Contig 012609:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF022F01Sequence690012609 (4)gb|AFK48298.1|5e-122unknown [Medicago truncatula]650012609 (4)emb|CAI84890.1|5e-31putative Rho GTPase [Medicago sativa subsp. x varia]
JMSF050C22Sequence677012609 (4)ref|NP_001290012.1|5e-118rac-like GTP-binding protein RHO1 [Beta vulgaris subsp. vulgaris] ref|XP_0106798756012609 (4)gb|AFK48298.1|1e-49unknown [Medicago truncatula]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF050C22- GAGGCAATCCATAAGAGTATAGTTTCGGCGGGCTAAGTCGTC
                      ____________________________________________________________
consensus GAGGCAATCCATAAGAGTATAGTTTCGGCGGGCTAAGTCGTC
 
. : . : . : . : . : . :
JMSF050C22- CGGTAATTCAGCTGCGAACGATTCAACGGCAATATTTTCCGGCGAGAAGGTTACGTAAGT
                      ____________________________________________________________
consensus CGGTAATTCAGCTGCGAACGATTCAACGGCAATATTTTCCGGCGAGAAGGTTACGTAAGT
 
. : . : . : . : . : . :
JMSF050C22- CTTCTGAAGACGTAGAAGAAGATCTGAGGCCTTCAGAATGAGCGCGTCCAGGTTTATCAA
JMSF022F01- GAAGATCTGAGGCCTTCAGAATGAGCGCGTCCAGGTTTATCAA
                      ____________________________________________________________
consensus CTTCTGAAGACGTAGAAGAAGATCTGAGGCCTTCAGAATGAGCGCGTCCAGGTTTATCAA
 
. : . : . : . : . : . :
JMSF050C22- GTGTGTCACGGTGGGAGATGGTGCTGTTGGCAAGACTTGCCTCTTGATTTCCTACACCAG
JMSF022F01- GTGTGTCACGGTGGGAGATGGTGCTGTTGGCAAGACTTGCCTCTTGATTTCCTACACCAG
                      ____________________________________________________________
consensus GTGTGTCACGGTGGGAGATGGTGCTGTTGGCAAGACTTGCCTCTTGATTTCCTACACCAG
 
. : . : . : . : . : . :
JMSF050C22- CAACACTTTCCCCACGGATTACGTTCCAACTGTATTTGACAATTTCAGTGCCAACGTGGT
JMSF022F01- CAACACTTTCCCCACGGATTACGTTCCAACTGTATTTGACAATTTCAGTGCCAACGTGGT
                      ____________________________________________________________
consensus CAACACTTTCCCCACGGATTACGTTCCAACTGTATTTGACAATTTCAGTGCCAACGTGGT
 
. : . : . : . : . : . :
JMSF050C22- TGTCAATGGGGCTACTGTGAACCTTGGGTTGTGGGATACTGCTGGACAGGAGGATTATAA
JMSF022F01- TGTCAATGGGGCTACTGTGAACCTTGGGTTGTGGGATACTGCTGGACAGGAGGATTATAA
                      ____________________________________________________________
consensus TGTCAATGGGGCTACTGTGAACCTTGGGTTGTGGGATACTGCTGGACAGGAGGATTATAA
 
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JMSF050C22- CAGATTAAGACCACTGAGTTACCGTGGAGCTGATGTGTTCATTTTGGCATTTTCTCTCAT
JMSF022F01- CAGATTAAGACCACTGAGTTACCGTGGAGCTGATGTGTTCATTTTGGCATTTTCTCTCAT
rJMSF050C22+ TTTCTCTCAT
                      ____________________________________________________________
consensus CAGATTAAGACCACTGAGTTACCGTGGAGCTGATGTGTTCATTTTGGCATTTTCTCTCAT
 
. : . : . : . : . : . :
JMSF050C22- TAGTAAGGCCAGCTATGAAAATGTTTCCAAAAAGTGGATCCCTGAGTTGAAACATTATGC
JMSF022F01- TAGTAAGGCCAGCTATGAAAATGTTTCCAAAAAGTGGATCCCTGAGTTGAAACATTATGC
rJMSF050C22+ TAGTAAGGCCAGCTATGAAAATGTTTCCAAAAAGTGGATCCCTGAGTTGAAACATTATGC
                      ____________________________________________________________
consensus TAGTAAGGCCAGCTATGAAAATGTTTCCAAAAAGTGGATCCCTGAGTTGAAACATTATGC
 
. : . : . : . : . : . :
JMSF050C22- TCCTGGTGTCCTAATAGTTCTTGTTGGAACAAAACTTGATCTTCGAGATGATAAGCAGTT
JMSF022F01- TCCTGGTGTCCCAATAGTTCTTGTTGGAACAAAACTTGATCTTCGAGATGATAAGCAGTT
rJMSF050C22+ TCCTGGTGTCCTAATAGTTCTTGTTGGAACAAAACTTGATCTTCGAGATGATAAGCAGTT
rJMSF022F01+ CCAATAGTTCTTGTTGGAACAAAACTTGATCTTCGAGATGATAAGCAGTT
                      ____________________________________________________________
consensus TCCTGGTGTCCTAATAGTTCTTGTTGGAACAAAACTTGATCTTCGAGATGATAAGCAGTT
 
. : . : . : . : . : . :
JMSF050C22- CTTTGTAGACCATCCTGGTGCTGTGCCAATAACTACTGCTCAGGGGGAGGAACTGAGGAA
JMSF022F01- CTTTGTAGACCATCCTGGTGCTGTGCCAATAACTACTGCTCAGGGGGAGGAACTGAGGAA
rJMSF050C22+ CTTTGTAGACCATCCTGGTGCTGTGCCAATAACTACTGCTCAGGGGGAGGAACTGAGGAA
rJMSF022F01+ CTTTGTAGACCATCCTGGTGCTGTGCCAATAACTACTGCTCAGGGGGAGGAACTGAGGAA
                      ____________________________________________________________
consensus CTTTGTAGACCATCCTGGTGCTGTGCCAATAACTACTGCTCAGGGGGAGGAACTGAGGAA
 
. : . : . : . : . : . :
JMSF050C22- ATTGATTGATGCGCCTGCCTACATTGAATGTAGTTCAAAGTCACAGCAGAATGTGAAATC
JMSF022F01- ATTGATTGATGCGCCTGCCTACATTGAATGTAGTTCAAAGTCACAGCAGAATGTGAAATC
rJMSF050C22+ ATTGATTGATGCGCCTGCCTACATTGAATGTAGTTCAAAGTCACAGCAGAATGTGAAATC
rJMSF022F01+ ATTGATTGATGCGCCTGCCTACATTGAATGTAGTTCAAAGTCACAGCAGAATGTGAAATC
                      ____________________________________________________________
consensus ATTGATTGATGCGCCTGCCTACATTGAATGTAGTTCAAAGTCACAGCAGAATGTGAAATC
 
. : . : . : . : . : . :
JMSF050C22- TGTGTTTGATGCTGCCATTAAAGTTGTGCTGGCGC
JMSF022F01- TGTGTTTGATGCTGCCATTAAAGTTGTGCTGGCGCCACCCAAGGCGAA
rJMSF050C22+ TGTGTTTGATGCTGCCATTAAAGTTGTGCTGGCGCCACCCAAGGCGAAGAAAAAGAAGGG
rJMSF022F01+ TGTGTTTGATGCTGCCATTAAAGTTGTGCTGGCGCCACCCAAGGCGAAGAAAAAGAAGGG
                      ____________________________________________________________
consensus TGTGTTTGATGCTGCCATTAAAGTTGTGCTGGCGCCACCCAAGGCGAAGAAAAAGAAGGG
 
. : . : . : . : . : . :
rJMSF050C22+ AAAAACTCAGAAGGCGTGCTCCATTTTGTGAATGACATAAATAGTTCCATTTCAGGGATT
rJMSF022F01+ AAAAACTCAGAAGGCGTGCTCCATTTTGTGAATGACATAAATAGTTCCATTTCAGGGATT
                      ____________________________________________________________
consensus AAAAACTCAGAAGGCGTGCTCCATTTTGTGAATGACATAAATAGTTCCATTTCAGGGATT
 
. : . : . : . : . : . :
rJMSF050C22+ CCACTTACTACTGCCATTCTCTTTGTATCCCTCCTTCATTTCCATTTCTCTTTCCTTTTG
rJMSF022F01+ CCACTTACTACTGCCATTCTCTTTGTATCCCTCCTTCATTTCCATTTCTCTTTCCTTTTG
                      ____________________________________________________________
consensus CCACTTACTACTGCCATTCTCTTTGTATCCCTCCTTCATTTCCATTTCTCTTTCCTTTTG
 
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rJMSF050C22+ TTTCATCGAGGATGGATCGGAGGTCCTCTCACCGCATGTCAGATGACGCTACTAATGATC
rJMSF022F01+ TTTCATCGAGGATGGATCGGAGGTCCTCTCACCGCATGTCAGATGACGCTACTAATGATC
                      ____________________________________________________________
consensus TTTCATCGAGGATGGATCGGAGGTCCTCTCACCGCATGTCAGATGACGCTACTAATGATC
 
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rJMSF050C22+ CTAAGTGTCAAGGGTGGCTGCTGAGTGCTGCTGGCTGGCTGGCTAGGTTTATCCATGTTG
rJMSF022F01+ CTAAGTGTCAAGGGTGGCTGCTGAGTGCTGCTGGCTGGCTGGCTAGGTTTATCCATGTTG
                      ____________________________________________________________
consensus CTAAGTGTCAAGGGTGGCTGCTGAGTGCTGCTGGCTGGCTGGCTAGGTTTATCCATGTTG
 
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rJMSF050C22+ CCTCTTGTAGGCCACTCAATTGTGCCCTCTCCATTTTGATTTGCTTTATGATTCAATGAC
rJMSF022F01+ CCTCTTGTAGGCCACTCAATTGTGCCCTCTCCATTTTGATTTGCTTTATGATTCAATGAC
                      ____________________________________________________________
consensus CCTCTTGTAGGCCACTCAATTGTGCCCTCTCCATTTTGATTTGCTTTATGATTCAATGAC
 
. : . : . : . : . : . :
rJMSF050C22+ ACAAAACATTTAGGGAAACAAAACAAATATGCCCGCAGCGATGTTGCCTTTTATATTTGT
rJMSF022F01+ ACAAAACATTTAGGGAAACAAAACAAATATGCCCGCAGCGATGTTGCCTTTTATATTTGT
                      ____________________________________________________________
consensus ACAAAACATTTAGGGAAACAAAACAAATATGCCCGCAGCGATGTTGCCTTTTATATTTGT
 
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rJMSF050C22+ TGCTTTCTATTCTAAATTTGTCAAGTTCATTTTATAGTCAATTTGTAGGTGGT
rJMSF022F01+ TGCTTTCTATTCTAAATTTGTCAAGTTCATTTTATAGTCAATTTGTAGGTGGTTGCTATC
                      ____________________________________________________________
consensus TGCTTTCTATTCTAAATTTGTCAAGTTCATTTTATAGTCAATTTGTAGGTGGTTGCTATC