Contig 012652:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN039K20Sequence649012652 (4)
JMFN044L06Sequence631012652 (4)
JMSF019E18Sequence492010732 (3)ref|XP_011097650.1|2e-15PREDICTED: serine/arginine-rich splicing factor SR45-like [Sesamum indicum]731012652 (4)
JMSF028I12Sequence679010732 (3)ref|XP_011097650.1|3e-45PREDICTED: serine/arginine-rich splicing factor SR45-like [Sesamum indicum]751012652 (4)

Alignment

This contig is upended


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JMFN044L06-                 GCCGAAAACCTCTCTCTCCGCATCGAAGGAGATCTCCAATTGGACGAAGAGGAT
rJMSF019E18+                                       CGAAGGAGATCTCCAATTGGACGAAGAGGAT
rJMSF028I12+                                       CGAAGGAGATCTCCAATTGGACGAAGAGGAT
                      ____________________________________________________________
consensus                   GCCGAAAACCTCTCTCTCCGCATCGAAGGAGATCTCCAATTGGACGAAGAGGAT
 
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JMFN044L06-           CTCCTAGACGAGAACCCGACTCTCCTCCCCGTCGGTCTCCTGTTCGTCGTCGAGATTCTC
JMFN039K20-                                                       CGTCGTCGAGATTCTC
rJMSF019E18+          CTCCTAGACGAGAACCCGACTCTCCTCCCCGTCGGTCTCCTGTTCGTCGTCGAGATTCTC
rJMSF028I12+          CTCCTAGACGAGAACCCGACTCTCCTCCCCGTCGGTCTCCTGTTCGTCGTCGAGATTCTC
                      ____________________________________________________________
consensus             CTCCTAGACGAGAACCCGACTCTCCTCCCCGTCGGTCTCCTGTTCGTCGTCGAGATTCTC
 
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JMFN044L06-           CTTATAGACGTGCTGACTCTCCACCTACAAGACGGAGGCTTACACCTCCACCAAGAGGAG
JMFN039K20-           CTTATAGACGTGCTGACTCTCCACCTACAAGACGGAGGCTTACACCTCCACCAAGAGGAG
rJMSF019E18+          CTTATAGACGTGCTGACTCTCCACCTACAAGACGGAGGCTTACACCTCCACCAAGAGGAG
rJMSF028I12+          CTTATAGACGTGCTGACTCTCCACCTACAAGACGGAGGCTTACACCTCCACCAAGAGGAG
                      ____________________________________________________________
consensus             CTTATAGACGTGCTGACTCTCCACCTACAAGACGGAGGCTTACACCTCCACCAAGAGGAG
 
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JMFN044L06-           GGCGTTCACCCTCTCCACCAAGGCGTTACCGGTCACCACCTAGGGGGTCTCCTAGAAGAA
JMFN039K20-           GGCGTTCACCCTCTCCACCAAGGCGTTACCGGTCACCACCTAGGGGGTCTCCTAGAAGAA
rJMSF019E18+          GGCGTTCACCCTCTCCACCAAGGCGTTACCGGTCACCACCTAGGGGGTCTCCTAGAAGAA
rJMSF028I12+          GGCGTTCACCCTCTCCACCAAGGCGTTACCGGTCACCACCTAGGGGGTCTCCTAGAAGAA
                      ____________________________________________________________
consensus             GGCGTTCACCCTCTCCACCAAGGCGTTACCGGTCACCACCTAGGGGGTCTCCTAGAAGAA
 
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JMFN044L06-           TCCGTGGAAGTCCTCTTCGAAGACGTTCTCCCCCTCCTCCTCCAAGAAGACGTTCACCCC
JMFN039K20-           TCCGTGGAAGTCCTCTTCGAAGACGTTCTCCCCCTCCTCCTCCAAGAAGACGTTCACCCC
rJMSF019E18+          TCCGTGGAAGTCCTCTTCGAAGACGTTCTCCCCCTCCTCCTCCAAGAAGACGTTCACCCC
rJMSF028I12+          TCCGTGGAAGTCCTCTTCGAAGACGTTCTCCCCCTCCTCCTCCAAGAAGACGTTCACCCC
                      ____________________________________________________________
consensus             TCCGTGGAAGTCCTCTTCGAAGACGTTCTCCCCCTCCTCCTCCAAGAAGACGTTCACCCC
 
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JMFN044L06-           GGCGAGCACGTAGTCCTCCCAGACGGTCTCCCATCGGTCGCAGACGTAGCCGCTCTCCTA
JMFN039K20-           GGCGAGCACGTATTCCTCCCAGACGGTCTCCCATCGGTCGCAGACGTAGCCGCTCTCCTA
rJMSF019E18+          GGCGAGCACGTAGTCCTCCCAGACGGTCTCCCATCGGTCGCAGACGTAGCCGCTCTCCTA
rJMSF028I12+          GGCGAGCACGTAGTCCTCCCAGACGGTCTCCCATCGGTCGCAGACGTAGCCGCTCTCCTA
                      ____________________________________________________________
consensus             GGCGAGCACGTAGTCCTCCCAGACGGTCTCCCATCGGTCGCAGACGTAGCCGCTCTCCTA
 
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JMFN044L06-           TAAGGAGGCCTGTACGATCACGTTCGAGATCTATTTCTCCTAGGAGAGCAAGAGGAGGAC
JMFN039K20-           TAAGGAGGCCTGTACGATCACGTTCGAGATCTATTTCTCCTAGGAGAGCAAGAGGAGGAC
rJMSF019E18+          TAAGGAGGCCTGTACGATCACGTTCGAGATCTATTTCTCCTAGGAGAGCAAGAGGAGGAC
rJMSF028I12+          TAAGGAGGCCTGTACGATCACGTTCGAGATCTATTTCTCCTAGGAGAGCAAGAGGAGGAC
                      ____________________________________________________________
consensus             TAAGGAGGCCTGTACGATCACGTTCGAGATCTATTTCTCCTAGGAGAGCAAGAGGAGGAC
 
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JMFN044L06-           CACCTTCTAGACGCGGGAGGTCATCATCTTACTCCTCATCACCCAGTGCTAGGAAGGGAC
JMFN039K20-           CACCTTCTAGACGCGGGAGGTCATCATCTTACTCCTCATCACCCAGTGCTAGGAAGGGAC
rJMSF019E18+          CACCTTCTAGACGCGGGAGGTCATCATCTTACTCCTCATCACCCAGTGCTAGGAAGGGAC
rJMSF028I12+          CACCTTCTAGACGCGGGAGGTCATCATCTTACTCCTCATCACCCAGTGCTAGGAAGGGAC
                      ____________________________________________________________
consensus             CACCTTCTAGACGCGGGAGGTCATCATCTTACTCCTCATCACCCAGTGCTAGGAAGGGAC
 
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JMFN044L06-           CACGCAAAATATCTAGGAGTCGCAGTCCTAAAAGGCCTTTAAGAGGAAAAAGCCCCAGCA
JMFN039K20-           CACGCAAAATATCTAGGAGTCGCAGTCCTAAAAGGCCTTTAAGAGGAAAAAGCCCCAGCA
rJMSF019E18+          CACGCAAAATATCTAGGAGTCGCAGTCCTAAAAGGCCTTTAAGAGGAAAAAGCCCCAGCA
rJMSF028I12+          CACGCAAAATATCTAGGAGTCGCAGTCCTAAAAGGCCTTTAAGAGGAAAAAGCCCCAGCA
                      ____________________________________________________________
consensus             CACGCAAAATATCTAGGAGTCGCAGTCCTAAAAGGCCTTTAAGAGGAAAAAGCCCCAGCA
 
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JMFN044L06-           ACAGTAGCAGCAGTGGGTCCCCACCACCATCACGGAAGCCCTAGGGTGGAAGTTAGTAGT
JMFN039K20-           ACAGTAGCAGCAGTGGGTCCCCACCACCATCACGGAAGCCCTAGGGTGGAAGTTAGTAGT
rJMSF019E18+          ACAGTAGCAGCAGTGGGTCCCCACCACCATCACGGAAGCCCTAGGGTGGAAGTTAGTAGT
rJMSF028I12+          ACAGTAGCAGCAGTGGGTCCCCACCACCATCACGGAAGCCCTAGGGTGGAAGTTAGTAGT
                      ____________________________________________________________
consensus             ACAGTAGCAGCAGTGGGTCCCCACCACCATCACGGAAGCCCTAGGGTGGAAGTTAGTAGT
 
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JMFN044L06-           AAATTTCATGTACCGGTTGGCATCTGGATATGATCTA                       
JMFN039K20-           AAATTTCATGTACCGGTTGGCATCTGGATATGATCTATAAGAGTTTTAGCTTAATTGTGT
rJMSF019E18+          AAATTTCATGTACCGGTTGGCATCTGGATATGATCTATAAGAGTTTTAGCTTAATTGTGT
rJMSF028I12+          AAATTTCATGTACCGGTTGGCATCTGGATATGATCTATAAGAGTTTTAGCTTAATTGTGT
                      ____________________________________________________________
consensus             AAATTTCATGTACCGGTTGGCATCTGGATATGATCTATAAGAGTTTTAGCTTAATTGTGT
 
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JMFN039K20-           ATCCTCTGTAATGTGAAGTTGATTGTTGGATGTGGAATCTGTCTATCATGGTATGTCTTT
rJMSF019E18+          ATCCTCTGTAATGTGAAGTTGATTGTTGGATGTGGAATCTGTCTATCATGGTATGTCTTT
rJMSF028I12+          ATCCTCTGTAATGTGAAGTTGATTGTTGGATGTGGAATCTGTCTATCATGGTATGTCTTT
                      ____________________________________________________________
consensus             ATCCTCTGTAATGTGAAGTTGATTGTTGGATGTGGAATCTGTCTATCATGGTATGTCTTT
 
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JMFN039K20-           TCATTAGTTTGAGTGTGAGATAATTTGAGCT                             
rJMSF019E18+          TCATTAGTTTGAGTGTGAGATAATTTGAGCT                             
rJMSF028I12+          TCATTAGTTTGAGTGTGAGATAATTTGAGCTTAAAAGAACCAGACATTTGCATAGGATGG
                      ____________________________________________________________
consensus             TCATTAGTTTGAGTGTGAGATAATTTGAGCTTAAAAGAACCAGACATTTGCATAGGATGG