Contig 012625:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF023E08Sequence680002233 (2)ref|XP_006355400.1|6e-69PREDICTED: AMSH-like ubiquitin thioesterase 3-like [Solanum tuberosum]743012625 (2)ref|XP_011009866.1|3e-123PREDICTED: AMSH-like ubiquitin thioesterase 3 isoform X2 [Populus euphratica]
JMSF024I17Sequence681002233 (2)ref|XP_006355400.1|1e-69PREDICTED: AMSH-like ubiquitin thioesterase 3-like [Solanum tuberosum]773012625 (2)ref|XP_011009857.1|5e-124PREDICTED: AMSH-like ubiquitin thioesterase 3 isoform X1 [Populus euphratica]

Alignment

This contig is upended


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rJMSF023E08+                   TGGGCCAGNTAAACCCCAGGATGGGATGACTGGTTCTAATGCTTATCAACA
rJMSF024I17+                 CCTGGGCCAGTTAAACCCCAGGATGGGATGACTGGTTCTAATGCTTATCAACA
                      ____________________________________________________________
consensus                    CCTGGGCCAGTTAAACCCCAGGATGGGATGACTGGTTCTAATGCTTATCAACA
 
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rJMSF023E08+          TCTGCATATTCCAGTGAAGATGATGGACGATTTCTTGAGGTTAGCACGAGCTAATACAGC
rJMSF024I17+          TCTGCATATTCCAGTGAAGATGATGGACGATTTCTTGAGGTTAGCACGAGCTAATACAGC
                      ____________________________________________________________
consensus             TCTGCATATTCCAGTGAAGATGATGGACGATTTCTTGAGGTTAGCACGAGCTAATACAGC
 
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rJMSF023E08+          AAAAAACTTAGAAACATGTGGTGTTCTTGCTGGTTCACTGAAGAACAGAGTATTTCAAAT
rJMSF024I17+          AAAAAACTTAGAAACATGTGGTGTTCTTGCTGGTTCACTGAAGAACAGAGTATTTCAAAT
                      ____________________________________________________________
consensus             AAAAAACTTAGAAACATGTGGTGTTCTTGCTGGTTCACTGAAGAACAGAGTATTTCAAAT
 
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rJMSF023E08+          CACTAACCTTATAATTCCAAAGCAAGAATCAACATCAGATTCATGCCAGACATTGAATGA
rJMSF024I17+          CACTAACCTTATAATTCCAAAGCAAGAATCAACATCAGATTCATGCCAGACATTGAATGA
                      ____________________________________________________________
consensus             CACTAACCTTATAATTCCAAAGCAAGAATCAACATCAGATTCATGCCAGACATTGAATGA
 
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rJMSF023E08+          AGAAGAAATATTTGAGGTTCAGGACAAACTTTCTCTTTTTCCTCTTGGATGGATTCATAC
rJMSF024I17+          AGAAGAAATATTTGAGGTTCAGGACAAACTTTCTCTTTTTCCTCTTGGATGGATTCATAC
                      ____________________________________________________________
consensus             AGAAGAAATATTTGAGGTTCAGGACAAACTTTCTCTTTTTCCTCTTGGATGGATTCATAC
 
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rJMSF023E08+          CCATCCATCTCAAACATGTTTTATGTCATCAGTTGATCTGCACACACATTACTCCTATCA
rJMSF024I17+          CCATCCATCTCAAACATGTTTTATGTCATCAGTTGATCTGCACACACATTACTCCTATCA
                      ____________________________________________________________
consensus             CCATCCATCTCAAACATGTTTTATGTCATCAGTTGATCTGCACACACATTACTCCTATCA
 
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rJMSF023E08+          GATTATGTTGCCAGAGGCAATTGCAATCGTCATGGCTCCTACCGATGAATCCAGTCCTCA
rJMSF024I17+          GATTATGTTGCCAGAGGCAATTGCAATCGTCATGGCTCCTACCGATGAATCCAGTCCTCA
                      ____________________________________________________________
consensus             GATTATGTTGCCAGAGGCAATTGCAATCGTCATGGCTCCTACCGATGAATCCAGTCCTCA
 
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rJMSF023E08+          TGGTATCTTTCATTTGTCTGATCCCGGTGGTGTATCCGTAATTCGAAACTGTCAACAGCG
rJMSF024I17+          TGGTATCTTTCATTTGTCTGATCCCGGTGGTGTATCCGTAATTCGAAACTGTCAACAGCG
                      ____________________________________________________________
consensus             TGGTATCTTTCATTTGTCTGATCCCGGTGGTGTATCCGTAATTCGAAACTGTCAACAGCG
 
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rJMSF023E08+          CGGTTTCCACCCGCATGAAGAAGCTGAAGATGGAAGCCCCATCTATGAACACTGTTCTCA
rJMSF024I17+          CGGTTTCCACCCGCATGAAGAAGCTGAAGATGGAAGCCCCATCTATGAACACTGTTCTCA
                      ____________________________________________________________
consensus             CGGTTTCCACCCGCATGAAGAAGCTGAAGATGGAAGCCCCATCTATGAACACTGTTCTCA
 
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rJMSF023E08+          TGTGTATATGAATGCAAACTTGAAGTTTGATGTAGTAGATCTTCGATGACTTTGCAATTT
rJMSF024I17+          TGTGTATATGAATGCAAACTTGAAGTTTGATGTAGTAGATCTTCGATGACTTTGCAATTT
                      ____________________________________________________________
consensus             TGTGTATATGAATGCAAACTTGAAGTTTGATGTAGTAGATCTTCGATGACTTTGCAATTT
 
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rJMSF023E08+          TGTTTATCATTATCTGAAGCTTAGGAGAACCTAGCTTGTACAGCTTTTATTCGCACAATA
rJMSF024I17+          TGTTTATCATTATCTGAAGCTTAGGAGAACCTAGCTTGTACAGCTTTTATTCGCACAATA
                      ____________________________________________________________
consensus             TGTTTATCATTATCTGAAGCTTAGGAGAACCTAGCTTGTACAGCTTTTATTCGCACAATA
 
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rJMSF023E08+          TGCTGTCAGCCTATACTATTACATTTTTTGTAAATTTTTACTCATGCAAGATTGGTAGAG
rJMSF024I17+          TGCTGTCAGCCTATACTATTACATTTTTTGTAAATTTTTACTCATGCAAGATTGGTAGAG
                      ____________________________________________________________
consensus             TGCTGTCAGCCTATACTATTACATTTTTTGTAAATTTTTACTCATGCAAGATTGGTAGAG
 
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rJMSF023E08+          TTGGGGTATTGAATTTGTTTTTTCTCCATATT                            
rJMSF024I17+          TTGGGGTATTGAATTTGTTTTTTCTCCATATTGTGTCAACAATCCTGAATGCTATGGGTA
                      ____________________________________________________________
consensus             TTGGGGTATTGAATTTGTTTTTTCTCCATATTGTGTCAACAATCCTGAATGCTATGGGTA