Contig 012720:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008B22Sequence306012720 (3)763012720 (3)ref|XP_009589699.1|3e-24PREDICTED: protein TIFY 10B-like isoform X1 [Nicotiana tomentosiformis]
JMSF041D23Sequence691008467 (2)ref|XP_004247155.1|9e-105PREDICTED: probable F-box protein At1g60180 [Solanum lycopersicum] ref|XP_004247649012720 (3)ref|XP_009589702.1|9e-22PREDICTED: protein TIFY 10B-like isoform X3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMSF008B22-                                                               GATAATAT
                      ____________________________________________________________
consensus                                                                 GATAATAT
 
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JMSF008B22-           TTTTATTTTCTTTCTTTTAAAATTATTTTCTGGGAATCGAAGATCGAAGATGAAAAAGGG
rJMSF008B22+                                                       GAAGATGAAAAAGGG
                      ____________________________________________________________
consensus             TTTTATTTTCTTTCTTTTAAAATTATTTTCTGGGAATCGAAGATCGAAGATGAAAAAGGG
 
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JMSF008B22-           AGCTAAAAAGGAGAAAAATTTGAAGGTGAAGTTGAACCAGAAGAGCTCCCCAGAAATGGT
rJMSF008B22+          AGCTAAAAAGGAG-AAAATTTGAAGGTGAAGTTGAACCAGAAGAGCTCCCCAGAAATGGT
                      ____________________________________________________________
consensus             AGCTAAAAAGGAGAAAAATTTGAAGGTGAAGTTGAACCAGAAGAGCTCCCCAGAAATGGT
 
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JMSF008B22-           GAAACAACAGTCCAACACTAGTCCAGGCGGCTCAGCGATGCAGTGGCCGTTTTCGTATTT
rJMSF008B22+          GAAACAACAGTCCAACACTAGTCCAGGCGGCTCAGCGATGCAGTGGCCGTTTTCGTATTT
                      ____________________________________________________________
consensus             GAAACAACAGTCCAACACTAGTCCAGGCGGCTCAGCGATGCAGTGGCCGTTTTCGTATTT
 
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JMSF008B22-           TGTTTCTCCGCCACCGGAATTATCGCTTTCCACAGCCCCTCCGCCACAGAATCTTGTCTT
rJMSF008B22+          TGTTTCTCCGCCACCGGAATTATCGCTTTCCACAGCCCCTCCGCCACAGAATCTTGTCTT
                      ____________________________________________________________
consensus             TGTTTCTCCGCCACCGGAATTATCGCTTTCCACAGCCCCTCCGCCACAGAATCTTGTCTT
 
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JMSF008B22-           TCAGGACTTTTTAGGGGGAACACTCCCTAGATATGAGCATGATACTCCTAGCAGCTCA  
rJMSF008B22+          TCAGGACTTTTTAGGGGGAACACTCCCTAGATATGAGCATGATACTCCTAGCAGCTCAAA
rJMSF041D23+                     TAGGGGGNACACTCCCTAGATATGAGCATGATACTCCTAGCAGCTCCAA
                      ____________________________________________________________
consensus             TCAGGACTTTTTAGGGGGAACACTCCCTAGATATGAGCATGATACTCCTAGCAGCTCAAA
 
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rJMSF008B22+          CCAACAGGCTACAGCCCCAATGACCATCTTCTACTCCGGTGGGGTTCATTTTTTTAACCA
rJMSF041D23+          CCAACAGGCTACAGCCCCAATGACCATCTTCTACTCCGGTGGGGTTCATTTTTTTAACCA
                      ____________________________________________________________
consensus             CCAACAGGCTACAGCCCCAATGACCATCTTCTACTCCGGTGGGGTTCATTTTTTTAACCA
 
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rJMSF008B22+          TATCTCCCCACAAAAGGCTGAGTTGATCATGAAGATGGTTAATCAATCCAAGACTGAGGC
rJMSF041D23+          TATCTCCCCACAAAAGGCTGAGTTGATCATGAAGATGGTTAATCAATCCAAGACTGAGGC
                      ____________________________________________________________
consensus             TATCTCCCCACAAAAGGCTGAGTTGATCATGAAGATGGTTAATCAATCCAAGACTGAGGC
 
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rJMSF008B22+          CATGAATATTGAAACTATAAACGCTCTAACTGAAACAGAAATTCTAAGTCAAAATATACA
rJMSF041D23+          CATGAATATTGAAACTATAAACGCTCTAACTGAAACAGAAATTCTAAGTCAAAATATACA
                      ____________________________________________________________
consensus             CATGAATATTGAAACTATAAACGCTCTAACTGAAACAGAAATTCTAAGTCAAAATATACA
 
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rJMSF008B22+          AACTCTCGCTCCTCCTCCTCCTCCTGACAATTTTTTCGAATTTTATGGTAAAGGAGCATT
rJMSF041D23+          AACTCTCGCTCCTCCTCCTCCTCCTGACAATTTTTTCGAATTTTATGGTAAAGGAGCATT
                      ____________________________________________________________
consensus             AACTCTCGCTCCTCCTCCTCCTCCTGACAATTTTTTCGAATTTTATGGTAAAGGAGCATT
 
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rJMSF008B22+          GGCTATGGCTCGCAAAGCAACCTTGGCCAGATTCTTGGAGAAGCGCAAACACAGATTGAT
rJMSF041D23+          GGCTATGGCTCGCAAAGCAACCTTGGCCAGATTCTTGGAGAAGCGCAAACACAGATTGAT
                      ____________________________________________________________
consensus             GGCTATGGCTCGCAAAGCAACCTTGGCCAGATTCTTGGAGAAGCGCAAACACAGATTGAT
 
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rJMSF008B22+          CTATGCTGGGAGTCCATATAGCCACCCTGTAGGCAAATCATCCAACATTATCTCCCCACA
rJMSF041D23+          CTATGCTGGGAGTCCATATAGCCACCCTGTAGGCAAATCATCCAACATTATCTCCCCACA
                      ____________________________________________________________
consensus             CTATGCTGGGAGTCCATATAGCCACCCTGTAGGCAAATCATCCAACATTATCTCCCCACA
 
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rJMSF008B22+          ACCACCCAAGAATAATGCATTATTGGAGTTCAATTTTATGCTTCCAGAGGAAGAGGAAAC
rJMSF041D23+          ACCACCCAAGAATAATGCATTATTGGAGTTCAATTTTATGCTTCCAGAGGAAGAGGAAAC
                      ____________________________________________________________
consensus             ACCACCCAAGAATAATGCATTATTGGAGTTCAATTTTATGCTTCCAGAGGAAGAGGAAAC
 
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rJMSF008B22+          TTCTTCATCAGCTGTCGATTTGGAAAGCAGATGTAGTACAAGTATTTTGTAATTTCTTTT
rJMSF041D23+          TTCTTCATCAGCTGTCGATTTGGAAAGCAGATGTAGTACAAGTATTTTGTAATTTCTTTT
                      ____________________________________________________________
consensus             TTCTTCATCAGCTGTCGATTTGGAAAGCAGATGTAGTACAAGTATTTTGTAATTTCTTTT
 
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rJMSF008B22+          CTTAATATTTATAATCCTAGGATAATA                                 
rJMSF041D23+          CTTAATATTTATAATCCTAGGATAATATAATACAATATTATTATATTAGTGGAGATCATT
                      ____________________________________________________________
consensus             CTTAATATTTATAATCCTAGGATAATATAATACAATATTATTATATTAGTGGAGATCATT
 
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rJMSF041D23+          ATATTGACCCTAAATGGTACTCGTACTACTCCTATTTTGGTATTACAATACTCTGCATTT
                      ____________________________________________________________
consensus             ATATTGACCCTAAATGGTACTCGTACTACTCCTATTTTGGTATTACAATACTCTGCATTT