clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF022L17 | Sequence | 616 | 012680 (6) | ref|XP_002519556.1| | 7e-42 | conserved hypothetical protein [Ricinus communis] gb|EEF42970.1| conserved hypot | 763 | 012680 (6) | ref|XP_002519556.1| | 3e-49 | conserved hypothetical protein [Ricinus communis] gb|EEF42970.1| conserved hypot |
JMSF023L17 | Sequence | 647 | 012680 (6) | ref|XP_009601138.1| | 6e-49 | PREDICTED: uncharacterized protein LOC104096470 isoform X1 [Nicotiana tomentosi | 762 | 012680 (6) | ref|XP_002519556.1| | 6e-49 | conserved hypothetical protein [Ricinus communis] gb|EEF42970.1| conserved hypot |
JMSF035H06 | Sequence | 673 | 012680 (6) | ref|XP_009601138.1| | 8e-50 | PREDICTED: uncharacterized protein LOC104096470 isoform X1 [Nicotiana tomentosi | 742 | 012680 (6) | ref|XP_002519556.1| | 3e-43 | conserved hypothetical protein [Ricinus communis] gb|EEF42970.1| conserved hypot |
This contig is upended
. : . : . : . : . : . :
JMSF022L17- TGTTAGGTGTCATGGACTGTCTCTGGTTTT
JMSF023L17- GGTTGTTAGGTGTCATGGACTGTCTCTGGTTTT
JMSF035H06- TGTTAGGTGTCATGGACTGTCTCTGGTTTT
____________________________________________________________
consensus GGTTGTTAGGTGTCATGGACTGTCTCTGGTTTT
. : . : . : . : . : . :
JMSF022L17- ACCAGTCTATATTCTTTACAGAAACCCCTACAGTACTATGTCCAAAACCCCTTGAATCAC
JMSF023L17- ACCAGTCTATATTCTTTACAGAAACCCCTACAGTACTATGTCCAAAACCCCTTGAATCAC
JMSF035H06- ACCAGTCTATATTCTTTACAGAAACCCCTACAGTACTATGTCCAAAACCCCTTGAATCAC
____________________________________________________________
consensus ACCAGTCTATATTCTTTACAGAAACCCCTACAGTACTATGTCCAAAACCCCTTGAATCAC
. : . : . : . : . : . :
JMSF022L17- TTCAATATTCTCGAACCTCATCAATGGCAGGAAACGATTCATCTTCAACAGTTGATGAGA
JMSF023L17- TTCAATATTCTCGAACCTCATCAATGGCAGGAAACGATTCATCTTCAACAGTTGATGAGA
JMSF035H06- TTCAATATTCTCGAACCTCATCAATGGCAGGAAACGATTCATCTTCAACAGTTGATGAGA
rJMSF022L17+ ACCTCATCAATGGCAGGAAACGATTCATCTTCAACAGTTGATGAGA
rJMSF023L17+ TCATCAATNGCAGGAAACGATTCATCTTCAACAGNTGATGAGA
____________________________________________________________
consensus TTCAATATTCTCGAACCTCATCAATGGCAGGAAACGATTCATCTTCAACAGTTGATGAGA
. : . : . : . : . : . :
JMSF022L17- TAACTTCACAGGATGAAGATGTAGAAGAAGAAGAAGAAGCTAGGCAGAATGAGACCACAG
JMSF023L17- TAACTTCACAGGATGAAGATGTAGAAGAAGAAGAAGAAGCTAGGCAGAATGAGACCACAG
JMSF035H06- TAACTTCACAGGATGAAGATGTAGAAGAAGAAGAAGAAGCTAGGCAGAATGAGACCACAG
rJMSF022L17+ TAACTTCACAGGATGAAGATGTAGAAGAAGAAGANGAAGCTAGGCAGAATGAGACCACAG
rJMSF023L17+ TAACTTCACAGGATGAAGATGTAGAAGAAGAAGAAGAAGCTAGGCAGAATGAGACCACAG
____________________________________________________________
consensus TAACTTCACAGGATGAAGATGTAGAAGAAGAAGAAGAAGCTAGGCAGAATGAGACCACAG
. : . : . : . : . : . :
JMSF022L17- CAAAGGAAAGGCTAACAAGATTAGATCTTGCAGCCTGCAAAAGCCAGTCTCATACATCTT
JMSF023L17- CAAAGGAAAGGCTAACAAGATTAGATCTTGCAGCCTGCAAAAGCCAGTCTCATACATCTT
JMSF035H06- CAAAGGAAAGGCTAACAAGATTAGATCTTGCAGCCTGCAAAAGCCAGTCTCATACATCTT
rJMSF022L17+ CAAAGGAAAGGCTAACAAGATTAGATCTTGCAGCCTGCAAAAGCCAGTCTCATACATCTT
rJMSF023L17+ CAAAGGAAAGGCTAACAAGATTAGATCTTGCAGCCTGCAAAAGCCAGTCTCATACATCTT
rJMSF035H06+ AAAAGCCAGTCTCATACATCTT
____________________________________________________________
consensus CAAAGGAAAGGCTAACAAGATTAGATCTTGCAGCCTGCAAAAGCCAGTCTCATACATCTT
. : . : . : . : . : . :
JMSF022L17- CACCCTCTCTTGATAGAAGCTGCAAGAGCTTAGGGGAGCTCGAGCTCGAAGAAGTAAAGG
JMSF023L17- CACCCTCTCTTGATAGAAGCTGCAAGAGCTTAGGGGAGCTCGAGCTCGAAGAAGTAAAGG
JMSF035H06- CACCCTCTCTTGATAGAAGCTGCAAGAGCTTAGGGGAGCTCGAGCTCGAAGAAGTAAAGG
rJMSF022L17+ CACCCTCTCTTGATAGAAGCTGCAAGAGCTTAGGGGAGCTCGAGCTCGAAGAAGTAAAGG
rJMSF023L17+ CACCCTCTCTTGATAGAAGCTGCAAGAGCTTAGGGGAGCTCGAGCTCGAAGAAGTAAAGG
rJMSF035H06+ CACCCTCTCTTGATAGAAGCTGCAAGAGCTTAGGGGAGCTCGAGCTCGAAGAAGTAAAGG
____________________________________________________________
consensus CACCCTCTCTTGATAGAAGCTGCAAGAGCTTAGGGGAGCTCGAGCTCGAAGAAGTAAAGG
. : . : . : . : . : . :
JMSF022L17- GGTTCATGGATTTAGGTTTCATATTCGACAAAGAACGGACAAGCAAGAAGACGATGAGCG
JMSF023L17- GGTTCATGGATTTAGGTTTCATATTCGACAAAGAACGGACAAGCAAGAAGACGATGAGCG
JMSF035H06- GGTTCATGGATTTAGGTTTCATATTCGGCAAAGAACGGACAAGCAAGAAGACGATGAGCG
rJMSF022L17+ GGTTCATGGATTTAGGTTTCATATTCGACAAAGAACGGACAAGCAAGAAGACGATGAGCG
rJMSF023L17+ GGTTCATGGATTTAGGTTTCATATTCGACAAAGAACGGACAAGCAAGAAGACGATGAGCG
rJMSF035H06+ GGTTCATGGATTTAGGTTTCATATTCGGCAAAGAACGGACAAGCAAGAAGACGATGAGCG
____________________________________________________________
consensus GGTTCATGGATTTAGGTTTCATATTCGACAAAGAACGGACAAGCAAGAAGACGATGAGCG
. : . : . : . : . : . :
JMSF022L17- TCGTTCCTGGCCTGCAAAGACTTCAACTGATCAAAGCTAAACCAGAAAGAGTGTTAAAGA
JMSF023L17- TCGTTCCTGGCCTGCAAAGACTTCAACTGATCAAAGCTAAACCAGAAAGAGTGTTAAAGA
JMSF035H06- TCGTTCCTGGCCTGCAAAGACTTCAACTGATCAAAGCTAAACCAGAAAGAGTGTTAAAGA
rJMSF022L17+ TCGTTCCTGGCCTGCAAAGACTTCAACTGATCAAAGCTAAACCAGAAAGAGTGTTAAAGA
rJMSF023L17+ TCGTTCCTGGCCTGCAAAGACTTCAACTGATCAAAGCTAAACCAGAAAGAGTGTTAAAGA
rJMSF035H06+ TCGTTCCTGGCCTGCAAAGACTTCAACTGATCAAAGCTAAACCAGAAAGAGTGTTAAAGA
____________________________________________________________
consensus TCGTTCCTGGCCTGCAAAGACTTCAACTGATCAAAGCTAAACCAGAAAGAGTGTTAAAGA
. : . : . : . : . : . :
JMSF022L17- GTTGGAATTCTCAAAGAGAACACGAAGACGAAGATGACATGGAAAGAGGCAGAGTGAGGC
JMSF023L17- GTTGGAATTCTCAAAGAGAACACGAAGACGAAGATGACATGGAAAGAGGCAGAGTGAGGC
JMSF035H06- GTTGGAATTCTCAAAGAGAACACGAAGACGAAGATGACATGGAAAGAGGCAGAGTGAGGC
rJMSF022L17+ GTTGGAATTCTCAAAGAGAACACGAAGACGAAGATGACATGGAAAGAGGCAGAGTGAGGC
rJMSF023L17+ GTTGGAATTCTCAAAGAGAACACGAAGACGAAGATGACATGGAAAGAGGCAGAGTGAGGC
rJMSF035H06+ GTTGGAATTCTCAAAGAGAACACGAAGACGAAGATGACATGGAAAGAGGCAGAGTGAGGC
____________________________________________________________
consensus GTTGGAATTCTCAAAGAGAACACGAAGACGAAGATGACATGGAAAGAGGCAGAGTGAGGC
. : . : . : . : . : . :
JMSF022L17- CTTACCTATCAGAGGCATGGCTCATAAAGAGTCCCAATTCACCATTGCTAAATCTAAGGA
JMSF023L17- CTTACCTATCAGAGGCATGGCTCATAAAGAGTCCCAATTCACCATTGCTAAATCTAAGGA
JMSF035H06- CTTACCTATCAGAGGCATGGCTCATAAAGAGTCCCAATTCACCATTGCTAAATCTAAGGA
rJMSF022L17+ CTTACCTATCAGAGGCATGGCTCATAAAGAGTCCCAATTCACCATTGCTAAATCTAAGGA
rJMSF023L17+ CTTACCTATCAGAGGCATGGCTCATAAAGAGTCCCAATTCACCATTGCTAAATCTAAGGA
rJMSF035H06+ CTTACCTATCAGAGGCATGGCTCATAAAGAGTCCCAATTCACCATTGCTAAATCTAAGGA
____________________________________________________________
consensus CTTACCTATCAGAGGCATGGCTCATAAAGAGTCCCAATTCACCATTGCTAAATCTAAGGA
. : . : . : . : . : . :
JMSF022L17- TGCCAAGGGCCTCTGCAGCTGCTGATGTTAAGAGGCATCTTAG
JMSF023L17- TGCCAAGGGCCTCTGCAGCTGCTGATGTTAAGAGGCATCTTAGACATTGGGCCAAAACAG
JMSF035H06- TGCCAAGGGCCTCTGCAGCTGCTGATGTTAAGAGGCATCTTAGACATTGGGCCAAAACAG
rJMSF022L17+ TGCCAAGGGCCTCTGCAGCTGCTGATGTTAAGAGGCATCTTAGACATTGGGCCAAAACAG
rJMSF023L17+ TGCCAAGGGCCTCTGCAGCTGCTGATGTTAAGAGGCATCTTAGACATTGGGCCAAAACAG
rJMSF035H06+ TGCCAAGGGCCTCTGCAGCTGCTGATGTTAAGAGGCATCTTAGACATTGGGCCAAAACAG
____________________________________________________________
consensus TGCCAAGGGCCTCTGCAGCTGCTGATGTTAAGAGGCATCTTAGACATTGGGCCAAAACAG
. : . : . : . : . : . :
JMSF023L17- TTGCAACTGTGATT
JMSF035H06- TTGCAACTGTGATTCGTCAAGAATCTTGACAGTGCCATGAGAG
rJMSF022L17+ TTGCAACTGTGATTCGTCAAGAATCTTGACAGTGCCATGAGAGATCCTATGGAATTTTCA
rJMSF023L17+ TTGCAACTGTGATTCGTCAAGAATCTTGACAGTGCCATGAGAGATCCTATGGAATTTTCA
rJMSF035H06+ TTGCAACTGTGATTCGTCAAGAATCTTGACAGTGCCATGAGAGATCCTATGGAATTTTCA
____________________________________________________________
consensus TTGCAACTGTGATTCGTCAAGAATCTTGACAGTGCCATGAGAGATCCTATGGAATTTTCA
. : . : . : . : . : . :
rJMSF022L17+ TCTGAGAGGCCACAAATAGTAGCCAGCAAAATAATGCACCACGTCACTGCTGACATAGCA
rJMSF023L17+ TCTGAGAGGCCACAAATAGTAGCCAGCAAAATAATGCACCACGTCACTGCTGACATAGCA
rJMSF035H06+ TCTGAGAGGCCACAAATAGTAGCCAGCAAAATAATGCACCACGTCACTGCTGACATAGCA
____________________________________________________________
consensus TCTGAGAGGCCACAAATAGTAGCCAGCAAAATAATGCACCACGTCACTGCTGACATAGCA
. : . : . : . : . : . :
rJMSF022L17+ GTGTACCATATACCCTGCCTAGCATACTTTTTGTTCTCCCAGGTTATATATCAACCTCAA
rJMSF023L17+ GTGTACCATATACCCTGCCTAGCATACTTTTTGTTCTCCCAGGTTATATATCAACCTCAA
rJMSF035H06+ GTGTACCATATACCCTGCCTAGCATACTTTTTGTTCTCCCAGGTTATATATCAACCTCAA
____________________________________________________________
consensus GTGTACCATATACCCTGCCTAGCATACTTTTTGTTCTCCCAGGTTATATATCAACCTCAA
. : . : . : . : . : . :
rJMSF022L17+ CCTCTCTCAACTAGGTCAACTTCTCCCAGATCTCCACCCACAACTGCAAATACTGAG
rJMSF023L17+ CCTCTCTCAACTAGGTCAACTTCTCCCAGATCTCCACCCACAACTGCAAATACTGAG
rJMSF035H06+ CCTCTCTCAACTAGGTCAACTTCTCCCAGATCTCCACCCACAACTGCAAATACTGAGTTG
____________________________________________________________
consensus CCTCTCTCAACTAGGTCAACTTCTCCCAGATCTCCACCCACAACTGCAAATACTGAGTTG
. : . : . : . : . : . :
rJMSF035H06+ TATATAGTTTGGTTTCGTGTAAAATTAAGAAGACTTACCTGGTTCGTTTTGTTATTTAGT
____________________________________________________________
consensus TATATAGTTTGGTTTCGTGTAAAATTAAGAAGACTTACCTGGTTCGTTTTGTTATTTAGT
. : . : . : . : . : . :
rJMSF035H06+ TTTACCCGGTTTTGCACTTGTTGCTTCAGATGCCACTTGTACATGTGGGTGTCNAAAAAG
____________________________________________________________
consensus TTTACCCGGTTTTGCACTTGTTGCTTCAGATGCCACTTGTACATGTGGGTGTCNAAAAAG