| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF025D07 | Sequence | 639 | 002279 (4) | ref|XP_006469773.1| | 154 | PREDICTED: uncharacterized protein LOC102616843 [Citrus sinensis] | 758 | 012629 (3) | ref|XP_006467327.1| | 115 | PREDICTED: uncharacterized protein LOC102625297 [Citrus sinensis] |
| JMSF027I11 | Sequence | 632 | 002279 (4) | ref|XP_006469773.1| | 155 | PREDICTED: uncharacterized protein LOC102616843 [Citrus sinensis] | 656 | 012629 (3) | ref|XP_006489961.1| | 92.0 | PREDICTED: uncharacterized protein LOC102608276 [Citrus sinensis] |
| JMSF050M03 | Sequence | 641 | 002279 (4) | ref|XP_006469773.1| | 157 | PREDICTED: uncharacterized protein LOC102616843 [Citrus sinensis] | 601 | 012629 (3) | ref|XP_006489961.1| | 82.0 | PREDICTED: uncharacterized protein LOC102608276 [Citrus sinensis] |
This contig is upended
. : . : . : . : . : . :
rJMSF025D07+ TGGTGGACTGTACCTTTGCTAGAACATGTTGGAGACCTTCA
____________________________________________________________
consensus TGGTGGACTGTACCTTTGCTAGAACATGTTGGAGACCTTCA
. : . : . : . : . : . :
rJMSF025D07+ GGTGTTCACCTCAGTGGCTCAAGTGACCATTCTTTTTCAAATTGGGTGAATCACAATATC
____________________________________________________________
consensus GGTGTTCACCTCAGTGGCTCAAGTGACCATTCTTTTTCAAATTGGGTGAATCACAATATC
. : . : . : . : . : . :
rJMSF027I11+ TGGTATGGACATAGGAAATCTNTCTCTGGTGGTTATTATCNGCTGGGAAATCTGGNAG
rJMSF050M03+ TGGGAAATCTGGAAG
rJMSF025D07+ CCTGGTATGGACATAGGAAATCTCTCTCTGGTGGTTATTATCTGCTGGGAAATCTGGAAG
____________________________________________________________
consensus CCTGGTATGGACATAGGAAATCTCTCTCTGGTGGTTATTATCTGCTGGGAAATCTGGAAG
. : . : . : . : . : . :
rJMSF027I11+ CAGAGGAATGCCAAACTTNGGAACAATTCATNCANTNTTCATGAACATCANCTTATTCGT
rJMSF050M03+ CAGNGGAATGNCAAACTNTGGAACAANTCATCCNCTCTTCATGAACNTCAANTTATTNGT
rJMSF025D07+ CAGAGGAATGCCAAACTTTGGAACAATTCATCCACTCTTCATGAACATCAACTTATTCGT
____________________________________________________________
consensus CAGAGGAATGCCAAACTTTGGAACAATTCATCCACTCTTCATGAACATCAACTTATTCGT
. : . : . : . : . : . :
rJMSF027I11+ ATGGCAAAGAGTTTCTTAGGTGAATGGAAAGAGGCTACACATTTAATTCATCCCTCTTCT
rJMSF050M03+ ATGGCAAAGAGTTTTTTAGGNGAATGGAAAGAGGCTACACATTTAATTCATCCCTCTTGT
rJMSF025D07+ ATGGCAAAGAGTTTCTTAGGTGAATGGAAAGAGGCTACACATTTAATTCATCCCTCTTCT
____________________________________________________________
consensus ATGGCAAAGAGTTTCTTAGGTGAATGGAAAGAGGCTACACATTTAATTCATCCCTCTTCT
. : . : . : . : . : . :
rJMSF027I11+ CATTCAGACTCCATCCCATCACACAAGTGGACTCGCCCTCANCCAGGCATGATGAAGATG
rJMSF050M03+ CATTCAGACTCCATCCCATCACACAAGTGGACTCGCCCTCAACCAGGCATGATGAAGATG
rJMSF025D07+ CATTCAGACTCCATCCCATCACACAAGTGGACTCGCCCTCAACCAGGCATGATGAAGATG
____________________________________________________________
consensus CATTCAGACTCCATCCCATCACACAAGTGGACTCGCCCTCAACCAGGCATGATGAAGATG
. : . : . : . : . : . :
rJMSF027I11+ AACGTCGATGCGACGTTAAACAGTTCCGGAGCGGCCATGGGTATGGGATGCGTTATCCGC
rJMSF050M03+ AACGTCGATGCGACGTTAAACAGTTCCGGAGCGGNCATGGGTCTGGGATGCGTTATCCGC
rJMSF025D07+ AACGTCGATGCGACGTTAAACAGTTCCGGAGCGGCCATGGGTCTGGGATGCGTTATCCGC
____________________________________________________________
consensus AACGTCGATGCGACGTTAAACAGTTCCGGAGCGGCCATGGGTCTGGGATGCGTTATCCGC
. : . : . : . : . : . :
rJMSF027I11+ GATGAAGATGGAACCTTCATAGTAGCCCGGGGAGTTCAGNGGAAAGACACNTTCACACCG
rJMSF050M03+ GATGAAGATGGAACCTTCATAGTAGCCCGGGGAGTTCAGTGGAAAGNCACNTTCACACCG
rJMSF025D07+ GATGAAGATGGAACCTTCATAGTAGCCCGGGGAGTTCAGTGGAAAGACACCTTCACACCG
____________________________________________________________
consensus GATGAAGATGGAACCTTCATAGTAGCCCGGGGAGTTCAGTGGAAAGACACCTTCACACCG
. : . : . : . : . : . :
rJMSF027I11+ AGAGAGACTGAAGCAGTGGCCATTCGTGAGGCTTTAAGCTGGCTAAAAGCACACAANTNT
rJMSF050M03+ AGAGAGACTGAAGCAGNGGCCATTCNTGAGGCTTTAAGCTGGCTAAAAG--CACAANTNT
rJMSF025D07+ AGAGAGACTGAAGCAGTGGCCATTCGTGAGGCTTTAAGCTGGCTAAAAGCACACAACTTT
____________________________________________________________
consensus AGAGAGACTGAAGCAGTGGCCATTCGTGAGGCTTTAAGCTGGCTAAAAGCACACAACTTT
. : . : . : . : . : . :
rJMSF027I11+ GATAATTTGTAGGTGGAATNTGACTCANNGCAAACTGTCCAGGCCATTAAAGCNCCNNGC
rJMSF050M03+ GATAATTTGTAGGTGGAATNTGACTCANNGCAAACTGTCCAGGCCATTAANGCNCCNNGC
rJMSF025D07+ GATAATTTGTAGGTGGAATCTGACTCACTGCAAACTGTCCAGGCCATTAAAGCACCTTGC
____________________________________________________________
consensus GATAATTTGTAGGTGGAATCTGACTCACTGCAAACTGTCCAGGCCATTAAAGCACCTTGC
. : . : . : . : . : . :
rJMSF027I11+ GGTTTTNTGTCCTTTCNCTTGATCTTGAAGACATTAAACACATGTTAAATAACTTTAGAA
rJMSF050M03+ GGTTTTNTGTCCTTTCACTTGATCTTGAAGACATTAANCACATGTTAAATAACTTTAGAA
rJMSF025D07+ GGTTTTTTGTCCTTTCACTTGATCTTGAAGACATTAAACACATGTTAAATAACTTTAGAA
____________________________________________________________
consensus GGTTTTTTGTCCTTTCACTTGATCTTGAAGACATTAAACACATGTTAAATAACTTTAGAA
. : . : . : . : . : . :
rJMSF027I11+ ATGTGTNTATTTCGTTTGCTAAGAGATCACGCGAATCCAGGCAGCCCACTTGTTAACCAT
rJMSF050M03+ ATGTGTNTATTTCGTTTGCTAAGAGATCA
rJMSF025D07+ ATGTGTTTATTTCGTTTGCTAAGAGATCA--GCGAACCAGGCAGCCCACTTGTTAACCA-
____________________________________________________________
consensus ATGTGTTTATTTCGTTTGCTAAGAGATCACGGGGATCCAGGCAGCCCACTTGTTAACCAT
. : . : . : . : . : . :
rJMSF027I11+ CGCAGTCTAGATCCTTGTNTGATCCCTCGGAGTAGTTTCTTAATCCTCCTCCTATCAT
rJMSF025D07+ CGCAGTCTAGATCCTTGTCTGATCCCTCGGAGTAGTTTCTTAATCCTCCTCCTATCATTT
____________________________________________________________
consensus CGCAGTCTAGATCCTTGTCTGATCCCTCGGAGTAGTTTCTTAATCCTCCTCCTATCATTT