Contig 012608:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF023P13Sequence687012608 (5)ref|XP_004143832.1|2e-28PREDICTED: TMV resistance protein N-like [Cucumis sativus]893012608 (5)ref|XP_004143832.1|2e-11PREDICTED: TMV resistance protein N-like [Cucumis sativus]
JMFS091D11Sequence628012608 (5)ref|XP_004143832.1|5e-22PREDICTED: TMV resistance protein N-like [Cucumis sativus]
JMSF022C14Sequence793012608 (5)ref|XP_004143832.1|1e-31PREDICTED: TMV resistance protein N-like [Cucumis sativus]866012608 (5)ref|XP_004143832.1|2e-18PREDICTED: TMV resistance protein N-like [Cucumis sativus]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF022C14- TATTANACCTGGTTAAGCTGGGAAGC
                      ____________________________________________________________
consensus TATTANACCTGGTTAAGCTGGGAAGC
 
. : . : . : . : . : . :
rJMSF022C14- TTTTCAAGGTTACTACATCCATCAAAAATCAAGTCCACAAGGTTTGTATGATTTCCAAAA
                      ____________________________________________________________
consensus TTTTCAAGGTTACTACATCCATCAAAAATCAAGTCCACAAGGTTTGTATGATTTCCAAAA
 
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JMFF023P13+ TTCAATTTCTCACACTTGGAAAGCACTAAATATTTCAAATTGGGC
rJMSF022C14- GATGAGTAGATCTCTTTCAATTTCTCATACTTTGAAAGGTCTAGATATTTCAAATTTGGC
                      ____________________________________________________________
consensus GATGAGTAGATCTCTTTCAATTTCTCATACTTTGAAAGGTCTAGATATTTCAAATTTGGC
 
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JMFF023P13+ ATCATAGCAAAATTTGGTGTTTCAAACAAAGAGCTACAATTTCTAATATCCAAACGGGTA
rJMSF022C14- ATCATAACAAAATTTGGTGTTTCTAACAAAGAGCTACNATTTCAAAGATCCAAATCGGTA
                      ____________________________________________________________
consensus ATCATAGCAAAATTTGGTGTTTCTAACAAAGAGCTACAATTTCTAATATCCAAATGGGTA
 
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rJMFF023P13- CCTGGTTAAAGTTGAAAAGCTTTTCAAGGTTACAACATCCATCAAAA
JMFF023P13+ ATGCTCTTTATTTCCTGGTTAAAGCTGGGAAGCCTTTCATGGTTACTACATCCATCAAAA
rJMSF022C14- ACGCTCTTCATTTCCTGGTTAAAGTTGAAAAGCTTTTCAAGGTTACAACATCCATCAGAA
                      ____________________________________________________________
consensus ATGCTCTTTATTTCCTGGTTAAAGTTGAAAAGCTTTTCAAGGTTACAACATCCATCAAAA
 
. : . : . : . : . : . :
rJMFF023P13- ACCAATTCCATAAGTTCCNAAANATTTTGCAAAAATGGGNGGAACTCTTTCAATTTTCTC
JMFF023P13+ ACCAATTTCACAAATTCCGTTAAATTTCCCAAAGATGGGTGGATCTCTTTCAA-TTTCTC
rJMSF022C14- ACCAATTCCATAAGTTCCGAAAGATTTTGCAAAAATGGGTGGAACTCTTTCAATTTTCTC
                      ____________________________________________________________
consensus ACCAATTCCATAAGTTCCGAAAGATTTTGCAAAAATGGGTGGAACTCTTTCAATTTTCTC
 
. : . : . : . : . : . :
rJMFF023P13- ACACTTTGGAAGTTGTAAGTATTCCAAATTTGGCATCATANCAAAATTTGGAGTTTCTAA
JMSF022C14+ TATTTCAAATTNGGCATCATAGCAAAATTNGGCGTTTCTAA
JMFS091D11+ TATTCCAAATTTGTCATCATAGCAAAATTTGGTGTTTCTAA
JMFF023P13+ ACAGTTTGAAAGCTCTAAATATTTCAAATTTGGCATCATAGCAAAATTTTGTGTTTCTAA
rJMSF022C14- ACACTTTGGAAGTTGTAAGTATTCCAAATTTGGCATCATAGCAAAATTTGGAGTTTCTAA
                      ____________________________________________________________
consensus ACACTTTGGAAGTTGTAAGTATTCCAAATTTGGCATCATAGCAAAATTTGGTGTTTCTAA
 
. : . : . : . : . : . :
rJMFF023P13- CAAANAGCTACAATTTCAAANATCCAATCNGGAAANGTTCTTCATTTCCTGGTTAAAGCT
JMSF022C14+ CAAAGAGCTACAATTTTTAATATCCAAGCGGATAATGCTCTTTATTTCCTGGTTAAAGTT
JMFS091D11+ CAACGAGCTACAATTTCAAAGATCCAAACTGGAAATGTTTTTTATTTCCTGATCAAAGCT
JMFF023P13+ CAAAGAGCTACAATTTTTAATATCCAAACGGGTAATGCTCTTTATTTCCTGGTTAAAGCT
rJMSF022C14- CAAAGAGCTACAATTTCAAAGATCCAATCTGGTAATGTTCTTCATTTCCTGGTTNAAGCT
                      ____________________________________________________________
consensus CAAAGAGCTACAATTTCAAAGATCCAATCTGGTAATGTTCTTTATTTCCTGGTTAAAGCT
 
. : . : . : . : . : . :
rJMFF023P13- GAAAAGCTTTTCAAGGTTACTACATCCATCAAAAACCAATTCCATAAGTTCCNANANATT
JMSF022C14+ GGGAAGCTTTTCAAGGTTACTACATCCATCAAAATCCAATTCCACAAGTTCCGTAAGATT
JMFS091D11+ GGGAAGCTTTTCAAGGTTACTACATCCATCAAAAACCAATTCCACAAGTTTCGTTAGATT
JMFF023P13+ GGGAAGCTTTTCATGGTTACTACATCCATCAAAAACCAATTTCACAAGTTCTGTAAGATT
rJMSF022C14- GAAAAACTTTTCAAGGTTACTACATCCATCAGAAACCAATTCCATAAGTTCCGAGAGATT
                      ____________________________________________________________
consensus GGGAAGCTTTTCAAGGTTACTACATCCATCAAAAACCAATTCCACAAGTTCCGTAAGATT
 
. : . : . : . : . : . :
rJMFF023P13- TTACAAAAATGGGNGGAACTCTTTCAATTTTCTCACACTTTGGAAGTTGTAAGNATTCCA
JMSF022C14+ TCCCATAGATTGGTGTATCTCTTTCAA-TTTCTCACACCCTGAAAGTAGTAAATATTCCA
JMFS091D11+ TGCCATAGATGGGTTGATCTCTTTCAA-TTTCTCACAATTTGAAAGTTGCAAGTATTCCA
JMFF023P13+ TCCCAAAGATGGGTGGATGTCTTTCAA-TTTCTCACACTTTGAAAGTAGTAAATATTCCA
rJMSF022C14- TTACAAAAATGGGTGGAACTCTTTCAATTTTCTCACACTTTGGAAGTTGTAAGTATTCCA
                      ____________________________________________________________
consensus TTCCAAAGATGGGTGGATCTCTTTCAA-TTTCTCACACTTTGAAAGTTGTAAGTATTCCA
 
. : . : . : . : . : . :
rJMFF023P13- AATTTGTCATCATANCAAAATTTGGGGTTTCTAACAACGAGCTACAATTTCAAAGATCCA
JMSF022C14+ AATTTGGCATCATAGCAAAATTTGGCGTTTCTAATAAAGAGCCACAATTTCTAATATCCA
JMFS091D11+ AATTTGGCATCATAGCAAAATTTGGTGTTTCTAACAATGAGCAACAATTTCTAATATCCA
JMFF023P13+ AATTTGGCATCATAGCAAAATTTGGTGTTTCTAACAAAGAGCTACAATTTC
rJMSF022C14- AATTTGTCATCATAGCAAAATTTGGTGTTTCTAACAACGAGCTACAATTTCAAAGATCCN
                      ____________________________________________________________
consensus AATTTGGCATCATAGCAAAATTTGGTGTTTCTAACAACGAGCTACAATTTCTAATATCCA
 
. : . : . : . : . : . :
rJMFF023P13- AACTGGAAATGTTTTTTATTTCCTGATCAAAGCTGGGAAGCTTTTCAAGGTTACTACATC
JMSF022C14+ AGCGGCTAATGCTCTCTATTTCCTGGTTAAAGCTGGGAAGCTTTTCAAGGTTACTACATC
JMFS091D11+ AACGGGAAACGCTCTTTATTTCCTGGTTAAAAATGGGAAGCATTTCAAGGTTACTACATC
rJMSF022C14- AACTGGAAATGTTTTTTATTTCCTGATCNAAGCTGGGAAGCTTTTCAAGGTTACTACATC
                      ____________________________________________________________
consensus AACTGGAAATGTTTTTTATTTCCTGGTTAAAGCTGGGAAGCTTTTCAAGGTTACTACATC
 
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rJMFF023P13- CATCAAAAACCAATTCCACAAGTTTCGTTANATTTGCCATANATGGGTTGATCTCTTTCA
JMSF022C14+ CATCAAAATCCAATTCCACAAGTTCCGTAAGATTTCCCAAAGATGAGTGGATCTCTTTCA
JMFS091D11+ CATCAAAAACCAATTCCACAAGTTCCGTTAGATTTCCCAAAGATGGGTGGATCTCTTTCA
rJMSF022C14- CATCAAAAACCAATTCCNCAAGTTTCGTTAGATTNGCCATAGATGGGTTGATCTCTTTCA
                      ____________________________________________________________
consensus CATCAAAAACCAATTCCACAAGTTTCGTTAGATTTGCCATAGATGGGTTGATCTCTTTCA
 
. : . : . : . : . : . :
rJMFF023P13- ATTTCTCNCAATTTGAAAGTTGCAAGTATTCCAAATTTGGCATCATA
JMSF022C14+ ATTTCTCACACTTTGAAAGTAGTAAATATTCCAAATTTGGCATCATA
JMFS091D11+ ATTCCTCACACTTTGAAAGGTCTAAATATTTCAAATTTGGCATCATA
rJMSF022C14- ATTCCTCACAATTTGAAAGTTGCAAGTATTCCAAATTTGGCATCATAGCAAAATTNGGNG
                      ____________________________________________________________
consensus ATTTCTCACACTTTGAAAGTTGTAAGTATTCCAAATTTGGCATCATAGCAAAATTNGGNG
 
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rJMSF022C14- NTTCNAACAATGAGCAACANTTTNAAAATCCAACGGGAACGCTCTTTATTCCNGGTNAAA
                      ____________________________________________________________
consensus NTTCNAACAATGAGCAACANTTTNAAAATCCAACGGGAACGCTCTTTATTCCNGGTNAAA