Contig 012727:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF023M12+                                                               AAGACAA
                      ____________________________________________________________
consensus                                                                  AAGACAA
 
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rJMSF023M12+          TTAAGAGTTGACGTTGGGCAAGATAAACTGGGTGGAACCTGTTGGAACAGGTATTTGTCT
                      ____________________________________________________________
consensus             TTAAGAGTTGACGTTGGGCAAGATAAACTGGGTGGAACCTGTTGGAACAGGTATTTGTCT
 
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rJMSF023M12+          TGGGTCGTTGTCCAGAAATTTCCCAAATGTTACAACTCTGACTTTGGCCGCTGGGGTTTG
rJMSF042G23+                     CCAGAAATTTCCCAAATGTTACAACTCTGAC-TTGGCCGCTGGGGTTTG
                      ____________________________________________________________
consensus             TGGGTCGTTGTCCAGAAATTTCCCAAATGTTACAACTCTGACTTTGGCCGCTGGGGTTTG
 
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rJMSF023M12+          GTCTGAATTGGAGAGGCACCTCTGCCCTGAATGTTTGGAAGTTAGGACTAATATGTGGGG
rJMSF042G23+          GTNTGAATTGGAGAGGCACCTCTGCCCTGAATGTTTGGAAGTTAGGACTAATATGTGGGG
                      ____________________________________________________________
consensus             GTCTGAATTGGAGAGGCACCTCTGCCCTGAATGTTTGGAAGTTAGGACTAATATGTGGGG
 
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rJMSF023M12+          GTTGAAAGACATCACTGCATATCTAGTGCTAAATAATATTGATAGTACGCTATCATTCAT
rJMSF042G23+          GTTGAAAGACATCACTGCATATCTAGTGCTAAATAATATTGATAGTACGCTATCATTCAT
                      ____________________________________________________________
consensus             GTTGAAAGACATCACTGCATATCTAGTGCTAAATAATATTGATAGTACGCTATCATTCAT
 
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rJMSF023M12+          TAAAACAGTCTTGGAGAGTTGCCCTAATCTGTCAGACATAGCACTATTGATCCACTGTGA
rJMSF042G23+          TAAAACAGTCTTGGAGAGTTGCCCTAATCTGTCAGACATAGCACTATTGATCCACTGTGA
                      ____________________________________________________________
consensus             TAAAACAGTCTTGGAGAGTTGCCCTAATCTGTCAGACATAGCACTATTGATCCACTGTGA
 
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rJMSF023M12+          TGTTGTCTCCAACGTCTCTTGTAACCTCATTTCAAAGTGTGCAGCCTACTGCCCGGGGAT
rJMSF042G23+          TGTTGTCTCCAACGTCTCTTGTAACCTCATTTCAAAGTGTGCAGCCTACTGCCCGGGGAT
                      ____________________________________________________________
consensus             TGTTGTCTCCAACGTCTCTTGTAACCTCATTTCAAAGTGTGCAGCCTACTGCCCGGGGAT
 
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rJMSF023M12+          TAGATGGAGATGGGGAATGTGGAAAGAAGGAACAAAAGACGCTTGGATTTCCCATAGCCT
rJMSF042G23+          TAGATGGAGATGGGGAATGTGGAAAGAAGGAACAAAAGACGCTTGGATTTCCCATAGCCT
                      ____________________________________________________________
consensus             TAGATGGAGATGGGGAATGTGGAAAGAAGGAACAAAAGACGCTTGGATTTCCCATAGCCT
 
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rJMSF023M12+          ATAATAAGTTATTCCTCTCTTCGGTCTCTCTGCTCAAACTAGCTTCTTGGTAGGCAACAT
rJMSF042G23+          ATAATAAGTTATTCCTCTCTTCGGTCTCTCTGCTCAAACTAGCTTCTTGGTAGGCAACAT
                      ____________________________________________________________
consensus             ATAATAAGTTATTCCTCTCTTCGGTCTCTCTGCTCAAACTAGCTTCTTGGTAGGCAACAT
 
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rJMSF023M12+          CAATCATCTATGGTACATGATTGGACTGCCAATTAGTTCTCACCGGCTTCAGCTTTCTTC
rJMSF042G23+          CAATCATCTATGGTACATGATTGGACTGCCAATTAGTTCTCACCGGCTTCAGCTTTCTTC
                      ____________________________________________________________
consensus             CAATCATCTATGGTACATGATTGGACTGCCAATTAGTTCTCACCGGCTTCAGCTTTCTTC
 
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rJMSF023M12+          TCCCCATTGGATGATCAATATGTGCTTTTAGCCAGAAGTCCAGAACCATGGCTTTATATG
rJMSF042G23+          TCCCCATTGGATGATCAATATGTGCTTTTAGCCAGAAGTCCAGAACCATGGCTTTATATG
                      ____________________________________________________________
consensus             TCCCCATTGGATGATCAATATGTGCTTTTAGCCAGAAGTCCAGAACCATGGCTTTATATG
 
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rJMSF023M12+          ATCTGTGAATATGTTTGTTAGGCTATCGCGGCCTTCTTGAATCATACCTCCTCTCTACTG
rJMSF042G23+          ATCTGTGAATATGTTTGTTAGGCTATCGCGGCCTTCTTGAATCATACCTCCTCTCTACTG
                      ____________________________________________________________
consensus             ATCTGTGAATATGTTTGTTAGGCTATCGCGGCCTTCTTGAATCATACCTCCTCTCTACTG
 
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rJMSF023M12+          TGTAGAAGAAGCCAACAAGTCCTCCAGATTTTATAGTCATGTACATATTTGTTCAAAATT
rJMSF042G23+          TGTAGAAGAAGCCAACAAGTCCTCCAGATTTTATAGTCATGTACATATTTGTTCAAAATT
                      ____________________________________________________________
consensus             TGTAGAAGAAGCCAACAAGTCCTCCAGATTTTATAGTCATGTACATATTTGTTCAAAATT
 
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rJMSF023M12+          CGAATACAAGTTCTCATAGGAAAAATGTTATATCCTCTTGTTATTT              
rJMSF042G23+          CGAATACAAGTTCTCATAGGAAAAATGTTATATCCTCTTGTTATTTTCCATTCTCAAAAC
                      ____________________________________________________________
consensus             CGAATACAAGTTCTCATAGGAAAAATGTTATATCCTCTTGTTATTTTCCATTCTCAAAAC