Contig 012612:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022J14Sequence650022111ref|XP_010266722.1|4e-40PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 1 [Nelumbo nuc866012612 (3)ref|XP_009601187.1|3e-71PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 1 [Nicotiana t
JMSF025O13Sequence676012612 (3)emb|CDP05463.1|9e-44unnamed protein product [Coffea canephora]760012612 (3)

Alignment

This contig is upended


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JMSF025O13-                                  GAGAAAATGGCATCACTACAACTTCACCTGCGCATAA
                      ____________________________________________________________
consensus                                    GAGAAAATGGCATCACTACAACTTCACCTGCGCATAA
 
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JMSF025O13-           ATACAGGAAAGCCTTCAAATAAATTTTCCCAGACGGCCGGCGATGGAGTTTCCCACGGCG
                      ____________________________________________________________
consensus             ATACAGGAAAGCCTTCAAATAAATTTTCCCAGACGGCCGGCGATGGAGTTTCCCACGGCG
 
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JMSF025O13-           AGTTTGACCGATTGTGAGAAGGCGATGCCGGTGATTGGGTTGGGCACCTGTGCGTATCCC
                      ____________________________________________________________
consensus             AGTTTGACCGATTGTGAGAAGGCGATGCCGGTGATTGGGTTGGGCACCTGTGCGTATCCC
 
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JMSF025O13-           CGGCCCGACACCGGGACGACCAAGGCCGCAATTGTGGAAGCCATCAGGGCAGGATACCGG
                      ____________________________________________________________
consensus             CGGCCCGACACCGGGACGACCAAGGCCGCAATTGTGGAAGCCATCAGGGCAGGATACCGG
 
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JMSF025O13-           CACTTCGACACCGCCTTCGCTTACGGCTCAGAGAAGCCGCTCGGGGAGGCAATCGCCGAA
                      ____________________________________________________________
consensus             CACTTCGACACCGCCTTCGCTTACGGCTCAGAGAAGCCGCTCGGGGAGGCAATCGCCGAA
 
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JMSF025O13-           GCAGTGAATCTGGGGCTGGTCCGCCGCGAGGACCTCTTCGTCACAACTAAGCTGTGGGCC
                      ____________________________________________________________
consensus             GCAGTGAATCTGGGGCTGGTCCGCCGCGAGGACCTCTTCGTCACAACTAAGCTGTGGGCC
 
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JMSF025O13-           AGCTTTGCTCATCCGGATCAAGTTGTTCCTGCCTGCAAAATGAGCCTCCAGTGAGTCAAA
                      ____________________________________________________________
consensus             AGCTTTGCTCATCCGGATCAAGTTGTTCCTGCCTGCAAAATGAGCCTCCAGTGAGTCAAA
 
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JMSF025O13-           CTGTCACATATATATATTCATTCCTTCAAACCTTCATTGAGCCTATATATCCACAATTAT
rJMSF025O13+                                               TGAGCCTATATATCCACAATTAT
                      ____________________________________________________________
consensus             CTGTCACATATATATATTCATTCCTTCAAACCTTCATTGAGCCTATATATCCACAATTAT
 
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JMSF025O13-           ATATTGTATTCGCTATATGCATGTTTAATTTGGACACCTTTTTAGCGATCTAATTGGAAA
rJMSF025O13+          ATATTGTATTCGCTATATGCATGTTTAATTTGGACACCTTTTTAGCGATCTAATTGGAAA
                      ____________________________________________________________
consensus             ATATTGTATTCGCTATATGCATGTTTAATTTGGACACCTTTTTAGCGATCTAATTGGAAA
 
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JMSF025O13-           AAAAAATTGTCAAAATACAGATCTTAGTTATTATCCATACTTTGATATTTATGTGCCATA
rJMSF025O13+          AAAAAATTGTCAAAATACAGATCTTAGTTATTATCCATACTTTGATATTTATGTGCCATA
                      ____________________________________________________________
consensus             AAAAAATTGTCAAAATACAGATCTTAGTTATTATCCATACTTTGATATTTATGTGCCATA
 
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JMSF025O13-           TATTTTTTATTTGGAAGAAAAAATAATACTCCGGAGTATATTCTTTTGGATACATATTTT
rJMSF025O13+          TATTTTTTATTTGGAAGAAAAAATAATACTCCGGAGTATATTCTTTTGGATACATATTTT
                      ____________________________________________________________
consensus             TATTTTTTATTTGGAAGAAAAAATAATACTCCGGAGTATATTCTTTTGGATACATATTTT
 
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JMSF025O13-           TTTGAGTTAATTACTAAAATGGTATATTGACTATTACGA                     
rJMSF025O13+          TTTGAGTTAATTACTAAAATGGTATATTGACTATTACGAAATTATTAATTTGGTTCTTAA
                      ____________________________________________________________
consensus             TTTGAGTTAATTACTAAAATGGTATATTGACTATTACGAAATTATTAATTTGGTTCTTAA
 
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rJMSF025O13+          CTATTTTTGATGAATTAAGTCCCTCAATTTTAAATTTTTTAATCAATTTGGTCATCTTTT
                      ____________________________________________________________
consensus             CTATTTTTGATGAATTAAGTCCCTCAATTTTAAATTTTTTAATCAATTTGGTCATCTTTT
 
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rJMSF025O13+          AGTTTTGCCATTAGATATCTGTTAATTTAGAACTAAATTGGTAATTTCGCTATAGTCAAA
                      ____________________________________________________________
consensus             AGTTTTGCCATTAGATATCTGTTAATTTAGAACTAAATTGGTAATTTCGCTATAGTCAAA
 
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rJMSF025O13+          AGACTATTTTGATAATTAACTTTTCGAAGGAAATGGTACATGTGATGACCGAAATAGTCC
                      ____________________________________________________________
consensus             AGACTATTTTGATAATTAACTTTTCGAAGGAAATGGTACATGTGATGACCGAAATAGTCC
 
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rJMSF025O13+          ATTGACTAGCAAAATTATCAATTTGATCTCGAGTTAATAGATGTCTAACGACAAACAAAC
rJMSF022J14+                                                              AAACAAAC
                      ____________________________________________________________
consensus             ATTGACTAGCAAAATTATCAATTTGATCTCGAGTTAATAGATGTCTAACGACAAACAAAC
 
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rJMSF025O13+          GGAGGATGAAATTAATTAAGATTTTTAAAGTTGAGGGCTGTAATTGGTAAAGAAAAAGAG
rJMSF022J14+          GGAGGACCAAATTGGTTAAGATTTTTAAGGTTGAGGGACTTAATTGGTAAAAAAAAATAG
                      ____________________________________________________________
consensus             GGAGGATGAAATTGGTTAAGATTTTTAAGGTTGAGGGCTTTAATTGGTAAAGAAAAATAG
 
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rJMSF025O13+          TCAAGGACCAAATTTGTTATTTTGTTATAGTGAAGGGACCATTTCAATAATTAACTCT  
rJMSF022J14+          TCAAGGACCAAATTGGTAATTTTGCTATAGTCAAGGGACCATTTCGGTAATTAACTCTTT
                      ____________________________________________________________
consensus             TCAAGGACCAAATTTGTTATTTTGTTATAGTGAAGGGACCATTTCGGTAATTAACTCTTT
 
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rJMSF022J14+          ATAATTCTATATCCGTCATGCAGCCGATATTTTGTGATCCCACTGTGGAGAGGGAGTGGA
                      ____________________________________________________________
consensus             ATAATTCTATATCCGTCATGCAGCCGATATTTTGTGATCCCACTGTGGAGAGGGAGTGGA
 
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rJMSF022J14+          TACTCGACAATGTTTGTGCAAGTACAGACACCGCACATCCTCATCACGGGTCTCGAGGAC
                      ____________________________________________________________
consensus             TACTCGACAATGTTTGTGCAAGTACAGACACCGCACATCCTCATCACGGGTCTCGAGGAC
 
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rJMSF022J14+          TACAAAGCAAGAGGAACACAAGCCGCCCCATACTTCACCATTTCTTATTACACAGAGTTT
                      ____________________________________________________________
consensus             TACAAAGCAAGAGGAACACAAGCCGCCCCATACTTCACCATTTCTTATTACACAGAGTTT
 
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rJMSF022J14+          GCGGAAAGCAAGGACCTGGTGCTTGTAAGGGGAGATATCGTCTTCACGAGCAAACTCACT
                      ____________________________________________________________
consensus             GCGGAAAGCAAGGACCTGGTGCTTGTAAGGGGAGATATCGTCTTCACGAGCAAACTCACT
 
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rJMSF022J14+          GATACCGAAGCGAAATGGCTATTGGAGACTGCACACTCTTTCTATCTGAACGATACCAGG
                      ____________________________________________________________
consensus             GATACCGAAGCGAAATGGCTATTGGAGACTGCACACTCTTTCTATCTGAACGATACCAGG
 
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rJMSF022J14+          TACAAACTCGTCGAACGCTTCAACAAAGAAACGAGGGACTTTGAGTTCGAGGATGTTTTG
                      ____________________________________________________________
consensus             TACAAACTCGTCGAACGCTTCAACAAAGAAACGAGGGACTTTGAGTTCGAGGATGTTTTG
 
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rJMSF022J14+          CGAGCGCTGGAAATGCCCATCTTGTAGGCGAAGCAAATGTGATAAAAATATTTCCCTGCG
                      ____________________________________________________________
consensus             CGAGCGCTGGAAATGCCCATCTTGTAGGCGAAGCAAATGTGATAAAAATATTTCCCTGCG
 
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rJMSF022J14+          AGCTCTGAGCCATTTGAAATAAGGCGAGTTCGGTTAGGTAGCTGCCAAGGTTGCCTGCAA
                      ____________________________________________________________
consensus             AGCTCTGAGCCATTTGAAATAAGGCGAGTTCGGTTAGGTAGCTGCCAAGGTTGCCTGCAA
 
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rJMSF022J14+          CTTGAAGATGCAGTCTTAGATTATCCACAATGTTTCATGGGAGGGACAATCTCTGAAATG
                      ____________________________________________________________
consensus             CTTGAAGATGCAGTCTTAGATTATCCACAATGTTTCATGGGAGGGACAATCTCTGAAATG
 
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rJMSF022J14+          CCTTCAAAATCCTTCAAGGCTTGAGTTTATTAACTGTATTCATGGCATTAGTGGAACTTG
                      ____________________________________________________________
consensus             CCTTCAAAATCCTTCAAGGCTTGAGTTTATTAACTGTATTCATGGCATTAGTGGAACTTG