clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF017O07 | Sequence | 405 | 012697 (4) | gb|KDP46757.1| | 2e-12 | hypothetical protein JCGZ_06545 [Jatropha curcas] | 687 | 012697 (4) | ref|XP_009611393.1| | 2e-44 | PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Nicotiana tomentosifo |
JMSF038H05 | Sequence | 673 | 012697 (4) | ref|XP_009611393.1| | 1e-44 | PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Nicotiana tomentosifo | 694 | 012697 (4) | ref|XP_009611393.1| | 2e-44 | PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Nicotiana tomentosifo |
This contig is upended
. : . : . : . : . : . :
JMSF038H05- GGGCTCAACTTTCAAGATAAGCTCCGCGTCTCATT
JMSF017O07- AACTTTCAAGATAAGCTCCGCGTCTCATT
rJMSF017O07+ AACTTTCAAGATAAGCTCCGCGTCTCATT
rJMSF038H05+ AACTTTCAAGATAAGCTCCGCGTCTCATT
____________________________________________________________
consensus GGGCTCAACTTTCAAGATAAGCTCCGCGTCTCATT
. : . : . : . : . : . :
JMSF038H05- ATTCAACTTGAATTTACCAAATCGCCACCATGATTTCCTTCTCCGCTTCTTCCAACTTCC
JMSF017O07- ATTCAACTTGAATTTACCAAATCGCCACCATGATTTCCTTCTCCGCTTCTTCCAACTTCC
rJMSF017O07+ ATTCAACTTGAATTTACCAAATCGCCACCATGATTTCCTTCTCCGCTTCTTCCAACTTCC
rJMSF038H05+ ATTCAACTTGAATTTACCAAATCGCCACCATGATTTCCTTCTCCGCTTCTTCCAACTTCC
____________________________________________________________
consensus ATTCAACTTGAATTTACCAAATCGCCACCATGATTTCCTTCTCCGCTTCTTCCAACTTCC
. : . : . : . : . : . :
JMSF038H05- TCCTCCAATCGCCGCCGCCCAGAGCCACCGCCTTCGCCGCCGACAATTCTCCTTCTCCGC
JMSF017O07- TCCTCCAATCGCCGCCGCCCAGAGCCACCGCCTTCGCCGCCGACAATTCTCCTTCTCCGC
rJMSF017O07+ TCCTCCAATCGCCGCCGCCCAGAGCCACCGCCTTCGCCGCCGACAATTCTCCTTCTCCGC
rJMSF038H05+ TCCTCCAATCGCCGCCGCCCAGAGCCACCGCCTTCGCCGCCGACAATTCTCCTTCTCCGC
____________________________________________________________
consensus TCCTCCAATCGCCGCCGCCCAGAGCCACCGCCTTCGCCGCCGACAATTCTCCTTCTCCGC
. : . : . : . : . : . :
JMSF038H05- CGTCGCCGTCGGTTGTTAAGTTCCGGCAGCCGCGGAGTTCGCCCGTCTGCGCGGTCGCAA
JMSF017O07- CGTCGCCGTCGGTTGTTAAGTTCCGGCAGCCGCGGAGTTCGCCCGTCTGCGCGGTCGCAA
rJMSF017O07+ CGTCGCCGTCGGTTGTTAAGTTCCGGCAGCCGCGGAGTTCGCCCGTCTGCGCGGTCGCAA
rJMSF038H05+ CGTCGCCGTCGGTTGTTAAGTTCCGGCAGCCGCGGAGTTCGCCCGTCTGCGCGGTCGCAA
____________________________________________________________
consensus CGTCGCCGTCGGTTGTTAAGTTCCGGCAGCCGCGGAGTTCGCCCGTCTGCGCGGTCGCAA
. : . : . : . : . : . :
JMSF038H05- CCGCGGCTTACGCCGAGGAGGAGACGGAAGCCGCCGCTTTTTCGTCGTCGCCGCCGTTGC
JMSF017O07- CCGCGGCTTACGCCGAGGAGGAGACGGAAGCCGCCGCTTTTTCGTCGTCGCCGCCGTTGC
rJMSF017O07+ CCGCGGCTTACGCCGAGGAGGAGACGGAAGCCGCCGCTTTTTCGTCGTCGCCGCCGTTGC
rJMSF038H05+ CCGCGGCTTACGCCGAGGAGGAGACGGAAGCCGCCGCTTTTTCGTCGTCGCCGCCGTTGC
____________________________________________________________
consensus CCGCGGCTTACGCCGAGGAGGAGACGGAAGCCGCCGCTTTTTCGTCGTCGCCGCCGTTGC
. : . : . : . : . : . :
JMSF038H05- ATCCGGAGATAAAATCGCCCTCCTCCGCGACGTCGTTTTACGAGATTCTCGGGATTCCGG
JMSF017O07- ATCCGGAGATAAAATCGCCCTCCTCCGCGACGTCGTTTTACGAGATTCTCGGGATTCCGG
rJMSF017O07+ ATCCGGAGATAAAATCGCCCTCCTCCGCGACGTCGTTTTACGAGATTCTCGGGATTCCGG
rJMSF038H05+ ATCCGGAGATAAAATCGCCCTCCTCCGCGACGTCGTTTTACGAGATTCTCGGGATTCCGG
____________________________________________________________
consensus ATCCGGAGATAAAATCGCCCTCCTCCGCGACGTCGTTTTACGAGATTCTCGGGATTCCGG
. : . : . : . : . : . :
JMSF038H05- TGGGAGCGACGAGCGAGGTGATCAAAGCGGCGTACCGGAGACTCGCTCGTGTCTGCCACC
JMSF017O07- TGGGAGCGACGAGCGAGGTGATCAAAGCGGCGTACCGGAGACTCGCTCGTGTCTGCCACC
rJMSF017O07+ TGGGAGCGACGAGCGAGGTGATCAAAGCGGCGTACCGGAGACTCGCTCGTGTCTGCCACC
rJMSF038H05+ TGGGAGCGACGAGCGAGGTGATCAAAGCGGCGTACCGGAGACTCGCTCGTGTCTGCCACC
____________________________________________________________
consensus TGGGAGCGACGAGCGAGGTGATCAAAGCGGCGTACCGGAGACTCGCTCGTGTCTGCCACC
. : . : . : . : . : . :
JMSF038H05- CCGACGTGGCGGGGAGTCGCCGTAAGGACGCCTCCGCCGACGAGTTCATGAAGATTCATA
JMSF017O07- CCGACGTGGCGGGGA
rJMSF017O07+ CCGACGTGGCGGGGAGTCGCCGTAAGGACGCCTCCGCCGACGAGTTCATGAAGATTCATA
rJMSF038H05+ CCGACGTGGCGGGGAGTCGCCGTAAGGACGCCTCCGCCGACGAGTTCATGAAGATTCATA
____________________________________________________________
consensus CCGACGTGGCGGGGAGTCGCCGTAAGGACGCCTCCGCCGACGAGTTCATGAAGATTCATA
. : . : . : . : . : . :
JMSF038H05- CTGCCTACTCCACGCTGTCGGATCCCGATAAACGCGCGGACTATGATCGGCAACTCTTCC
rJMSF017O07+ CTGCCTACTCCACGCTGTCGGATCCCGATAAACGCGCGGACTATGATCGGCAACTCTTCC
rJMSF038H05+ CTGCCTACTCCACGCTGTCGGATCCCGATAAACGCGCGGACTATGATCGGCAACTCTTCC
____________________________________________________________
consensus CTGCCTACTCCACGCTGTCGGATCCCGATAAACGCGCGGACTATGATCGGCAACTCTTCC
. : . : . : . : . : . :
JMSF038H05- TCCGTCGACGGAGTGTCAACTTATACTCGCCTACAATGTCATCGAGATTCACCGGAAATA
rJMSF017O07+ TCCGTCGACGGAGTGTCAACTTATACTCGCCTACAATGTCATCGAGATTCACCGGAAATA
rJMSF038H05+ TCCGTCGACGGAGTGTCAACTTATACTCGCCTACAATGTCATCGAGATTCACCGGAAATA
____________________________________________________________
consensus TCCGTCGACGGAGTGTCAACTTATACTCGCCTACAATGTCATCGAGATTCACCGGAAATA
. : . : . : . : . : . :
JMSF038H05- CTCGCCGGAATTGGGAGACCGATCAGTGCTGGTAGTGCCTTATAGAATTGAAGTGAATTA
rJMSF017O07+ CTCGCCGGAATTGGGAGACCGATCAGTGCTGGTAGTGCCTTATAGAATTGAAGTGAATTA
rJMSF038H05+ CTCGCCGGAATTGGGAGACCGATCAGTGCTGGTAGTGCCTTATAGAATTGAAGTGAATTA
____________________________________________________________
consensus CTCGCCGGAATTGGGAGACCGATCAGTGCTGGTAGTGCCTTATAGAATTGAAGTGAATTA
. : . : . : . : . : . :
JMSF038H05- GGATTAGAATTGTACAGTGTAC
rJMSF017O07+ GGATTAGAATTGTACAGTGTACCACTTGTGAGGCTACGACATAGCCAGAAAAAAAAT
rJMSF038H05+ GGATTAGAATTGTACAGTGTA-CACTTGTGAGGCTACGACATAGCCAGAAAAAAAATAAA
____________________________________________________________
consensus GGATTAGAATTGTACAGTGTACCACTTGTGAGGCTACGACATAGCCAGAAAAAAAATAAA