clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFN009K01 | Sequence | 520 | 012732 (5) | gb|KJB74911.1| | 9e-64 | hypothetical protein B456_012G014200 [Gossypium raimondii] | |||||
JMSF035F14 | Sequence | 478 | 018975 | 732 | 012732 (5) | ref|XP_006365983.1| | 8e-105 | PREDICTED: potassium transporter 2-like isoform X1 [Solanum tuberosum] ref|XP_00 | |||
JMSF038J23 | Sequence | 627 | 009579 (3) | ref|XP_006365983.1| | 6e-75 | PREDICTED: potassium transporter 2-like isoform X1 [Solanum tuberosum] ref|XP_00 | 670 | 012732 (5) | ref|XP_009773199.1| | 6e-83 | PREDICTED: potassium transporter 2 isoform X2 [Nicotiana sylvestris] |
JMSF043F05 | Sequence | 813 | 009579 (3) | ref|XP_009597460.1| | 1e-131 | PREDICTED: potassium transporter 2 isoform X1 [Nicotiana tomentosiformis] ref|XP | 749 | 012732 (5) | ref|XP_006365983.1| | 4e-92 | PREDICTED: potassium transporter 2-like isoform X1 [Solanum tuberosum] ref|XP_00 |
JMSF051F19 | Sequence | 657 | 009579 (3) | ref|XP_008456930.1| | 5e-62 | PREDICTED: potassium transporter 2 [Cucumis melo] ref|XP_008456931.1| PREDICTED: | 721 | 012732 (5) | ref|XP_006365983.1| | 2e-88 | PREDICTED: potassium transporter 2-like isoform X1 [Solanum tuberosum] ref|XP_00 |
This contig is upended
. : . : . : . : . : . :
rJMSF035F14+ GTCCCTTTCATCCCCCC
____________________________________________________________
consensus GTCCCTTTCATCCCCCC
. : . : . : . : . : . :
rJMSF035F14+ AGCCGAGCGGTACCTCGTGGGGCGCGTTGGACCGCCCTCCCACCGNTCCTACAGGTGCAT
rJMSF051F19+ CTACAGGTGCAT
rJMSF038J23+ CTACAGGTGCAT
rJMSF043F05+ GACCGCCCTCCCACCGCTCCTACAGGTGCAT
____________________________________________________________
consensus AGCCGAGCGGTACCTCGTGGGGCGCGTTGGACCGCCCTCCCACCGCTCCTACAGGTGCAT
. : . : . : . : . : . :
rJMSF035F14+ CGTGCGGTATGGCTACCGGGACGTTCACCAGGATGTAGACTTCTTCGAAACCGAACTCGT
rJMSF051F19+ CGTGCGGTATGGCTACCGGGACGTTCACCAGGATGTAGACTTCTTCGAAACCGAACTCGT
rJMSF038J23+ CGTGCGGTATGGCTACCGGGACGTTCACCAGGATGTAGACTTNTTNGAAACCGAACTCGT
rJMSF043F05+ CGTGCGGTATGGCTACCGGGACGTTCACCAGGATGTAGACTTCTTCGAAACCGAACTCGT
____________________________________________________________
consensus CGTGCGGTATGGCTACCGGGACGTTCACCAGGATGTAGACTTCTTCGAAACCGAACTCGT
. : . : . : . : . : . :
rJMSF035F14+ CAGTAAGCTTGCTGATTTCATCCGCTACGACTGGTACAAGACGAACGGGATCATCACCTC
rJMSF051F19+ CAGTAAGCTTGCTGATTTCATCCGCTACGACTGGTACAAGACGAACGGGATCATCACCTC
rJMSF038J23+ CAGTAAGCTTGNTGATTTCATCCGCTNCGACTGGTACAAGACGAACGGGATCATCNCCTC
rJMSF043F05+ CAGTAAGCTTGCTGATTTCATCCGCTACGACTGGTACAAGACGAACGGGATCATCACCTC
____________________________________________________________
consensus CAGTAAGCTTGCTGATTTCATCCGCTACGACTGGTACAAGACGAACGGGATCATCACCTC
. : . : . : . : . : . :
rJMSF035F14+ ACCGAACGACGACGATGGGTCTCGTTCTGGTGCATCGTCAAGCGAATACCGGTTAGCAGT
JMFN009K01- GTTAGCAGT
rJMSF051F19+ ACCGAACGACGACGATGGGTCTCGTTCTGGTGCATCGTCAAGCGAATACCGGTTAGCAGT
rJMSF038J23+ ACCGAACGACGACGATGGGTCTCGTTCTGGTGCATCGTCAAGCGAATACCGGTTAGCAGT
rJMSF043F05+ ACCGAACGACGACGATGGGTCTCGTTCTGGTGCATCGTCAAGCGAATACCGGTTAGCAGT
____________________________________________________________
consensus ACCGAACGACGACGATGGGTCTCGTTCTGGTGCATCGTCAAGCGAATACCGGTTAGCAGT
. : . : . : . : . : . :
rJMSF035F14+ GATAGGAACCATGGCTTTCCCGGGCACACCCGCCTTTGAAATCGAGGAAACCGCCCAACC
JMFN009K01- GATAGGAACCATGGCTTTCCCGGGCACACCCGCCTTTGAAATCGAGGAAACCGCCCAACC
rJMSF051F19+ GATAGGAACCATGGCTTTCCCGGGCACACCCGCCTTTGAAATCGAGGAAACCGCCCAACC
rJMSF038J23+ GATAGGAACCATGGCTTTCCCGGGCACACCCGCCTTTGAAATCGAGGAAACCGCCCAACC
rJMSF043F05+ GATAGGAACCATGGCTTTCCCGGGCACACCCGCCTTTGAAATCGAGGAAACCGCCCAACC
____________________________________________________________
consensus GATAGGAACCATGGCTTTCCCGGGCACACCCGCCTTTGAAATCGAGGAAACCGCCCAACC
. : . : . : . : . : . :
rJMSF035F14+ CGAGAGCGTTTCCTTCGGTTTCCCCACCGCCGAGAGCCTAACCGACATCATCGAGATGCA
JMFN009K01- CGAGAGCGTTTCCTTCGGTTTCCCCACCGCCGAGAGCCTAACCGACATCATCGAGATGCA
rJMSF051F19+ CGAGAGCGTTTCCTTCGGTTTCCCCACCGCCGAGAGCCTAACCGACATCATCGAGATGCA
rJMSF038J23+ CGAGAGCGTTTCCTTCGGTTTCCCCACCGCCGAGAGCCTAACCGACATCATCGAGATGCA
rJMSF043F05+ CGAGAGCGTTTCCTTCGGTTTCCCCACCGCCGAGAGCCTAACCGACATCATCGAGATGCA
____________________________________________________________
consensus CGAGAGCGTTTCCTTCGGTTTCCCCACCGCCGAGAGCCTAACCGACATCATCGAGATGCA
. : . : . : . : . : . :
rJMSF035F14+ ACCAACCACAACAGCAGCATTAGCAGCAGAGAAAAGGGTGAGATTTGCTGTTGATGACTC
JMFN009K01- ACCAACCACAACAGCAGCATTAGCAGCAGAGAAAAGGGTGAGATTTGCTGTTGATGACTC
rJMSF051F19+ ACCAACCACAACAGCAGCATTAGCAGCAGAGAAAAGGGTGAGATTTGCTGTTGATGACTC
rJMSF038J23+ ACCAACCACAACAGCAGCATTAGCAGCAGAGAAAAGGGTGAGATTTGCTGTTGATGACTC
rJMSF043F05+ ACCAACCACAACAGCAGCATTAGCAGCAGAGAAAAGGGTGAGATTTGCTGTTGATGACTC
____________________________________________________________
consensus ACCAACCACAACAGCAGCATTAGCAGCAGAGAAAAGGGTGAGATTTGCTGTTGATGACTC
. : . : . : . : . : . :
rJMSF035F14+ AGAACCAGACTCACACTCACACCAAGAAATGGACATTCAGCTTCAAGAAGAGCTGAGGGA
JMFN009K01- AGAACCAGACTCACACTCACACCAAGAAATGGACATTCAGCTTCAAGAAGAGCTGAGGGA
rJMSF051F19+ AGAACCAGACTCACACTCACACCAAGAAATGGACATTCAGCTTCAAGAAGAGCTGAGGGA
rJMSF038J23+ AGAACCAGACTCACACTCACACCAAGAAATGGACATTCAGCTTCAAGAAGAGCTGAGGGA
rJMSF043F05+ AGAACCAGACTCACACTCACACCAAGAAATGGACATTCAGCTTCAAGAAGAGCTGAGGGA
____________________________________________________________
consensus AGAACCAGACTCACACTCACACCAAGAAATGGACATTCAGCTTCAAGAAGAGCTGAGGGA
. : . : . : . : . : . :
rJMSF035F14+ TCTCCACGAAGCCCGAGAAGCCGGGATTGCCTTCATTCTCGGGCACTCACACGTAAGAAC
JMFN009K01- TCTCCACGAAGCCCGAGAAGCCGGGATTGCCTTCATTCTCGGGCACTCACACGTAAGAAC
rJMSF051F19+ TCTCCACGAAGCCCGAGAAGCCGGGATTGCCTTCATTCTCGGGCACTCACACGTAAGAAC
rJMSF038J23+ TCTCCACGAAGCCCGAGAAGCCGGGATTGCCTTCATTCTCGGGCACTCACACGTAAGAAC
rJMSF043F05+ TCTCCACGAAGCCCGAGAAGCCGGGATTGCCTTCATTCTCGGGCACTCACACGTAAGAAC
____________________________________________________________
consensus TCTCCACGAAGCCCGAGAAGCCGGGATTGCCTTCATTCTCGGGCACTCACACGTAAGAAC
. : . : . : . : . : . :
rJMSF035F14+ AAAGCAAGGCTCATCCATATTCAAGAGATTAGCCATCAACTTTGGGTACAATCTCCTGAA
JMFN009K01- AAAGCAAGGCTCATCCATATTCAAGAGATTAGCCATCAACTTTGGGTACAATCTCCTGAA
rJMSF051F19+ AAAGCAAGGCTCATCCATATTCAAGAGATTAGCCATCAACTTTGGGTACAATCTCCTGAA
rJMSF038J23+ AAAGCAAGGCTCATCCATATTCAAGAGATTAGCCATCAACTTTGGGTACAATCTCCTGAA
rJMSF043F05+ AAAGCAAGGCTCATCCATATTCAAGAGATTAGCCATCAACTTTGGGTACAATCTCCTGAA
____________________________________________________________
consensus AAAGCAAGGCTCATCCATATTCAAGAGATTAGCCATCAACTTTGGGTACAATCTCCTGAA
. : . : . : . : . : . :
rJMSF035F14+ GAGAAACTGCAGAGGGCCAGATGTATCCCTTAAAGTCCCTCCAGTGTCCCTTCTTGAGGT
JMFN009K01- GAGAAACTGCAGAGGGCCAGATGTATCCCTTAAAGTCCCTCCAGTGTCCCTTCTTGAGGT
rJMSF051F19+ GAGAAACTGCAGAGGGCCAGATGTATCCCTTAAAGTCCCTCCAGTGTCCCTTCTTGAGGT
rJMSF038J23+ GAGAAACTGCAGAGGGCCAGATGTATCCCTTAAAGTCCCTCCAGTGTCCCTTCTTGAGGT
rJMSF043F05+ GAGAAACTGCAGAGGGCCAGATGTATCCCTTAAAGTCCCTCCAGTGTCCCTTCTTGAGGT
____________________________________________________________
consensus GAGAAACTGCAGAGGGCCAGATGTATCCCTTAAAGTCCCTCCAGTGTCCCTTCTTGAGGT
. : . : . : . : . : . :
rJMSF035F14+ TGGGA-TGGTATATGTTGTCTGAGATGTAAA-TGATTGTAAGTTTTGCTTGTTTCTT
JMFN009K01- TGGGA-TGGTATATGTTGTCTGAGATGTAAA-TGATTGTAAGTTTTGCTTGTTTCTTTAC
rJMSF051F19+ TGGGA-TGGTATATGTTGTCTGAGATGTAAA-TGATTGTAAGTTTTGCTTGTTTCTTTAC
rJMSF038J23+ TGGGATTGGTATATGTTGTCTGAGATGTAAACTGATNGTAAGTTTTGCTTGTTTCTT
rJMSF043F05+ TGGGA-TGGTATATGTTGTCTGAGATGTAAA-TGATTGTAAGTTTTGCTTGTTTCTTTAC
____________________________________________________________
consensus TGGGA-TGGTATATGTTGTCTGAGATGTAAA-TGATTGTAAGTTTTGCTTGTTTCTTTAC
. : . : . : . : . : . :
JMFN009K01- ACTTTAATCTACTGATCTGATGCCCTTTTCAAG
rJMSF051F19+ ACTTTAATCTACTGATCTGATGCCCTTTTCAAGATCTGCAAGAATGT
rJMSF043F05+ ACTTTAATCTACTGATCTGATGCCCTTTTCAAGATCTGCAAGAATGTTAACTGCTCAGAT
____________________________________________________________
consensus ACTTTAATCTACTGATCTGATGCCCTTTTCAAGATCTGCAAGAATGTTAACTGCTCAGAT