Contig 012650:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016K18Sequence524012650 (3)ref|XP_009614965.1|7e-20PREDICTED: putative late blight resistance protein homolog R1B-14 [Nicotiana to700011294 (2)ref|XP_009612668.1|4e-75PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic
JMSF027P10Sequence630012650 (3)ref|XP_009614965.1|1e-17PREDICTED: putative late blight resistance protein homolog R1B-14 [Nicotiana to435012650 (3)ref|XP_009614364.1|8e-05PREDICTED: putative late blight resistance protein homolog R1B-14 [Nicotiana to

Alignment

This contig is upended


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JMSF016K18+ TAATTAAAAAGAGAGAGAGAGAGAGAGGAGTTGAGTTGCCTTAGCCTGGACAGCTC
                      ____________________________________________________________
consensus TAATTAAAAAGAGAGAGAGAGAGAGAGGAGTTGAGTTGCCTTAGCCTGGACAGCTC
 
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JMSF016K18+ CTCTGTTGGGTAACGCTTCATCTCGGAGAGCATTAAGGCCATAGTTCGGATCCTTTCGGA
                      ____________________________________________________________
consensus CTCTGTTGGGTAACGCTTCATCTCGGAGAGCATTAAGGCCATAGTTCGGATCCTTTCGGA
 
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JMSF016K18+ TCCCATCCATGCTTTCCCGAACATTCCGAATCTCTTCGGCGAGTTCCTTTTTCCGACCGG
                      ____________________________________________________________
consensus TCCCATCCATGCTTTCCCGAACATTCCGAATCTCTTCGGCGAGTTCCTTTTTCCGACCGG
 
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JMSF016K18+ GGTGTTCGATGTCCAGGTAGCGTTTCCATTTCTTGTCGTAGTGGAATTTGGCGGCCACCA
JMSF027P10- GTAGTGGAATTTGGCGGCCACCA
rJMSF027P10+ GGCGGCCACCA
                      ____________________________________________________________
consensus GGTGTTCGATGTCCAGGTAGCGTTTCCATTTCTTGTCGTAGTGGAATTTGGCGGCCACCA
 
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JMSF016K18+ CATATCTGTCGATCAGATCCTCCGCCTTGTTCACCACCGTTCGGATCTTGGTGATGAGTC
JMSF027P10- CATATCGGTCGATGAGATCCTCGGCCTTGTTGACCACCGCTCGGATCTTGGTGATGAGTC
rJMSF027P10+ CATATCGGTCGATGAGATCCTCNGCCTTGTTGACCNCCGCTCGGATCTTGGNGATGAGTC
                      ____________________________________________________________
consensus CATATCGGTCGATGAGATCCTCGGCCTTGTTGACCACCGCTCGGATCTTGGTGATGAGTC
 
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JMSF016K18+ GTTTGAGGATTTCGTTGTCGTAGCGGGCCTTTCCGGCTTCTCTGAGGAAGGCCTTGAAGT
JMSF027P10- GTTTGAGGATTTCGTTGTCGTAGCGGACCTTTCCGGCTTCTCTGAGGAAGGCCTTGAAGT
rJMSF027P10+ GTTTGAGGAGNTCGTTGTCGNAGNGGACCTNNCNGGCTTCTANGAGGAANNCCNNGAAGT
                      ____________________________________________________________
consensus GTTTGAGGATTTCGTTGTCGTAGCGGACCTTTCCGGCTTCTCTGAGGAAGGCCTTGAAGT
 
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JMSF016K18+ CGCCCAGGTCTTCTAGAAGCTTCTCGACGTCGTCCTTGAGGCCGGAGATGAGCTGGATGT
JMSF027P10- CGCCCAGGACATCTAGAAGCTTCTCGACGTCGTCCTTGAGGCCGGAGATGAGCTGGATGT
rJMSF027P10+ CGNCCAGGACATCTAGAAGCTTCTNGACGTNGTCCNNGAGGCCGGAGATGAGCTGGATGT
                      ____________________________________________________________
consensus CGCCCAGGACATCTAGAAGCTTCTCGACGTCGTCCTTGAGGCCGGAGATGAGCTGGATGT
 
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JMSF016K18+ TCTCTTTCAGAAGCTGAGTCAAGTTCTCTACCAGCAAATTCACTACCACTTCTGCCATCT
JMSF027P10- TCTCTTTCAGAAGCTGGGTCAAGTTCTCTACCAGCAAATTCACTACCACTTCCGCCATCT
rJMSF027P10+ TNTCTNNCAGAAGCTGGGTCAANTTCTCTACCAGCAAATTCACTACCACTTCCGCCATCT
                      ____________________________________________________________
consensus TCTCTTTCAGAAGCTGGGTCAAGTTCTCTACCAGCAAATTCACTACCACTTCCGCCATCT
 
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JMSF016K18+ C
JMSF027P10- CTCTCTCTCTCTCTAGACCTCGTTTTCTGCTCAAAGATTCTCAGTAGTAGTAGTAGAGGA
rJMSF027P10+ NTCNCTCTCTNTCTAGACCTCGTTTTCTGCTCAAAGATTCTCAGTAGTCGTAGTNGAGGA
                      ____________________________________________________________
consensus CTCTCTCTCTCTCTAGACCTCGTTTTCTGCTCAAAGATTCTCAGTAGTCGTAGTAGAGGA
 
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JMSF027P10- AGCCATTGCCAGCTCAAAGGTTCTTTAGTCCGATTATTGAGTTGACTTGCTTAATTTCTT
rJMSF027P10+ ANCCATTGCCAGCTCAAAGGTTCNANAGTCCGATTATTGAGTTGACTTGCTTAATTTCTT
                      ____________________________________________________________
consensus AGCCATTGCCAGCTCAAAGGTTCTTTAGTCCGATTATTGAGTTGACTTGCTTAATTTCTT
 
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JMSF027P10- ATTCTC
rJMSF027P10+ ATTCTCCNCCNNTATCTACTCCCATCAAAGTTTGATTACCNCAAANGTGTAACCATATCA
                      ____________________________________________________________
consensus ATTCTCCNCCNNTATCTACTCCCATCAAAGTTTGATTACCNCAAANGTGTAACCATATCA