Contig 012676:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF034E07Sequence653009443 (7)gb|AHM22941.1|3e-633-hydroxy-3-methylglutaryl coenzyme A synthase [Nicotiana tabacum]574012676 (2)ref|XP_009800463.1|1e-68PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Nicotiana sylvestris]
JMSF035M07Sequence648009443 (7)gb|AHM22941.1|1e-853-hydroxy-3-methylglutaryl coenzyme A synthase [Nicotiana tabacum]779012676 (2)ref|XP_009800463.1|3e-91PREDICTED: hydroxymethylglutaryl-CoA synthase-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF035M07+ ATA
                      ____________________________________________________________
consensus ATA
 
. : . : . : . : . : . :
rJMSF035M07+ TTCAATGATGNTGTGAGGAATGCCAGCTACATTGATGAAGGAGCCAAGGAAAAGTGGGCA
                      ____________________________________________________________
consensus TTCAATGATGNTGTGAGGAATGCCAGCTACATTGATGAAGGAGCCAAGGAAAAGTGGGCA
 
. : . : . : . : . : . :
rJMSF035M07+ CCATTTTCATCTTTAAGTGGTGATGAAAGTTACTCAAACCGTGATCTGAAAAGGCATCAC
                      ____________________________________________________________
consensus CCATTTTCATCTTTAAGTGGTGATGAAAGTTACTCAAACCGTGATCTGAAAAGGCATCAC
 
. : . : . : . : . : . :
rJMSF035M07+ AGCAAGTTGCAAAACCACTCTATGATGCAAAGGTGCAGCCAGCAACATTAGTACCCAAAC
                      ____________________________________________________________
consensus AGCAAGTTGCAAAACCACTCTATGATGCAAAGGTGCAGCCAGCAACATTAGTACCCAAAC
 
. : . : . : . : . : . :
rJMSF035M07+ AAATTGGAAACATGTACACAGCATCTCTCTATGCAGCTTTCATCTCGCTTCTCCACAACA
rJMSF034E07+ TCTCTATGCAGCTTTCATCTCGCTTCTCCACAACA
                      ____________________________________________________________
consensus AAATTGGAAACATGTACACAGCATCTCTCTATGCAGCTTTCATCTCGCTTCTCCACAACA
 
. : . : . : . : . : . :
rJMSF035M07+ AGCATGACACTTTGCCTGGGCAACGGGTGATACTGTTCTCATATGGCAGTGGATTGACAG
rJMSF034E07+ AGCATGACACTTTGCCTGGGCAACGGGTGATACTGTTCTCATATGGCAGTGGATTGACAG
                      ____________________________________________________________
consensus AGCATGACACTTTGCCTGGGCAACGGGTGATACTGTTCTCATATGGCAGTGGATTGACAG
 
. : . : . : . : . : . :
rJMSF035M07+ CCACAATGTTTTCCCTCCGCCTTCGGGAGGGTCAGCATCCATTCAGCTTGTCAAACATTG
rJMSF034E07+ CCACAATGTTTTCCCTCCGCCTTCGGGAGGGTCAGCATCCATTCAGCTTGTCAAACATTG
                      ____________________________________________________________
consensus CCACAATGTTTTCCCTCCGCCTTCGGGAGGGTCAGCATCCATTCAGCTTGTCAAACATTG
 
. : . : . : . : . : . :
rJMSF035M07+ CAGCCGTCTTGAACGTTGCAGGCAAGTTGAAGGCAAGGCACGAGTTAACTCCTGAAAAAT
rJMSF034E07+ CAGCCGTCTTGAACGTTGCAGGCAAGTTGAAGGCAAGGCACGAGTTAACTCCTGAAAAAT
                      ____________________________________________________________
consensus CAGCCGTCTTGAACGTTGCAGGCAAGTTGAAGGCAAGGCACGAGTTAACTCCTGAAAAAT
 
. : . : . : . : . : . :
rJMSF035M07+ TCATCGAATTAATGAAAGTAATGGAGCACAGGTACGGTGCAAAGGACTTTGTGACAAGCA
rJMSF034E07+ TCATCGAATTAATGAAAGTAATGGAGCACAGGTACGGTGCAAAGGACTTTGTGACAAGCA
                      ____________________________________________________________
consensus TCATCGAATTAATGAAAGTAATGGAGCACAGGTACGGTGCAAAGGACTTTGTGACAAGCA
 
. : . : . : . : . : . :
rJMSF035M07+ AGGATTGCAGCCTCCTAGCTCCGGGAACCTATTATCTCACTGAGGTCGATTCCAAGTACC
rJMSF034E07+ AGGATTGCAGCCTCCTAGCTCCGGGAACCTATTATCTCACTGAGGTCGATTCCAAGTACC
                      ____________________________________________________________
consensus AGGATTGCAGCCTCCTAGCTCCGGGAACCTATTATCTCACTGAGGTCGATTCCAAGTACC
 
. : . : . : . : . : . :
rJMSF035M07+ GGAGATTCTACGCGCAAAAAGCAAAGGATGCAGCCACCACCGCTTTGGCCAACGGCCACT
rJMSF034E07+ GGAGATTCTACGCGCAAAAAGCAAAGGATGCAGCCACCACCGCTTTGGCCAACGGCCACT
                      ____________________________________________________________
consensus GGAGATTCTACGCGCAAAAAGCAAAGGATGCAGCCACCACCGCTTTGGCCAACGGCCACT
 
. : . : . : . : . : . :
rJMSF035M07+ GAGGTGTTGGTAGATGCAGGTTGTTGTAAGGCCATGAAGTTGGCTTGTGGTCTCTTAGTT
rJMSF034E07+ GAGGTGTTGGTAGATGCAGGTTGTTGTAAGGCCATGAAGTTGGCTTGTGGTCTCTTAGTT
                      ____________________________________________________________
consensus GAGGTGTTGGTAGATGCAGGTTGTTGTAAGGCCATGAAGTTGGCTTGTGGTCTCTTAGTT
 
. : . : . : . : . : . :
rJMSF035M07+ TGTCAGCAAATAGGAGAAATAACCATTGTGGTGTGAGTTTATTTGGCAGATCAGTTTTAT
rJMSF034E07+ TGTCAGCAAATAGGAGAAATAACCATTGTGGTGTGAGTTTATTTGGCAGATCAGTTTTAT
                      ____________________________________________________________
consensus TGTCAGCAAATAGGAGAAATAACCATTGTGGTGTGAGTTTATTTGGCAGATCAGTTTTAT
 
. : . : . : . : . : . :
rJMSF035M07+ TTCGACAACCATTCGTGTACTATGTTTGAAAAGTTC
rJMSF034E07+ TTCGACAA-CATTCGTGTACTATGTTTGAAAAGTTCATTGTAGATGATTCAGACTTCATC
                      ____________________________________________________________
consensus TTCGACAACCATTCGTGTACTATGTTTGAAAAGTTCATTGTAGATGATTCAGACTTCATC