Contig 012623:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003E15Sequence248005228 (3)588012623 (3)ref|XP_006340434.1|2e-22PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase-like [Solanum tuber
JMSF024B01Sequence640005228 (3)ref|XP_009615453.1|2e-75PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial-li304012623 (3)
JMSF038O05Sequence652005228 (3)ref|XP_009615453.1|4e-59PREDICTED: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1, mitochondrial-li238012623 (3)

Alignment

This contig is upended


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rJMSF003E15+                                    CTGTGGNTGNTGCAACAACATTTGNTNTTAAGAT
                      ____________________________________________________________
consensus                                       CTGTGGNTGNTGCAACAACATTTGNTNTTAAGAT
 
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rJMSF003E15+          TCCCCCTATTGGCNTTGGGGCCGGNCCNTTTTGCNGNGGTCNGGNGNTAGTTTATCNTGA
                      ____________________________________________________________
consensus             TCCCCCTATTGGCNTTGGGGCCGGNCCNTTTTGCNGNGGTCNGGNGNTAGTTTATCNTGA
 
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rJMSF003E15+          TTTGCTTGGGNTGATGCAACNTNCNCNTCNTGCCNAGGNTACTCCTAAATTCTGTAAACN
                      ____________________________________________________________
consensus             TTTGCTTGGGNTGATGCAACNTNCNCNTCNTGCCNAGGNTACTCCTAAATTCTGTAAACN
 
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rJMSF003E15+          ATATGGGCNNGTNGGGGNNGAAATCAACNGNGCNCTTTTGCNATNCNAGGNAGAAGNGNC
                      ____________________________________________________________
consensus             ATATGGGCNNGTNGGGGNNGAAATCAACNGNGCNCTTTTGCNATNCNAGGNAGAAGNGNC
 
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rJMSF003E15+          NAACGGTTNTTTNCCCGGNGCCGNTTATAGTCCGTATAAAATTAGCGNTGNTGACNNGGA
                      ____________________________________________________________
consensus             NAACGGTTNTTTNCCCGGNGCCGNTTATAGTCCGTATAAAATTAGCGNTGNTGACNNGGA
 
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rJMSF003E15+          TGGTTTCCTTCNCGAACTGCNGAAGTTGGGNTTTGNCGATGCAGCNTTTGCAGNTGNTAC
                      ____________________________________________________________
consensus             TGGTTTCCTTCNCGAACTGCNGAAGTTGGGNTTTGNCGATGCAGCNTTTGCAGNTGNTAC
 
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rJMSF003E15+          TGCTGCCGNGAAGNTTCNGNCNCCCCCCCCNAAATGNTCNGNGTATGTGNTAGAGAGNTA
rJMSF038O05+                                                    GTATGTGCTAGAGAGNTA
rJMSF024B01+                                                                    TA
                      ____________________________________________________________
consensus             TGCTGCCGNGAAGNTTCNGNCNCCCCCCCCNAAATGNTCNGNGTATGTGCTAGAGAGNTA
 
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rJMSF003E15+          AGTTTTTTTTTTTTGGTTACCCAAAGGTATCCCTCCAGTCGATAGCCAGAAGACTAATCC
rJMSF038O05+          AGNTTTTTTTTTTTGGTTACCCAAAGGTATCCCTCCAGTCGATAGCCAGAAGACTAATCC
rJMSF024B01+          AGNTTTTTTTTTTTGGTTACCCAAAGGTATCCCTCCAGTCGATAGCCAGAAGACTAATCC
                      ____________________________________________________________
consensus             AGTTTTTTTTTTTTGGTTACCCAAAGGTATCCCTCCAGTCGATAGCCAGAAGACTAATCC
 
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rJMSF003E15+          TCCGTCCCAACGGTCAGCACACTAAGTGGTAGGGGATTGGCCAGAGAGCTAAGTTGATAA
rJMSF038O05+          TCCGTCCCAACGGTCAGCACACTAAGTGGTAGGGGATTGGCCAGAGAGCTAAGTTGATAA
rJMSF024B01+          TCCGTCCCAACGGTCAGCACACTAAGTGGTAGGGGATTGGCCAGAGAGCTAAGTTGATAA
                      ____________________________________________________________
consensus             TCCGTCCCAACGGTCAGCACACTAAGTGGTAGGGGATTGGCCAGAGAGCTAAGTTGATAA
 
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rJMSF003E15+          TGCCTTCTATCTATAACTATTTGTCAAAAATATTTAGTTAGGTTTTTTTACTGCAATCTG
rJMSF038O05+          TGCCTTCTATCTATAACTATTTGTCAAAAATATTTAGTTAGGTTTTTTTACTGCAATCTG
rJMSF024B01+          TGCCTTCTATCTATAACTATTTGTCAAAAATATTTAGTTAGGTTTTTTTACTGCAATCTG
                      ____________________________________________________________
consensus             TGCCTTCTATCTATAACTATTTGTCAAAAATATTTAGTTAGGTTTTTTTACTGCAATCTG
 
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rJMSF003E15+          CATGCTAAAAA                                                 
rJMSF038O05+          CATGCTTAAAAAGCTAATT                                         
rJMSF024B01+          CATGCTTAAAAAGCTAATTTGACTAAAAGATGAAACAAGCTGCAATATTTCCACATTTTT
                      ____________________________________________________________
consensus             CATGCTTAAAAAGCTAATTTGACTAAAAGATGAAACAAGCTGCAATATTTCCACATTTTT
 
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rJMSF024B01+          TATTACTCTCTTAATCTTCTATCAGTTAAATCACAACACTAGAGTGACATGACGTGAGTT
                      ____________________________________________________________
consensus             TATTACTCTCTTAATCTTCTATCAGTTAAATCACAACACTAGAGTGACATGACGTGAGTT