Contig 012603:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002K20Sequence354002051 (2)743012603 (3)
JMSF018J21Sequence264012603 (3)
JMSF021H09Sequence664002051 (2)763012603 (3)ref|XP_006356248.1|103PREDICTED: uncharacterized protein LOC102579340 [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF002K20+                   ATCATCAGTCATGGGCATATGATCTGCTTGNTTTATGCTGTCACTTGCCAT
                      ____________________________________________________________
consensus                      ATCATCAGTCATGGGCATATGATCTGCTTGNTTTATGCTGTCACTTGCCAT
 
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rJMSF002K20+          TCTACATTGAGATATGATGAATATGATATTCTTCTGTGTTTGTGGGAGGACCACCTGTAG
                      ____________________________________________________________
consensus             TCTACATTGAGATATGATGAATATGATATTCTTCTGTGTTTGTGGGAGGACCACCTGTAG
 
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rJMSF002K20+          AAGGAATATCTGCTCTTCAACTTCCTCAGGTACCACTATTGGATGCCACTCCAACAATGA
                      ____________________________________________________________
consensus             AAGGAATATCTGCTCTTCAACTTCCTCAGGTACCACTATTGGATGCCACTCCAACAATGA
 
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rJMSF002K20+          ATAACAATAACCTGGAACCTGATGGGTCATTGAAGGCATTAAACAATCGCAATCAGGCTG
                      ____________________________________________________________
consensus             ATAACAATAACCTGGAACCTGATGGGTCATTGAAGGCATTAAACAATCGCAATCAGGCTG
 
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rJMSF002K20+          AACAGCTAAAAAGATACTGATGCACCGTCTGATCCCATGCATAAAAATACAAAAGAGTTG
                      ____________________________________________________________
consensus             AACAGCTAAAAAGATACTGATGCACCGTCTGATCCCATGCATAAAAATACAAAAGAGTTG
 
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rJMSF002K20+          CAACAACAAATGGACCTGAGTGCACTGTCAGAGAAGATAAGACCTGATAAGGGACATGAT
                      ____________________________________________________________
consensus             CAACAACAAATGGACCTGAGTGCACTGTCAGAGAAGATAAGACCTGATAAGGGACATGAT
 
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rJMSF002K20+          TCTTTTGGGATGAACAAAAGCAAACGCTCTGATGAAGAACCTACTATCAAGAAGGAACAA
                      ____________________________________________________________
consensus             TCTTTTGGGATGAACAAAAGCAAACGCTCTGATGAAGAACCTACTATCAAGAAGGAACAA
 
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rJMSF002K20+          GAGAAGAAATCTTGAAGTTCATTGGACATTAATGCAACTTCAATTGTGTTAGCTTTGCCA
rJMSF021H09+                            TCATTGGNCATTAATGCAACTTCAATTGTGTTAACCTTGCCA
                      ____________________________________________________________
consensus             GAGAAGAAATCTTGAAGTTCATTGGACATTAATGCAACTTCAATTGTGTTAGCTTTGCCA
 
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rJMSF002K20+          GCTGTAACTGGAAAGGAGTCTGTGACTAAGCCTGATGTGTTAGCCCCCAGCAGCACAAAA
rJMSF021H09+          GCTGTAACTGGAAAGGAGTCTGTGACTAAGCCTGATGTGTTAGCCCCCAGCAGCACAAAA
                      ____________________________________________________________
consensus             GCTGTAACTGGAAAGGAGTCTGTGACTAAGCCTGATGTGTTAGCCCCCAGCAGCACAAAA
 
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rJMSF002K20+          AGTCCTTGCAAAAGGGGCCAACCAAAGAAGAATAAGACGGATCTCACCGTGCAAAAGAGA
rJMSF021H09+          AGTCCTTGCAAAAGGGGCCAACCAAAGAAGAATCAGACAGATCTCACCGTGCAAAAGAGA
                      ____________________________________________________________
consensus             AGTCCTTGCAAAAGGGGCCAACCAAAGAAGAATCAGACGGATCTCACCGTGCAAAAGAGA
 
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rJMSF002K20+          TATGAAGGGACTAGGTCTGCCCAGAGAAAACTTAAAGAAAAGG                 
rJMSF021H09+          TATGAAGGGACTAGGTCTGCCCAGAGAAAACTTAAAGAAAAGGATTCTAAAAAGCTTCAT
                      ____________________________________________________________
consensus             TATGAAGGGACTAGGTCTGCCCAGAGAAAACTTAAAGAAAAGGATTCTAAAAAGCTTCAT
 
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rJMSF021H09+          ACTATTAAAGATTACGGAAAAGAGTTGGTAGGGGCTAAAGTCAAAGTCTGGTGGCCCCGG
                      ____________________________________________________________
consensus             ACTATTAAAGATTACGGAAAAGAGTTGGTAGGGGCTAAAGTCAAAGTCTGGTGGCCCCGG
 
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rJMSF021H09+          GATAGAAGGTTTTATGAGGGAGTGATTTCTTCTTTTAACCCTAAGACGGAAAAGCACAAG
                      ____________________________________________________________
consensus             GATAGAAGGTTTTATGAGGGAGTGATTTCTTCTTTTAACCCTAAGACGGAAAAGCACAAG
 
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rJMSF021H09+          GTCATATACATTGATGATGATGTAGAAATCTTGAATCTCAGATGTGAGCGCTGGGAATTG
                      ____________________________________________________________
consensus             GTCATATACATTGATGATGATGTAGAAATCTTGAATCTCAGATGTGAGCGCTGGGAATTG
 
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rJMSF021H09+          CTTGAAGAGGTTCCAGTCAAAGAAGTGAGTTAAATCCTACGTTGTACATTATCTAGTTAG
                      ____________________________________________________________
consensus             CTTGAAGAGGTTCCAGTCAAAGAAGTGAGTTAAATCCTACGTTGTACATTATCTAGTTAG
 
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rJMSF018J21+                       CTTGAAGAGNTTCCAGTCAACGAAGGNCATGTNACGGACTGCCTTTG
rJMSF021H09+          CAAGCTATGATTTCTTGAAGAGGTTCCAGTCAAAGAAGGGCGTGTAACTGACTGACTTTG
                      ____________________________________________________________
consensus             CAAGCTATGATTTCTTGAAGAGGTTCCAGTCAACGAAGGGCGTGTAACTGACTGCCTTTG
 
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rJMSF018J21+          CTTTCTGATGGAGTAAAGAGGAAGAGGAAGGGAGAT                        
rJMSF021H09+          CTTTCTGATTGAGTAAAGAGGAAGAGGAAGGGAGATAAGGACGCCGTCGTTTTACTTTTT
                      ____________________________________________________________
consensus             CTTTCTGATTGAGTAAAGAGGAAGAGGAAGGGAGATAAGGACGCCGTCGTTTTACTTTTT
 
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rJMSF021H09+          TTAAAAAATCATTTTTAATTGCCGTTAGTTACGTAAACATATGTTCATAATTTTATAATT
                      ____________________________________________________________
consensus             TTAAAAAATCATTTTTAATTGCCGTTAGTTACGTAAACATATGTTCATAATTTTATAATT
 
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rJMSF021H09+          TCACATTCTGAATGTATAGTTATGAAGTTATGGATGTGTAGTTATGCAATTCTGAATGTA
                      ____________________________________________________________
consensus             TCACATTCTGAATGTATAGTTATGAAGTTATGGATGTGTAGTTATGCAATTCTGAATGTA
 
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rJMSF021H09+          TAGTTATGAAGTTATGGATGTGTAGTTATGCAATTCTGAATGTATAGTTATGAAGTTATG
                      ____________________________________________________________
consensus             TAGTTATGAAGTTATGGATGTGTAGTTATGCAATTCTGAATGTATAGTTATGAAGTTATG