| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF008A12 | Sequence | 227 | 007988 (2) | 704 | 012694 (2) | gb|KDP34191.1| | 3e-50 | hypothetical protein JCGZ_07762 [Jatropha curcas] | |||
| JMSF038C09 | Sequence | 647 | 007988 (2) | ref|XP_009770568.1| | 3e-78 | PREDICTED: probable tocopherol cyclase, chloroplastic [Nicotiana sylvestris] | 925 | 012694 (2) | ref|XP_009367482.1| | 2e-96 | PREDICTED: tocopherol cyclase, chloroplastic-like [Pyrus x bretschneideri] ref|X |
This contig is upended
. : . : . : . : . : . :
rJMSF038C09+ TTCCCTAGAAAGGGGTTCTGGNTCCA
____________________________________________________________
consensus TTCCCTAGAAAGGGGTTCTGGNTCCA
. : . : . : . : . : . :
rJMSF038C09+ ATGCAATGTCTTTGAAGGTGCTGATGGAGAAGTTTCTTTAACTTCTGGCGGTGGATTAAG
____________________________________________________________
consensus ATGCAATGTCTTTGAAGGTGCTGATGGAGAAGTTTCTTTAACTTCTGGCGGTGGATTAAG
. : . : . : . : . : . :
rJMSF038C09+ GCAAATTCCTGGACCTGGAACAAGCGACAACTTTGAAAATGCTGCACTGATAGCAGTTCA
____________________________________________________________
consensus GCAAATTCCTGGACCTGGAACAAGCGACAACTTTGAAAATGCTGCACTGATAGCAGTTCA
. : . : . : . : . : . :
rJMSF038C09+ CTATGGAGGTGTCTCTTACGAATTTGTGCCATGGAATGGTTCTGTAACTTGGGAAATTTC
____________________________________________________________
consensus CTATGGAGGTGTCTCTTACGAATTTGTGCCATGGAATGGTTCTGTAACTTGGGAAATTTC
. : . : . : . : . : . :
rJMSF008A12+ AGGTGGAACTTGAAGC
rJMSF038C09+ TCCGTGGGGCCACTGGTACATAACTGCAGAGAATGCGACACACAAGGTGGAACTTGAAGC
____________________________________________________________
consensus TCCGTGGGGCCACTGGTACATAACTGCAGAGAATGCGACACACAAGGTGGAACTTGAAGC
. : . : . : . : . : . :
rJMSF008A12+ AAGAACGAGTGACCCGGGCACAACATTGCGTGCCCCTACTCAAGAGATGGGTCTTGCTCC
rJMSF038C09+ AAGAACGAGTGACCCGGGCACAACATTGCGTGCCCCTACTCAAGAGATGGGTCTTGCTCC
____________________________________________________________
consensus AAGAACGAGTGACCCGGGCACAACATTGCGTGCCCCTACTCAAGAGATGGGTCTTGCTCC
. : . : . : . : . : . :
rJMSF008A12+ TGTATGTCGAGATACTTGTTATGCTGACCTAAGACTGCAACTGTGGGAACGCCGCTATGA
rJMSF038C09+ TGTATGTCGAGATACTTGTTATGCTGACCTAAGACTGCAACTGTGGGAACGCCGCTATGA
____________________________________________________________
consensus TGTATGTCGAGATACTTGTTATGCTGACCTAAGACTGCAACTGTGGGAACGCCGCTATGA
. : . : . : . : . : . :
rJMSF008A12+ TGGCAGTAAAGGAAAGGCGATCTTGGATGTTACGAGTAACATGGCAGGTGTAGAAGTTGG
rJMSF038C09+ TGGCAGTAAAGGAAAGGCGATCTTGGATGTTACGAGTAACATGGCAGGTGTAGAAGTTGG
____________________________________________________________
consensus TGGCAGTAAAGGAAAGGCGATCTTGGATGTTACGAGTAACATGGCAGGTGTAGAAGTTGG
. : . : . : . : . : . :
rJMSF008A12+ AGGAGGACCATGGTTCAACACATGGAAAGGAACAACAAATGCACCAGAGATTCTCAAGCA
rJMSF038C09+ AGGAGGACCATGGTTCAACACATGGAAAGGAACAACAAATGCACCAGAGATTCTCAAGCA
____________________________________________________________
consensus AGGAGGACCATGGTTCAACACATGGAAAGGAACAACAAATGCACCAGAGATTCTCAAGCA
. : . : . : . : . : . :
rJMSF008A12+ AGCGCTTAACGCTCCAGTTGACATCGAAGGGATCTTTGGCCTGGTTCCGCTGTTTAAACC
rJMSF038C09+ AGCGCTTAACGCTCCAGTTGACATCGAAGGGATCTTTGTCCTGGTTCCGCTGTTTAAACC
____________________________________________________________
consensus AGCGCTTAACGCTCCAGTTGACATCGAAGGGATCTTTGTCCTGGTTCCGCTGTTTAAACC
. : . : . : . : . : . :
rJMSF008A12+ TCCCGGCTTATAGTTTACTGGTACATCGAAGGGTAGAGCTTTCGTAGTATGAAGGAAGAT
rJMSF038C09+ TCCCGGCTTATAGTTTACTGGTACATCGAAGGGTAGAGCTTTCGTAGTATGAAGGAAGAT
____________________________________________________________
consensus TCCCGGCTTATAGTTTACTGGTACATCGAAGGGTAGAGCTTTCGTAGTATGAAGGAAGAT
. : . : . : . : . : . :
rJMSF008A12+ TAAAAGGTCAGTCGAAGAACGCCGAACACCTTTGCTGAACAACACCCTGTATGTTTAGGT
rJMSF038C09+ TAAAAGGTCAGTCGAAGAACGCCGAACACCTTTGCTGAACAACACCCTGTATGTTTAGGT
____________________________________________________________
consensus TAAAAGGTCAGTCGAAGAACGCCGAACACCTTTGCTGAACAACACCCTGTATGTTTAGGT
. : . : . : . : . : . :
rJMSF008A12+ GGAAGGATGTTGTGCAGCTTCTATTCCATGATATATTCTTGATATAGCATCCATTGTCAG
rJMSF038C09+ GGAAGGATGTTGTGCAGCTTCTATTCCATGATATATTCTTGATATAGCATCCATTGTCAG
____________________________________________________________
consensus GGAAGGATGTTGTGCAGCTTCTATTCCATGATATATTCTTGATATAGCATCCATTGTCAG
. : . : . : . : . : . :
rJMSF008A12+ TTTAGATTGAGCATTGTAATGTGTTGTCTAGCCTATATCATTTTCATGGATGATGGATCC
rJMSF038C09+ TTTAGATTGAACATTGTAATGTGTTGTCTAGCCTATATCATTTTCATGGATGATGGATCC
____________________________________________________________
consensus TTTAGATTGAGCATTGTAATGTGTTGTCTAGCCTATATCATTTTCATGGATGATGGATCC
. : . : . : . : . : . :
rJMSF008A12+ CATACTGCTCTAGAAACTCTACAGCTACCAAGAGTCGGACATATTGTTGGTGAC
rJMSF038C09+ CATACTGCTCTAGAAACTCTACAGCTA-CAAGAGTCGGACATATTGTTGGTGACAGTAAT
____________________________________________________________
consensus CATACTGCTCTAGAAACTCTACAGCTACCAAGAGTCGGACATATTGTTGGTGACAGTAAT
. : . : . : . : . : . :
rJMSF038C09+ TGCAAAAATTTCTGCAGAACATCTTTCAGCATTGTTATATTGTGGACTAGGCCAGATTTA
____________________________________________________________
consensus TGCAAAAATTTCTGCAGAACATCTTTCAGCATTGTTATATTGTGGACTAGGCCAGATTTA