Contig 012645:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF027H04Sequence661012645 (2)ref|XP_004246666.1|3e-74PREDICTED: fasciclin-like arabinogalactan protein 12 [Solanum lycopersicum]564012645 (2)ref|XP_009769903.1|3e-40PREDICTED: fasciclin-like arabinogalactan protein 12 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF027H04- GATCAGTGCATTATAACTCCATTTTTTGGATCAACCAGTAAAAGAGTGT
                      ____________________________________________________________
consensus GATCAGTGCATTATAACTCCATTTTTTGGATCAACCAGTAAAAGAGTGT
 
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JMSF027H04- GCAAGAAAGGAAAAATGAATCAGAACACTAACCTCTCGGTTTTCTTGTTTGTCTTCCTCG
                      ____________________________________________________________
consensus GCAAGAAAGGAAAAATGAATCAGAACACTAACCTCTCGGTTTTCTTGTTTGTCTTCCTCG
 
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JMSF027H04- TCCAATGCACCGCCATTCTTTCTCAGTCTCCAGCACCAGCCCCGGCACCACCTGGTCCGA
                      ____________________________________________________________
consensus TCCAATGCACCGCCATTCTTTCTCAGTCTCCAGCACCAGCCCCGGCACCACCTGGTCCGA
 
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JMSF027H04- CGAATATCACCGCTATACTTGAAAAGGCTAGCCAGTTCACGATGTTCATCCGGCTGTTGA
                      ____________________________________________________________
consensus CGAATATCACCGCTATACTTGAAAAGGCTAGCCAGTTCACGATGTTCATCCGGCTGTTGA
 
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JMSF027H04- AGAGCACACAGACGGATGACAGGATCACCTCAGAGCTCAACGGCACAAACCAAGGCCTGA
                      ____________________________________________________________
consensus AGAGCACACAGACGGATGACAGGATCACCTCAGAGCTCAACGGCACAAACCAAGGCCTGA
 
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JMSF027H04- CCGTCTTTGCTCCCACAGACAACGCTTTCGCCAATCTGAAAACGGGCACCCTCAACTCCT
rJMSF027H04+ TGAAAACGGGCACCCTCAANTCCT
                      ____________________________________________________________
consensus CCGTCTTTGCTCCCACAGACAACGCTTTCGCCAATCTGAAAACGGGCACCCTCAACTCCT
 
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JMSF027H04- TTGACGACGAACAGAAGTCCGAGCTGATTAATTTCCACATGCTCCCAATGTTCTTCTCCG
rJMSF027H04+ TTGAAGACGAACNGAAGTCCGAGNTGATTAATTTNCACANGCTCCCAATGNTTTTCTCNG
                      ____________________________________________________________
consensus TTGACGACGAACAGAAGTCCGAGCTGATTAATTTCCACATGCTCCCAATGTTTTTCTCCG
 
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JMSF027H04- TCTCCCAGTTTCAGACCGCCAGCAATCCCCTCCGCACACAGGCTGGTGGCACTAGCGACA
rJMSF027H04+ TTTCCCAGNTTCAGACCGCCAGCAATCCCCTNCGCACACAGGCTGGTGGCACTAGCGACA
                      ____________________________________________________________
consensus TTTCCCAGTTTCAGACCGCCAGCAATCCCCTCCGCACACAGGCTGGTGGCACTAGCGACA
 
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JMSF027H04- GGGAGTTCCCGCTGAACATCACCACCTCGGGGAACTCTGTGAACATAACTACAGGGATCG
rJMSF027H04+ GGGAGTTCCCGCTGAACATCACCNCCTNGGGGAACTCTGTGAACATAACTACAGGGATCG
                      ____________________________________________________________
consensus GGGAGTTCCCGCTGAACATCACCACCTCGGGGAACTCTGTGAACATAACTACAGGGATCG
 
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JMSF027H04- TCAATGCCACAGTTGCCAACACAATATACACCGATNACCAGCTAGCTGTGTATCAAGTCG
rJMSF027H04+ TCAATGCCACAGTTGCCAACACAANATACNCCGATAACCAGCTAGCTGTGTATCAAGTCG
                      ____________________________________________________________
consensus TCAATGCCACAGTTGCCAACACAATATACACCGATAACCAGCTAGCTGTGTATCAAGTCG
 
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JMSF027H04- ATAAAGTGCTGCTTCCCTTGAAATTCTTTGTGCCACCGGCTCCAGCTTCGGCTCCTGCAC
rJMSF027H04+ ATAAAGTGCTGCNTCCCTTGAAATTCTTTGTGCCACCGGNTCCAGCTTNGGCTCCTGCAC
                      ____________________________________________________________
consensus ATAAAGTGCTGCTTCCCTTGAAATTCTTTGTGCCACCGGCTCCAGCTTCGGCTCCTGCAC
 
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JMSF027H04- CTTCAANGCCAA
rJMSF027H04+ CTTCAAAGCCAAAAAAAGGATTGCGATCTGCAGCTTNTTCCTCCGGATCAGATGATGACG
                      ____________________________________________________________
consensus CTTCAAAGCCAAAAAAAGGATTGCGATCTGCAGCTTNTTCCTCCGGATCAGATGATGACG
 
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rJMSF027H04+ CCCCAGNTGACTCCTNTGGTGTTACCTGTGTCATTCAAAAGGCGTTGCAGGCAATAGCCT
                      ____________________________________________________________
consensus CCCCAGNTGACTCCTNTGGTGTTACCTGTGTCATTCAAAAGGCGTTGCAGGCAATAGCCT
 
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rJMSF027H04+ TNGCCTNTGTTGCATTTTTCTNGTACTTGNGAGAGACTGCAACTGTTANTNTATNGTGAT
                      ____________________________________________________________
consensus TNGCCTNTGTTGCATTTTTCTNGTACTTGNGAGAGACTGCAACTGTTANTNTATNGTGAT
 
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rJMSF027H04+ CTNGTGTGCTAATGCTGTTGTGAGTTTCATATAAGTAAATCATTGTTTNCAAGGAAAAAA
                      ____________________________________________________________
consensus CTNGTGTGCTAATGCTGTTGTGAGTTTCATATAAGTAAATCATTGTTTNCAAGGAAAAAA