAGTCCCCCTGGATGTCATTCCCCGTGTT
rJMFF024O13+ AAAGCCTCAAGGGAATGTTCCTAGGATCCCAAAGTCCCCCTGGATGTCATTCCCCGTGTT
rJMSF046D16+ AAAGCCTCAAGGGAATGTTCCTAGGATCCCAAAGTCCCCCTGGATGTCATTCCCCGTGTT
                      ____________________________________________________________
consensus AAAGCCTCAAGGGAATGTTCCTAGGATCCCAAAGTCCCCCTGGATGTCATTCCCCGTGTT
 
. : . : . : . : . : . :
rJMSF014I16+ GTTTGCTGCTATATCAGAGAAAGTTGCTCCAGAGAAGATGAAAATTGTTAATAGCAGTTA
rJMSF047G05+ GTTTGCTGCTATATCAGAGAAAGTTGCTCCAGAGAAGATGAAAATTGTTAATAGCAGTTA
rJMFF024O13+ GTTTGCTGCTATATCAGAGAAAGTTGCTCCAGAGAAGATGAAAATTGTTAATAGCAGTTA
rJMSF046D16+ GTTTGCTGCTATATCAGAGAAAGTTGCTCCAGAGAAGATGAAAATTGTTAATAGCAGTTA
                      ____________________________________________________________
consensus GTTTGCTGCTATATCAGAGAAAGTTGCTCCAGAGAAGATGAAAATTGTTAATAGCAGTTA
 
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rJMSF014I16+ TGAGTTATTCAAGAGTAAAAAGATTAGCCGTGATGAATTGGTGAAAAAGCTGAGGTTGTC
rJMSF047G05+ TGAGTTATTCAAGAGTAAAAAGATTAGCCGTGATGAATTGGTGAAAAAGCTGAGGTTGTC
rJMFF024O13+ TGAGTTATTCAAGAGTAAAAAGATTAGCCGTGATGAATTGGTGAAAAAGCTGAGGTTGTC
rJMSF046D16+ TGAGTTATTCAAGAGTAAAAAGATTAGCCGTGATGAATTGGTGAAAAAGCTGAGGTTGTC
                      ____________________________________________________________
consensus TGAGTTATTCAAGAGTAAAAAGATTAGCCGTGATGAATTGGTGAAAAAGCTGAGGTTGTC
 
. : . : . : . : . : . :
rJMSF014I16+ TGTTGGGGATACTTTATTGAGGTCCACTATAATGAGTCTTCAGTCCAAGATGCCACCAAA
rJMSF047G05+ TGTTGGGGATACTTTATTGAGGTCCACTATAATGAGTCTTCAGTCCAAGATGCCACCAAA
rJMFF024O13+ TGTTGGGGATACTTTATTGAGGTCCACTATAATGAGTCTTCAGTCCAAGATGCCACCAAA
rJMSF046D16+ TG-TGGGGATACTTTATTGAGGTCCACTATAATGAGTCTTCAGTCCAAGATGCCACCAAA
                      ____________________________________________________________
consensus TGTTGGGGATACTTTATTGAGGTCCACTATAATGAGTCTTCAGTCCAAGATGCCACCAAA
 
. : . : . : . : . : . :
rJMSF014I16+ ACCTGTTGAATTGGTCACACCAAAACTAGAGCCCTGAAGTTTTTGGCCTCTAAACTGAGG
rJMSF047G05+ ACCTGTTGAATTGGTCACACCAAAACTAGAGCCCTGAAGTTTTTGGCCTCTAAACTGAGG
rJMFF024O13+ ACCTGTTGAATTGGTCACACCAAAACTAGAGCCCTGAAGTTTTTGGCCTCTAAACTGAGG
rJMSF046D16+ ACCTGTTGAATTGGTCACACCAAAACTAGAGCCCTGAAGTTTTTGGCCTCTAAACTGAGG
                      ____________________________________________________________
consensus ACCTGTTGAATTGGTCACACCAAAACTAGAGCCCTGAAGTTTTTGGCCTCTAAACTGAGG
 
. : . : . : . : . : . :
rJMSF014I16+ TGGCACCAAAAGTTCAGGTTGTCAAGAAAGGGTGGATTTGTTATGTGTATAACAGTATAA
rJMSF047G05+ TGGCACCAAAAGTTCAGGTTGTCAAGAAAGGGTGGATTTGTTATGTGTATAACAGTATAA
rJMFF024O13+ TGGCACCAAAAGTTCAGGTTGTCAAGAAAGGGTGGATTTGTTATGTGTATAACAGTATAA
rJMSF046D16+ TGGCACCAAAAGTTCAGGTTGTCAAGAAAGGGTGGATTTGTTATGTGTATAACAGTATAA
                      ____________________________________________________________
consensus TGGCACCAAAAGTTCAGGTTGTCAAGAAAGGGTGGATTTGTTATGTGTATAACAGTATAA
 
. : . : . : . : . : . :
rJMSF014I16+ GTAGAGTATGACCTTGAAAATAGCCAATGATTTACCTTGGATTGCTGTTATATGTTGAAA
rJMSF047G05+ GTAGAGTATGACCTTGAAAATAGCCAATGATTTACCTTGGATTGCTGTTATATGTTGAAA
rJMFF024O13+ GTAGAGTATGACCTTGAAAATAGCCAATGATTTACCTTGGATTGCTGTTATATGTTGAAA
rJMSF046D16+ GTAGAGTATGACCTTGAAAATAGCCAATGATTTACCTTGGATTGCTGTTATATGTTGAAA
                      ____________________________________________________________
consensus GTAGAGTATGACCTTGAAAATAGCCAATGATTTACCTTGGATTGCTGTTATATGTTGAAA
 
. : . : . : . : . : . :
rJMSF014I16+ CTAACTGGAGCTTTGCTTTCTCTCTCCATTTGGCCATGTTATGCTTATTTCTTTCTGTCA
rJMSF047G05+ CTAACTGGAGCTTTGCTTTCTCTCTCCATTTGG-CATGTTATGCTTATTTCTTTCTGTCA
rJMFF024O13+ CTAACTGGAGCTTTGCTTTCTCTCTCCATTTGG-CATGTTATGCTTATTTCTTTCTGTCA
rJMSF046D16+ CTAACTGGAGCTTTGCTTTCTCTCTCCATTTGG-CATGTTATGCTTATTTCTTTCTGTCA
                      ____________________________________________________________
consensus CTAACTGGAGCTTTGCTTTCTCTCTCCATTTGG-CATGTTATGCTTATTTCTTTCTGTCA
 
. : . : . : . : . : . :
rJMSF014I16+ AGA
rJMSF047G05+ AGA
rJMFF024O13+ AGATTGTTGATTAATAATAT
rJMSF046D16+ AGATTGTTGATTAATAATATTGAACCTGTTTCAGGCTTTTATCTTCCTATCTTGTTTGTC
                      ____________________________________________________________
consensus AGATTGTTGATTAATAATATTGAACCTGTTTCAGGCTTTTATCTTCCTATCTTGTTTGTC
 
. : . : . : . : . : . :
rJMSF046D16+ TTTTTGGTCAGGGAAGCCAATGGTGTATAATTAGTTCTTAAGTTATTGAAAATGTGATAC
                      ____________________________________________________________
consensus TTTTTGGTCAGGGAAGCCAATGGTGTATAATTAGTTCTTAAGTTATTGAAAATGTGATAC