Contig 012706:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010B17Sequence571012706 (4)ref|XP_006362148.1|1e-62PREDICTED: VIN3-like protein 2-like [Solanum tuberosum]705012706 (4)ref|XP_006362148.1|3e-64PREDICTED: VIN3-like protein 2-like [Solanum tuberosum]
JMFF049I13Sequence532012706 (4)ref|XP_006362148.1|7e-55PREDICTED: VIN3-like protein 2-like [Solanum tuberosum]
JMSF039D23Sequence652022198ref|XP_009799194.1|4e-92PREDICTED: VIN3-like protein 2 isoform X1 [Nicotiana sylvestris]819012706 (4)ref|XP_006366900.1|8e-53PREDICTED: VIN3-like protein 2-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF010B17- ATTAACCTAGATGAGATGAGGTTTGCAATTGAATTGTATCCTCCTCATCGATCAGCTC
rJMSF039D23- GGTTTGCAATTGAATTGTATCCTCCTCATCGATCAGCTC
                      ____________________________________________________________
consensus ATTAACCTAGATGAGATGAGGTTTGCAATTGAATTGTATCCTCCTCATCGATCAGCTC
 
. : . : . : . : . : . :
JMFF010B17+ GATGATGGAGTTGAATT
rJMFF010B17- CTAATAAGAGAAGAGAAGAGAATAGAAAGCTAGGGGGTCTAGGGATGATGGAGTTGAATT
rJMSF039D23- CTAATAAGAGAAGAGAAGAGAATAGAAAGCTAGGGGGTCTAGGGATGATGGAGTTGAATT
                      ____________________________________________________________
consensus CTAATAAGAGAAGAGAAGAGAATAGAAAGCTAGGGGGTCTAGGGATGATGGAGTTGAATT
 
. : . : . : . : . : . :
JMFF010B17+ CAGTGCCAAAGCTTAAGGCAAAAGCCTGCAGGCACCATAGAAGACTTCTTGTTTGAGATG
JMFF049I13+ CATAGAAGACTTCTTGTTTGAGATG
rJMFF010B17- CAGTGCCAAAGCTTAAGGCAAAAGCCTGCAGGCACCATAGAAGACTTCTTGTTTGAGATG
rJMSF039D23- CAGTGCCAAAGCTTAAGGCAAAAGCCTGCAGGCACCATAGAAGACTTCTTGTTTGAGATG
                      ____________________________________________________________
consensus CAGTGCCAAAGCTTAAGGCAAAAGCCTGCAGGCACCATAGAAGACTTCTTGTTTGAGATG
 
. : . : . : . : . : . :
JMFF010B17+ ACATCTGAGAAGCTGTGAACCAACTGCCCAGCCAATGATTCTGGATCTTCAATAAGTGTA
JMFF049I13+ ACATCTGAGAAGCTGTGAACCAACTGCCCAGCCAATGATTCTGGATCTTCAATAAGTGTA
rJMFF010B17- ACATCTGAGAAGCTGTGAACCAACTGCCCAGCCAATGATTCTGGATCTTCAATAAGTGTA
rJMSF039D23- ACATCTGAGAAGCTGTGAACCAACTGCCCAGCCAATGATTCTGGATCTTCAATAAGTGTA
                      ____________________________________________________________
consensus ACATCTGAGAAGCTGTGAACCAACTGCCCAGCCAATGATTCTGGATCTTCAATAAGTGTA
 
. : . : . : . : . : . :
JMFF010B17+ TCTACAAATGCCTTCACTACCCTAACCTCTTGACCACTTGCTCTCAAACTGTACCACGTC
JMFF049I13+ TCTACAAATGCCTTCACTACCCTAACCTCTTGACCACTTGCTCTCAAACTGTACCACGTC
rJMFF010B17- TCTACAAATGCCTTCACTACCCTAACCTCTTGACCACTTGCTCTCAAACTGTACCACGTC
rJMSF039D23- TCTACAAATGCCTTCACTACCCTAACCTCTTGACCACTTGCTCTCAAACTGTACCACGTC
                      ____________________________________________________________
consensus TCTACAAATGCCTTCACTACCCTAACCTCTTGACCACTTGCTCTCAAACTGTACCACGTC
 
. : . : . : . : . : . :
JMFF010B17+ AAGAACTTCTGCCTAAATTCCATCTCAATATGCCCACTGCATTCTAACCATCTGATTACT
JMFF049I13+ AAGAACTTCTGCCTAAATTCCATCTCAATATGCCCACTGCATTCTAACCATCTGATTACT
rJMFF010B17- AAGAACTTCTGCCTAAATTCCATCTCAATATGCCCACTGCATTCTAACCATCTGATTACT
rJMSF039D23- AAGAACTTCTGCCTAAATTCCATCTCAATATGCCCACTGCATTCTAACCATCTGATTACT
                      ____________________________________________________________
consensus AAGAACTTCTGCCTAAATTCCATCTCAATATGCCCACTGCATTCTAACCATCTGATTACT
 
. : . : . : . : . : . :
JMFF010B17+ TTCACATAGTATTCAAAATCATCCTTGTCCCCACCACATTGTTTATCAAACCTTTCGCTG
JMFF049I13+ TTCACATAGTATTCAAAATCATCCTTGTCCCCACCACATTGTTTATCAAACCTTTCGCTG
rJMFF010B17- TTCACATAGTATTCAAAATCATCCTTGTCCCCACCACATTGTTTATCAAACCTTTCGCTG
rJMSF039D23- TTCACATAGTATTCAAAATCATCCTTGTCCCCACCACATTGTTTATCAAACCTTTCGCTG
                      ____________________________________________________________
consensus TTCACATAGTATTCAAAATCATCCTTGTCCCCACCACATTGTTTATCAAACCTTTCGCTG
 
. : . : . : . : . : . :
JMFF010B17+ CTTCTCTTCTTCGACGAGCTCCCACCTCGCGGATGATCCTCCTTTCCACACCCATTCTCC
JMFF049I13+ CTTCTCTTCTTCGACGAGCTCCCACCTCGCGGATGATCCTCCTTTCCACACCCATTCTCC
rJMFF010B17- CTTCTCTTCTTCGACGAGCTCCCACCTCGCGGATGATCCTCCTTTCCACACCCATTCTCC
rJMSF039D23- CTTCTCTTCTTCGACGAGCTCCCACCTCGCGGATGATCCTCCTTTCCACACCCATTCTCC
                      ____________________________________________________________
consensus CTTCTCTTCTTCGACGAGCTCCCACCTCGCGGATGATCCTCCTTTCCACACCCATTCTCC
 
. : . : . : . : . : . :
JMFF010B17+ ACATCCTTTCCACTGCCTTGGAGGAATCTACCTTTTCGTCCAAGGAAGTCCATGCTCTCT
JMFF049I13+ ACATCCTTTCCACTGCCTTGGAGGAATCTACCTTTTCGTCCAAGGAAGTCCATGCTCTCT
rJMFF010B17- ACATCCTTTCCACTGCCTTGGAGGAATCTACCTTTTCGTCCAAGGAAGTCCATGCTCTCT
rJMSF039D23- ACATCCTTTCCACTGCCTTGGAGGAATCTACCTTTTCGTCCAAGGAAGTCCATGCTCTCT
                      ____________________________________________________________
consensus ACATCCTTTCCACTGCCTTGGAGGAATCTACCTTTTCGTCCAAGGAAGTCCATGCTCTCT
 
. : . : . : . : . : . :
JMFF010B17+ GTCTTGTAAGGCGTGATGGGCAAG-CCCCCCGCTTCCAAGTTACCTCCAGAATGCTCCAG
JMFF049I13+ GTCTTGTAAGGCGTGATGGGCAAG-CCCCCCGCTTCCAAGTTACCTCCAGAATGCTCCAG
rJMFF010B17- GTCTTGTAAGGCGTGATGGGCAAG-CCCCCCGCTTCCAAGTTACCTCCAGAATGCTCCAG
rJMSF039D23- GTCTTGTAAGGCGTGATGGGCAAGCCCCCCCGCTTCCAAGTTACCTCCAGAATGCTCCAG
                      ____________________________________________________________
consensus GTCTTGTAAGGCGTGATGGGCAAG-CCCCCCGCTTCCAAGTTACCTCCAGAATGCTCCAG
 
. : . : . : . : . : . :
JMFF010B17+ GATGGTTTCAGGAGGAGTGTTTGATCCATTGCCGGTGCTAGTCTCTTCTGCTATTTGTGC
JMFF049I13+ GATGGTTTCAGGAGGAGTGTTTGATCCATTGCCGGTGCTAGTCTCTTCTGCTATTTGTGC
rJMFF010B17- GATGGTTTCAGGAGGAGTGTTTGATCCATTGCCGGTGCTAGTCTCTTCTGCTATTTGTGC
rJMSF039D23- GATGGTTTCAGGAGGAGTGTTTGATCCATTGCCGGTGCTAGTCTCTTCTGCTATTTGTGC
                      ____________________________________________________________
consensus GATGGTTTCAGGAGGAGTGTTTGATCCATTGCCGGTGCTAGTCTCTTCTGCTATTTGTGC
 
. : . : . : . : . : . :
JMFF010B17+ ATCTGGAGAATCCTT
JMFF049I13+ ATCTGGAGAATCCTTGTTCTC
rJMFF010B17- ATCTGGAGAATCCTTGTTCTC
rJMSF039D23- ATCTGGAGAATCCTTGTTCTCAACATCTATCACATCTGTTGTATGCCGTGTGGAGCTACT
                      ____________________________________________________________
consensus ATCTGGAGAATCCTTGTTCTCAACATCTATCACATCTGTTGTATGCCGTGTGGAGCTACT
 
. : . : . : . : . : . :
rJMSF039D23- AAAATTTCGCATGCTGGGCTCCTCCCCTCCCAAACATGGCTTTACTGTCATCATCGNTGC
                      ____________________________________________________________
consensus AAAATTTCGCATGCTGGGCTCCTCCCCTCCCAAACATGGCTTTACTGTCATCATCGNTGC
 
. : . : . : . : . : . :
rJMSF039D23- TGCTGCTTTAGGGCTTTTACCCTCGCAGCATAATAGATTCGTAGAGGTGATATTATCAGT
                      ____________________________________________________________
consensus TGCTGCTTTAGGGCTTTTACCCTCGCAGCATAATAGATTCGTAGAGGTGATATTATCAGT