| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF012A20 | Sequence | 250 | 009467 (7) | gb|AIU96237.1| | 4e-08 | serine/threonine-protein kinase BIK1, partial [Nicotiana benthamiana] | 785 | 012699 (3) | ref|XP_009759469.1| | 7e-70 | PREDICTED: protein kinase APK1A, chloroplastic-like [Nicotiana sylvestris] |
| JMSF037H23 | Sequence | 649 | 009467 (7) | ref|XP_009759469.1| | 1e-93 | PREDICTED: protein kinase APK1A, chloroplastic-like [Nicotiana sylvestris] | 576 | 012699 (3) | emb|CDP00097.1| | 2e-16 | unnamed protein product [Coffea canephora] |
| JMSF038H23 | Sequence | 679 | 009467 (7) | ref|XP_004236745.1| | 1e-101 | PREDICTED: protein kinase APK1A, chloroplastic [Solanum lycopersicum] | 869 | 012699 (3) | ref|XP_009759469.1| | 2e-68 | PREDICTED: protein kinase APK1A, chloroplastic-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF038H23+ CGAACANTTTTGCTTGATTCTAATTACAA
____________________________________________________________
consensus CGAACANTTTTGCTTGATTCTAATTACAA
. : . : . : . : . : . :
rJMSF012A20+ GGGCCGATTGATGGAAAGAGTCAC
rJMSF038H23+ CGCAAAGCTTTCTGATTTTGGATTNGGCTAAGGACGGGGCCGATTGATGGAAAGAGTCAC
____________________________________________________________
consensus CGCAAAGCTTTCTGATTTTGGATTNGGCTAAGGACGGGGCCGATTGATGGAAAGAGTCAC
. : . : . : . : . : . :
rJMSF012A20+ GTCTCGACAAGAGTGATGGGTACATACGGCTATGCAGCTCCAGAGTACATGGCCACAGGC
rJMSF038H23+ GTCTCGACAAGAGTGATGGGTACATACGGCTATGCAGCTCCAGAGTACATGGCCACAGGC
____________________________________________________________
consensus GTCTCGACAAGAGTGATGGGTACATACGGCTATGCAGCTCCAGAGTACATGGCCACAGGC
. : . : . : . : . : . :
rJMSF012A20+ CATTTAACGACTAGAAGCGACGTGTACAGTTTTGGGGTTGTGCTTCTTGAAATGCTGACA
rJMSF038H23+ CATTTAACGACTAGAAGCGACGTGTACAGTTTTGGGGTTGTGCTTCTTGAAATGCTGACA
____________________________________________________________
consensus CATTTAACGACTAGAAGCGACGTGTACAGTTTTGGGGTTGTGCTTCTTGAAATGCTGACA
. : . : . : . : . : . :
rJMSF012A20+ GGGCGTCGGGCAGTGGACAAAAACCGCCCAAATGGGGAGCAGAACCTCATCGAATGGGCC
rJMSF038H23+ GGGCGTCGGGCAGTGGACAAAAACCGCCCAAATGGGGAGCAGAACCTCATCGAATGGGCC
____________________________________________________________
consensus GGGCGTCGGGCAGTGGACAAAAACCGCCCAAATGGGGAGCAGAACCTCATCGAATGGGCC
. : . : . : . : . : . :
rJMSF012A20+ AAGCCTTACCTCGCGAGCAAGCGGAGAATCCTGAGAGTAATGGATCCACGCATAGAAGGG
rJMSF037H23+ TCGCGAGCAAGCGGAGAATCCTGAGAGTAATGGATCCACGCATAGAAGGG
rJMSF038H23+ AAGCCTTACCTCGCGAGCAAGCGGAGAATCCTGAGAGTAATGGATCCACGCATAGAAGGG
____________________________________________________________
consensus AAGCCTTACCTCGCGAGCAAGCGGAGAATCCTGAGAGTAATGGATCCACGCATAGAAGGG
. : . : . : . : . : . :
rJMSF012A20+ CAGTACTCGTTGAGCGGGGCACTAAGGGCAGCACTTCTAGCTGTTAAATGTCTATCGATC
rJMSF037H23+ CAGTACTCGTTGAGCGGGGCACTAAGGGCAGCACTTCTAGCTGTTAAATGTCTATCGATC
rJMSF038H23+ CAGTACTCGTTGAGCGGGGCACTAAGGGCAGCACTTCTAGCTGTTAAATGTCTATCGATC
____________________________________________________________
consensus CAGTACTCGTTGAGCGGGGCACTAAGGGCAGCACTTCTAGCTGTTAAATGTCTATCGATC
. : . : . : . : . : . :
rJMSF012A20+ GAGCCGAAATACAGGCCGAACATGATTGAAGTGGTGAAGGAACTGGAACAACTTCAGGAC
rJMSF037H23+ GAGCCGAAATACAGGCCGAACATGATTGAAGTGGTGAAGGAACTGGAACAACTTCAGGAC
rJMSF038H23+ GAGCCGAAATACAGGCCGAACATGATTGAAGTGGTGAAGGAACTGGAACAACTTCAGGAC
____________________________________________________________
consensus GAGCCGAAATACAGGCCGAACATGATTGAAGTGGTGAAGGAACTGGAACAACTTCAGGAC
. : . : . : . : . : . :
rJMSF012A20+ TTGAAAGACACAGCAAACCAGAAAAACGAAGCTTCACGGAGGCACCACAACCGATCCTGC
rJMSF037H23+ TTGAAAGACACAGCAAACCAGAAAAACGAAGCTTCACGGAGGCACCACAACCGATCCTGC
rJMSF038H23+ TTGAAAGACACAGCAAACCAGAAAAACGAAGCTTCACGGAGGCACCACAACCGATCCTGC
____________________________________________________________
consensus TTGAAAGACACAGCAAACCAGAAAAACGAAGCTTCACGGAGGCACCACAACCGATCCTGC
. : . : . : . : . : . :
rJMSF012A20+ AGTGCCAACGAAGAGGCCTCGAGAAGAAGAGTGGCGTCTTATCCAAGACCACCCGCTTCT
rJMSF037H23+ AGTGCCAACGAAGAGGCCTCGAGAAGAAGAGTGGCGTCTTATCCAAGACCACCCGCTTCT
rJMSF038H23+ AGTGCCAACGAAGAGGCCTCGAGAAGAAGAGTGGCGTCTTATCCAAGACCACCCGCTTCT
____________________________________________________________
consensus AGTGCCAACGAAGAGGCCTCGAGAAGAAGAGTGGCGTCTTATCCAAGACCACCCGCTTCT
. : . : . : . : . : . :
rJMSF012A20+ CCCCGCCTTGCCGCCTGACCGGGCGGGGGAAGGGAAGGAAACCACTCTCCATGTACGTAC
rJMSF037H23+ CCCCGCCTTGCCGCCTGACCGGGCGGGGGAAGGGAAGGAAACCACTCTCCATGTACGTAC
rJMSF038H23+ CCCCGCCTTGCCGCCTGACCGGGCGGGGGAAGGGAAGGAAACCACTCTCCATGTACGTAC
____________________________________________________________
consensus CCCCGCCTTGCCGCCTGACCGGGCGGGGGAAGGGAAGGAAACCACTCTCCATGTACGTAC
. : . : . : . : . : . :
rJMSF012A20+ TACCTCGAGCAAAAATAAAAACGAAGAAACGAGCCTTGTCGGGTTGTGCAGCTCCTATTT
rJMSF037H23+ TACCTCGAGCAAAAATAAAAACGAAGAAACGAGCCTTGTCGGGTTGTGCAGCTCCTATTT
rJMSF038H23+ TACCTCGAGCAAAAATAAAAACGAAGAAACGAGCCTTGTCGGGTTGTGCAGCTCCTATTT
____________________________________________________________
consensus TACCTCGAGCAAAAATAAAAACGAAGAAACGAGCCTTGTCGGGTTGTGCAGCTCCTATTT
. : . : . : . : . : . :
rJMSF012A20+ TGGGTTGGTGGAAAATCTGTAGTTTGATGTTTTCTTCATGCATAAAGTTAGATATGAGAT
rJMSF037H23+ TGGGTTGGTGGAAAATCTGTAGTTTGATGTTTTCTTCATGCATAAAGTTAGATATGAGAT
rJMSF038H23+ TGGGTTGGTGGAAAATCTGTAGTTTGATGTTTTCTTCATGCATAAAGTTAGATATGAGAT
____________________________________________________________
consensus TGGGTTGGTGGAAAATCTGTAGTTTGATGTTTTCTTCATGCATAAAGTTAGATATGAGAT
. : . : . : . : . : . :
rJMSF012A20+ GTGTATGAAAGCAATTGCCAGAGGGATGCAATCTTCTTTTGTCATGCTTGTATGTCTATG
rJMSF037H23+ GTGTATGAAAGCAATTGCCAGAGGGATGCAATCTTCTTTTGTCATGCTTGTATGTCTATG
rJMSF038H23+ GTGTATGAAAGCAATTGCCAGAGGGATGCAATCTTCTTTTGTCATGCTTGTATGTCTATG
____________________________________________________________
consensus GTGTATGAAAGCAATTGCCAGAGGGATGCAATCTTCTTTTGTCATGCTTGTATGTCTATG
. : . : . : . : . : . :
rJMSF012A20+ AGAAGTTAGAATCTTTGTCCCAGTTATGAA
rJMSF037H23+ AGAAGTTAGAATCTTTGTCCCAGTTATGAAACATGTGAATTATGAG
rJMSF038H23+ AGAAGTTAGAATCTTTGTCCCAGTTATGAANCATGTGAATTATGAGAAATGTACATATAC
____________________________________________________________
consensus AGAAGTTAGAATCTTTGTCCCAGTTATGAAACATGTGAATTATGAGAAATGTACATATAC