Contig 012642:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005E06Sequence456000954 (3)ref|XP_006362049.1|117PREDICTED: ATP-dependent RNA helicase DBP2-like [Solanum tuberosum]541012642 (3)emb|CDP19193.1|6e-15unnamed protein product [Coffea canephora]
JMSF026N10Sequence667000954 (3)ref|XP_011089533.1|4e-73PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Sesamum indicum]765012642 (3)ref|XP_011089533.1|4e-59PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Sesamum indicum]
JMSF045L16Sequence780000954 (3)ref|XP_011089533.1|3e-95PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Sesamum indicum]702012642 (3)ref|XP_011089533.1|1e-35PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF026N10+ CCACTGATGGTGCATCTCGTGGATTGGATGTCAATGGGGTTGCTCATG
                      ____________________________________________________________
consensus CCACTGATGGTGCATCTCGTGGATTGGATGTCAATGGGGTTGCTCATG
 
. : . : . : . : . : . :
rJMSF045L16+ TTCCAAAGACCATGGAAGATTATGTCCATCGGATTGGGAGGACCG
rJMSF026N10+ TAATTAATCTAGATCTTCCAAAGACCATGGAAGATTATGTCCATCGGATTGGGAGGACCG
                      ____________________________________________________________
consensus TAATTAATCTAGATCTTCCAAAGACCATGGAAGATTATGTCCATCGGATTGGGAGGACCG
 
. : . : . : . : . : . :
rJMSF045L16+ GTCGTGCAGGATCAACAGGCCAAGCCACATCATTTTTATACTGATCGAGATATGTATCTT
rJMSF026N10+ GTCGTGCAGGATCAACAGGCCAAGCCACATCA-TTTTATACTGATCGAGATATGTATCTT
                      ____________________________________________________________
consensus GTCGTGCAGGATCAACAGGCCAAGCCACATCATTTTTATACTGATCGAGATATGTATCTT
 
. : . : . : . : . : . :
rJMSF005E06+ GCAATACTGTTACTTTTGCG
rJMSF045L16+ GTGGCACAAATAAGGAAAGCAATTGCAGATGTTGGGTCTGGCAATACTGTTACTTTTGCG
rJMSF026N10+ GTGGCACAAATAAGGAAAGCAATTGCAGATGTTGGGTCTGGCAATACTGTTACTTTTGCG
                      ____________________________________________________________
consensus GTGGCACAAATAAGGAAAGCAATTGCAGATGTTGGGTCTGGCAATACTGTTACTTTTGCG
 
. : . : . : . : . : . :
rJMSF005E06+ ACTGGAAAGACTGCCAGAAGGAAGGAGAGAGAAGCTGCAGCTGCTCATAAGGAAGCAAAT
rJMSF045L16+ ACTGGAAAGACTGCCAGAAGGAAGGAGAGAGAAGCTGCAGCTGCTCATAAGGAAGCAAAT
rJMSF026N10+ ACTGGAAAGACTGCCAGAAGGAAGGAGAGAGAAGCTGCAGCTGCTCATAAGGAAGCAAAT
                      ____________________________________________________________
consensus ACTGGAAAGACTGCCAGAAGGAAGGAGAGAGAAGCTGCAGCTGCTCATAAGGAAGCAAAT
 
. : . : . : . : . : . :
rJMSF005E06+ ATTGCACTCTCAAAACTGTCCTTAATGGGGTCCACTNCAATAAACGTTGAGGACAAGTAT
rJMSF045L16+ ATTGCACTCTCAAAACTGTCCTTAATGGGGTCCACTCCAATAAACGTTGAGGACAAGTAT
rJMSF026N10+ ATTGCACTCTCAAAACTGTCCTTAATGGGGTCCACTCCAATAAACGTTGAGGACAAGTAT
                      ____________________________________________________________
consensus ATTGCACTCTCAAAACTGTCCTTAATGGGGTCCACTCCAATAAACGTTGAGGACAAGTAT
 
. : . : . : . : . : . :
rJMSF005E06+ AGGCACATGATTGCCCCTGCAATGTCCAGGAAAGAGGGAGCTGCAGACGGTGCTTGGGAT
rJMSF045L16+ AGGCACATGATTGCCCCTGCAATGTCCAGGAAAGAGGGAGCTGCAGACGGTGCTTGGGAT
rJMSF026N10+ AGGCACATGATTGCCCCTGCAATGTCCAGGAAAGAGGGAGCTGCAGACGGTGCTTGGGAT
                      ____________________________________________________________
consensus AGGCACATGATTGCCCCTGCAATGTCCAGGAAAGAGGGAGCTGCAGACGGTGCTTGGGAT
 
. : . : . : . : . : . :
rJMSF005E06+ GATTGAAAATCAAGAGCTGCAGAGACCCTTTCCCANTCATCTGAGTTTGAGTCTTATGCT
rJMSF045L16+ GATTGAAAATCAAGAGCTGCAGAGACCCTTTCCCACTCATCTGAGTTTGAGTCTTATGCT
rJMSF026N10+ GATTGAAAATCAAGAGCTGCAGAGACCCTTTCCCACTCATCTGAGTTTGAGTCTTATGCT
                      ____________________________________________________________
consensus GATTGAAAATCAAGAGCTGCAGAGACCCTTTCCCACTCATCTGAGTTTGAGTCTTATGCT
 
. : . : . : . : . : . :
rJMSF005E06+ GCACATTTAGTACCTTGTGAATGGAGAAAGCAGCCAGTCATTCACAGCCAAGTGTGCTCC
rJMSF045L16+ GCACATTTAGTACCTTGTGAATGGAGAAAGCAGCCAGTCATTCACAGCCAAGTGTGCTCC
rJMSF026N10+ GCACATTTAGTACCTTGTGAATGGAGAAAGCAGCCAGTCATTCACAGCCAAGTGTGCTCC
                      ____________________________________________________________
consensus GCACATTTAGTACCTTGTGAATGGAGAAAGCAGCCAGTCATTCACAGCCAAGTGTGCTCC
 
. : . : . : . : . : . :
rJMSF005E06+ AAAAAGGCTAGAAACTAGCTTTCCTAGCATGTGTACATTCTCCCTTCCATAGTTATTCCT
rJMSF045L16+ AAAAAGGCTAGAAACTAGCTTTCCTAGCATGTGTACATTCTCCCTTCCATAGTTATTCCT
rJMSF026N10+ AAAAAGGCTAGAAACTAGCTTTCCTAGCATGTGTACATTCTCCCTTCCATAGTTATTCCT
                      ____________________________________________________________
consensus AAAAAGGCTAGAAACTAGCTTTCCTAGCATGTGTACATTCTCCCTTCCATAGTTATTCCT
 
. : . : . : . : . : . :
rJMSF005E06+ GCTATTGATTTCAGGTCTTNCACACAGTTGTCCNTGTNTTCNGTAGCACCTTTGCTAGCA
rJMSF045L16+ -CTATTGATTTCAGGTCTTACACACAGTTGTCCTTGTTTTCTGTAGCACCTTTGCTAGCA
rJMSF026N10+ -CTATTGATTTCAGGTCTTACACACAGTTGTCCTTGTTTTCTGTAGCACCTTTGCTAGCA
                      ____________________________________________________________
consensus -CTATTGATTTCAGGTCTTACACACAGTTGTCCTTGTTTTCTGTAGCACCTTTGCTAGCA
 
. : . : . : . : . : . :
rJMSF005E06+ CAGTTAGATCATTTAGATGTCCGTCTGGGATATTTTCGTANNTATGGGNTNGTTAGNGAA
rJMSF045L16+ CA-TTAGATCATTTAGATGTCCGTCTTTGATATTTTCGTATTTATGGGTTTGTTAGTGAA
rJMSF026N10+ CA-TTAGATCATTTAGATGTCCGTCTTTGATATTTTCGTATTTATGGGTTTGTTAGTGAA
                      ____________________________________________________________
consensus CA-TTAGATCATTTAGATGTCCGTCTTTGATATTTTCGTATTTATGGGTTTGTTAGTGAA
 
. : . : . : . : . : . :
rJMSF005E06+ TGAGGCAGCAGTACTATAGTATNGNACTATTGTGTAACAAT
rJMSF045L16+ TGAGGCAGCAGTACTATAGTATTGTACTATTGTGTAACAATTTACTCTGCTCTGTCTGC
rJMSF026N10+ TGAGGCAGCAGTACTATAGTATTGTACTATTGTGTAACAATTTACTCTGCTCTGTCTGCT
                      ____________________________________________________________
consensus TGAGGCAGCAGTACTATAGTATTGTACTATTGTGTAACAATTTACTCTGCTCTGTCTGCT