Contig 012680:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022L17Sequence616012680 (6)ref|XP_002519556.1|7e-42conserved hypothetical protein [Ricinus communis] gb|EEF42970.1| conserved hypot763012680 (6)ref|XP_002519556.1|3e-49conserved hypothetical protein [Ricinus communis] gb|EEF42970.1| conserved hypot
JMSF023L17Sequence647012680 (6)ref|XP_009601138.1|6e-49PREDICTED: uncharacterized protein LOC104096470 isoform X1 [Nicotiana tomentosi762012680 (6)ref|XP_002519556.1|6e-49conserved hypothetical protein [Ricinus communis] gb|EEF42970.1| conserved hypot
JMSF035H06Sequence673012680 (6)ref|XP_009601138.1|8e-50PREDICTED: uncharacterized protein LOC104096470 isoform X1 [Nicotiana tomentosi742012680 (6)ref|XP_002519556.1|3e-43conserved hypothetical protein [Ricinus communis] gb|EEF42970.1| conserved hypot

Alignment

This contig is upended


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JMSF022L17-                                         TGTTAGGTGTCATGGACTGTCTCTGGTTTT
JMSF023L17-                                      GGTTGTTAGGTGTCATGGACTGTCTCTGGTTTT
JMSF035H06-                                         TGTTAGGTGTCATGGACTGTCTCTGGTTTT
                      ____________________________________________________________
consensus                                        GGTTGTTAGGTGTCATGGACTGTCTCTGGTTTT
 
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JMSF022L17-           ACCAGTCTATATTCTTTACAGAAACCCCTACAGTACTATGTCCAAAACCCCTTGAATCAC
JMSF023L17-           ACCAGTCTATATTCTTTACAGAAACCCCTACAGTACTATGTCCAAAACCCCTTGAATCAC
JMSF035H06-           ACCAGTCTATATTCTTTACAGAAACCCCTACAGTACTATGTCCAAAACCCCTTGAATCAC
                      ____________________________________________________________
consensus             ACCAGTCTATATTCTTTACAGAAACCCCTACAGTACTATGTCCAAAACCCCTTGAATCAC
 
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JMSF022L17-           TTCAATATTCTCGAACCTCATCAATGGCAGGAAACGATTCATCTTCAACAGTTGATGAGA
JMSF023L17-           TTCAATATTCTCGAACCTCATCAATGGCAGGAAACGATTCATCTTCAACAGTTGATGAGA
JMSF035H06-           TTCAATATTCTCGAACCTCATCAATGGCAGGAAACGATTCATCTTCAACAGTTGATGAGA
rJMSF022L17+                        ACCTCATCAATGGCAGGAAACGATTCATCTTCAACAGTTGATGAGA
rJMSF023L17+                           TCATCAATNGCAGGAAACGATTCATCTTCAACAGNTGATGAGA
                      ____________________________________________________________
consensus             TTCAATATTCTCGAACCTCATCAATGGCAGGAAACGATTCATCTTCAACAGTTGATGAGA
 
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JMSF022L17-           TAACTTCACAGGATGAAGATGTAGAAGAAGAAGAAGAAGCTAGGCAGAATGAGACCACAG
JMSF023L17-           TAACTTCACAGGATGAAGATGTAGAAGAAGAAGAAGAAGCTAGGCAGAATGAGACCACAG
JMSF035H06-           TAACTTCACAGGATGAAGATGTAGAAGAAGAAGAAGAAGCTAGGCAGAATGAGACCACAG
rJMSF022L17+          TAACTTCACAGGATGAAGATGTAGAAGAAGAAGANGAAGCTAGGCAGAATGAGACCACAG
rJMSF023L17+          TAACTTCACAGGATGAAGATGTAGAAGAAGAAGAAGAAGCTAGGCAGAATGAGACCACAG
                      ____________________________________________________________
consensus             TAACTTCACAGGATGAAGATGTAGAAGAAGAAGAAGAAGCTAGGCAGAATGAGACCACAG
 
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JMSF022L17-           CAAAGGAAAGGCTAACAAGATTAGATCTTGCAGCCTGCAAAAGCCAGTCTCATACATCTT
JMSF023L17-           CAAAGGAAAGGCTAACAAGATTAGATCTTGCAGCCTGCAAAAGCCAGTCTCATACATCTT
JMSF035H06-           CAAAGGAAAGGCTAACAAGATTAGATCTTGCAGCCTGCAAAAGCCAGTCTCATACATCTT
rJMSF022L17+          CAAAGGAAAGGCTAACAAGATTAGATCTTGCAGCCTGCAAAAGCCAGTCTCATACATCTT
rJMSF023L17+          CAAAGGAAAGGCTAACAAGATTAGATCTTGCAGCCTGCAAAAGCCAGTCTCATACATCTT
rJMSF035H06+                                                AAAAGCCAGTCTCATACATCTT
                      ____________________________________________________________
consensus             CAAAGGAAAGGCTAACAAGATTAGATCTTGCAGCCTGCAAAAGCCAGTCTCATACATCTT
 
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JMSF022L17-           CACCCTCTCTTGATAGAAGCTGCAAGAGCTTAGGGGAGCTCGAGCTCGAAGAAGTAAAGG
JMSF023L17-           CACCCTCTCTTGATAGAAGCTGCAAGAGCTTAGGGGAGCTCGAGCTCGAAGAAGTAAAGG
JMSF035H06-           CACCCTCTCTTGATAGAAGCTGCAAGAGCTTAGGGGAGCTCGAGCTCGAAGAAGTAAAGG
rJMSF022L17+          CACCCTCTCTTGATAGAAGCTGCAAGAGCTTAGGGGAGCTCGAGCTCGAAGAAGTAAAGG
rJMSF023L17+          CACCCTCTCTTGATAGAAGCTGCAAGAGCTTAGGGGAGCTCGAGCTCGAAGAAGTAAAGG
rJMSF035H06+          CACCCTCTCTTGATAGAAGCTGCAAGAGCTTAGGGGAGCTCGAGCTCGAAGAAGTAAAGG
                      ____________________________________________________________
consensus             CACCCTCTCTTGATAGAAGCTGCAAGAGCTTAGGGGAGCTCGAGCTCGAAGAAGTAAAGG
 
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JMSF022L17-           GGTTCATGGATTTAGGTTTCATATTCGACAAAGAACGGACAAGCAAGAAGACGATGAGCG
JMSF023L17-           GGTTCATGGATTTAGGTTTCATATTCGACAAAGAACGGACAAGCAAGAAGACGATGAGCG
JMSF035H06-           GGTTCATGGATTTAGGTTTCATATTCGGCAAAGAACGGACAAGCAAGAAGACGATGAGCG
rJMSF022L17+          GGTTCATGGATTTAGGTTTCATATTCGACAAAGAACGGACAAGCAAGAAGACGATGAGCG
rJMSF023L17+          GGTTCATGGATTTAGGTTTCATATTCGACAAAGAACGGACAAGCAAGAAGACGATGAGCG
rJMSF035H06+          GGTTCATGGATTTAGGTTTCATATTCGGCAAAGAACGGACAAGCAAGAAGACGATGAGCG
                      ____________________________________________________________
consensus             GGTTCATGGATTTAGGTTTCATATTCGACAAAGAACGGACAAGCAAGAAGACGATGAGCG
 
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JMSF022L17-           TCGTTCCTGGCCTGCAAAGACTTCAACTGATCAAAGCTAAACCAGAAAGAGTGTTAAAGA
JMSF023L17-           TCGTTCCTGGCCTGCAAAGACTTCAACTGATCAAAGCTAAACCAGAAAGAGTGTTAAAGA
JMSF035H06-           TCGTTCCTGGCCTGCAAAGACTTCAACTGATCAAAGCTAAACCAGAAAGAGTGTTAAAGA
rJMSF022L17+          TCGTTCCTGGCCTGCAAAGACTTCAACTGATCAAAGCTAAACCAGAAAGAGTGTTAAAGA
rJMSF023L17+          TCGTTCCTGGCCTGCAAAGACTTCAACTGATCAAAGCTAAACCAGAAAGAGTGTTAAAGA
rJMSF035H06+          TCGTTCCTGGCCTGCAAAGACTTCAACTGATCAAAGCTAAACCAGAAAGAGTGTTAAAGA
                      ____________________________________________________________
consensus             TCGTTCCTGGCCTGCAAAGACTTCAACTGATCAAAGCTAAACCAGAAAGAGTGTTAAAGA
 
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JMSF022L17-           GTTGGAATTCTCAAAGAGAACACGAAGACGAAGATGACATGGAAAGAGGCAGAGTGAGGC
JMSF023L17-           GTTGGAATTCTCAAAGAGAACACGAAGACGAAGATGACATGGAAAGAGGCAGAGTGAGGC
JMSF035H06-           GTTGGAATTCTCAAAGAGAACACGAAGACGAAGATGACATGGAAAGAGGCAGAGTGAGGC
rJMSF022L17+          GTTGGAATTCTCAAAGAGAACACGAAGACGAAGATGACATGGAAAGAGGCAGAGTGAGGC
rJMSF023L17+          GTTGGAATTCTCAAAGAGAACACGAAGACGAAGATGACATGGAAAGAGGCAGAGTGAGGC
rJMSF035H06+          GTTGGAATTCTCAAAGAGAACACGAAGACGAAGATGACATGGAAAGAGGCAGAGTGAGGC
                      ____________________________________________________________
consensus             GTTGGAATTCTCAAAGAGAACACGAAGACGAAGATGACATGGAAAGAGGCAGAGTGAGGC
 
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JMSF022L17-           CTTACCTATCAGAGGCATGGCTCATAAAGAGTCCCAATTCACCATTGCTAAATCTAAGGA
JMSF023L17-           CTTACCTATCAGAGGCATGGCTCATAAAGAGTCCCAATTCACCATTGCTAAATCTAAGGA
JMSF035H06-           CTTACCTATCAGAGGCATGGCTCATAAAGAGTCCCAATTCACCATTGCTAAATCTAAGGA
rJMSF022L17+          CTTACCTATCAGAGGCATGGCTCATAAAGAGTCCCAATTCACCATTGCTAAATCTAAGGA
rJMSF023L17+          CTTACCTATCAGAGGCATGGCTCATAAAGAGTCCCAATTCACCATTGCTAAATCTAAGGA
rJMSF035H06+          CTTACCTATCAGAGGCATGGCTCATAAAGAGTCCCAATTCACCATTGCTAAATCTAAGGA
                      ____________________________________________________________
consensus             CTTACCTATCAGAGGCATGGCTCATAAAGAGTCCCAATTCACCATTGCTAAATCTAAGGA
 
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JMSF022L17-           TGCCAAGGGCCTCTGCAGCTGCTGATGTTAAGAGGCATCTTAG                 
JMSF023L17-           TGCCAAGGGCCTCTGCAGCTGCTGATGTTAAGAGGCATCTTAGACATTGGGCCAAAACAG
JMSF035H06-           TGCCAAGGGCCTCTGCAGCTGCTGATGTTAAGAGGCATCTTAGACATTGGGCCAAAACAG
rJMSF022L17+          TGCCAAGGGCCTCTGCAGCTGCTGATGTTAAGAGGCATCTTAGACATTGGGCCAAAACAG
rJMSF023L17+          TGCCAAGGGCCTCTGCAGCTGCTGATGTTAAGAGGCATCTTAGACATTGGGCCAAAACAG
rJMSF035H06+          TGCCAAGGGCCTCTGCAGCTGCTGATGTTAAGAGGCATCTTAGACATTGGGCCAAAACAG
                      ____________________________________________________________
consensus             TGCCAAGGGCCTCTGCAGCTGCTGATGTTAAGAGGCATCTTAGACATTGGGCCAAAACAG
 
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JMSF023L17-           TTGCAACTGTGATT                                              
JMSF035H06-           TTGCAACTGTGATTCGTCAAGAATCTTGACAGTGCCATGAGAG                 
rJMSF022L17+          TTGCAACTGTGATTCGTCAAGAATCTTGACAGTGCCATGAGAGATCCTATGGAATTTTCA
rJMSF023L17+          TTGCAACTGTGATTCGTCAAGAATCTTGACAGTGCCATGAGAGATCCTATGGAATTTTCA
rJMSF035H06+          TTGCAACTGTGATTCGTCAAGAATCTTGACAGTGCCATGAGAGATCCTATGGAATTTTCA
                      ____________________________________________________________
consensus             TTGCAACTGTGATTCGTCAAGAATCTTGACAGTGCCATGAGAGATCCTATGGAATTTTCA
 
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rJMSF022L17+          TCTGAGAGGCCACAAATAGTAGCCAGCAAAATAATGCACCACGTCACTGCTGACATAGCA
rJMSF023L17+          TCTGAGAGGCCACAAATAGTAGCCAGCAAAATAATGCACCACGTCACTGCTGACATAGCA
rJMSF035H06+          TCTGAGAGGCCACAAATAGTAGCCAGCAAAATAATGCACCACGTCACTGCTGACATAGCA
                      ____________________________________________________________
consensus             TCTGAGAGGCCACAAATAGTAGCCAGCAAAATAATGCACCACGTCACTGCTGACATAGCA
 
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rJMSF022L17+          GTGTACCATATACCCTGCCTAGCATACTTTTTGTTCTCCCAGGTTATATATCAACCTCAA
rJMSF023L17+          GTGTACCATATACCCTGCCTAGCATACTTTTTGTTCTCCCAGGTTATATATCAACCTCAA
rJMSF035H06+          GTGTACCATATACCCTGCCTAGCATACTTTTTGTTCTCCCAGGTTATATATCAACCTCAA
                      ____________________________________________________________
consensus             GTGTACCATATACCCTGCCTAGCATACTTTTTGTTCTCCCAGGTTATATATCAACCTCAA
 
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rJMSF022L17+          CCTCTCTCAACTAGGTCAACTTCTCCCAGATCTCCACCCACAACTGCAAATACTGAG   
rJMSF023L17+          CCTCTCTCAACTAGGTCAACTTCTCCCAGATCTCCACCCACAACTGCAAATACTGAG   
rJMSF035H06+          CCTCTCTCAACTAGGTCAACTTCTCCCAGATCTCCACCCACAACTGCAAATACTGAGTTG
                      ____________________________________________________________
consensus             CCTCTCTCAACTAGGTCAACTTCTCCCAGATCTCCACCCACAACTGCAAATACTGAGTTG
 
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rJMSF035H06+          TATATAGTTTGGTTTCGTGTAAAATTAAGAAGACTTACCTGGTTCGTTTTGTTATTTAGT
                      ____________________________________________________________
consensus             TATATAGTTTGGTTTCGTGTAAAATTAAGAAGACTTACCTGGTTCGTTTTGTTATTTAGT
 
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rJMSF035H06+          TTTACCCGGTTTTGCACTTGTTGCTTCAGATGCCACTTGTACATGTGGGTGTCNAAAAAG
                      ____________________________________________________________
consensus             TTTACCCGGTTTTGCACTTGTTGCTTCAGATGCCACTTGTACATGTGGGTGTCNAAAAAG