Contig 012599:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF020N24Sequence675012599 (2)ref|XP_011080588.1|9e-84PREDICTED: RPA-interacting protein B [Sesamum indicum]737012599 (2)ref|XP_011080588.1|2e-90PREDICTED: RPA-interacting protein B [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF020N24- GGCTCTCTCTCTTTCCCTCTCCCTCTCCC
                      ____________________________________________________________
consensus GGCTCTCTCTCTTTCCCTCTCCCTCTCCC
 
. : . : . : . : . : . :
JMSF020N24- TCCGCCGTAGTCCGTTGACGGAAAGAACAACTGGCAATTATAATCGCCGAGAAATGGGTG
                      ____________________________________________________________
consensus TCCGCCGTAGTCCGTTGACGGAAAGAACAACTGGCAATTATAATCGCCGAGAAATGGGTG
 
. : . : . : . : . : . :
JMSF020N24- GAGCTGAGAAAAAGAATGTCCACAATCGAGAATCTCTCAAAGCTCGAAGTTCGTTCAATA
                      ____________________________________________________________
consensus GAGCTGAGAAAAAGAATGTCCACAATCGAGAATCTCTCAAAGCTCGAAGTTCGTTCAATA
 
. : . : . : . : . : . :
JMSF020N24- ATTATCCCAAGTGGAAGCAAAAGCTCAGAGAAAATTGTTACACAAGGGTACAGGAGGATC
                      ____________________________________________________________
consensus ATTATCCCAAGTGGAAGCAAAAGCTCAGAGAAAATTGTTACACAAGGGTACAGGAGGATC
 
. : . : . : . : . : . :
JMSF020N24- GAACCCGCCTGCTCTGGAAATTGAGATCAACTCAGGCCAAAAACCACCAGGAGATTGTCA
rJMSF020N24+ CCACCAGGAGATTGTCA
                      ____________________________________________________________
consensus GAACCCGCCTGCTCTGGAAATTGAGATCAACTCAGGCCAAAAACCACCAGGAGATTGTCA
 
. : . : . : . : . : . :
JMSF020N24- ATTCATCCTTCCGGGACATAGTATCTGATGAATTGCAAAAAATAAAGGTCCTGATTGAGG
rJMSF020N24+ ATTCATCCTTCCGGGACATAGTATCTGATGAATTGCAAAAAATAAAGGTCCTGATTGAGG
                      ____________________________________________________________
consensus ATTCATCCTTCCGGGACATAGTATCTGATGAATTGCAAAAAATAAAGGTCCTGATTGAGG
 
. : . : . : . : . : . :
JMSF020N24- ACAATGGTACTTCTAAAATTGCCCCCGAGACTGATGAGATTATCTGGGAATATGATGGTC
rJMSF020N24+ ACAATGGTACTTCTAAAATTGCCCCCGAGACTGATGAGATTATCTGGGAATATGATGGTC
                      ____________________________________________________________
consensus ACAATGGTACTTCTAAAATTGCCCCCGAGACTGATGAGATTATCTGGGAATATGATGGTC
 
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JMSF020N24- TTCACACAGCATATCAAGGTGATTGTGAGGAAATGTTGTTGGAAATGCAAAGGATATTTT
rJMSF020N24+ TTCACACAGCATATCAAGGTGATTGTGAGGAAATGTTGTTGGAAATGCAAAGGATATTTT
                      ____________________________________________________________
consensus TTCACACAGCATATCAAGGTGATTGTGAGGAAATGTTGTTGGAAATGCAAAGGATATTTT
 
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JMSF020N24- ATGAGGATCTTCGGGTGGAAGAAACAAGAAAAGAACAAGAAGGATCTAGTACAAGTTGGG
rJMSF020N24+ ATGAGGATCTTCGGGTGGAAGAAACAAGAAAAGAACAAGAAGGATCTAGTACAAGTTGGG
                      ____________________________________________________________
consensus ATGAGGATCTTCGGGTGGAAGAAACAAGAAAAGAACAAGAAGGATCTAGTACAAGTTGGG
 
. : . : . : . : . : . :
JMSF020N24- AAGATGAAGAAGATGATTTCCTAGCTCGTGCGGTCTATGATCACATGAATCTGAATGATG
rJMSF020N24+ AAGATGAAGAAGATGATTTCCTAGCTCGTGCGGTCTATGATCACATGAATCTGAATGATG
                      ____________________________________________________________
consensus AAGATGAAGAAGATGATTTCCTAGCTCGTGCGGTCTATGATCACATGAATCTGAATGATG
 
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JMSF020N24- AGCAGGTGGCCAAGGAGGTTTGGTGTCCCATCTGCAAGCATGGAGAGTTGAAAGAGAACC
rJMSF020N24+ AGCAGGTGGCCAAGGAGGTTTGGTGTCCCATCTGCAAGCATGGAGAGTTGAAAGAGAACC
                      ____________________________________________________________
consensus AGCAGGTGGCCAAGGAGGTTTGGTGTCCCATCTGCAAGCATGGAGAGTTGAAAGAGAACC
 
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JMSF020N24- GCCATCTAATTGGTTGCACTCAGTGTGGTGTTACACTTGACAGAGG
rJMSF020N24+ GCCATCTAATTGGTTGCACTCAGTGTGGTGTTACACTTGACAGAGGCGACGAGGTTAATC
                      ____________________________________________________________
consensus GCCATCTAATTGGTTGCACTCAGTGTGGTGTTACACTTGACAGAGGCGACGAGGTTAATC
 
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rJMSF020N24+ TGGAGGTACTCCGGAACAGGTTAGCTGAAGCTCATTCTGAGCATCTGGATAGAGGTTGCA
                      ____________________________________________________________
consensus TGGAGGTACTCCGGAACAGGTTAGCTGAAGCTCATTCTGAGCATCTGGATAGAGGTTGCA
 
. : . : . : . : . : . :
rJMSF020N24+ GATTAAAACCTGAATTCTGCCTTGAAACTAAATTCGGACTGTCTGCACTTTATATCAGGT
                      ____________________________________________________________
consensus GATTAAAACCTGAATTCTGCCTTGAAACTAAATTCGGACTGTCTGCACTTTATATCAGGT
 
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rJMSF020N24+ GTGAGCCCTGCAACACTTTTGAAATTGTAATTTAGTCACTTCAATCCTTCTCATTATATC
                      ____________________________________________________________
consensus GTGAGCCCTGCAACACTTTTGAAATTGTAATTTAGTCACTTCAATCCTTCTCATTATATC
 
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rJMSF020N24+ TCCCCATATATTACTATGGGGGTGTTTGGTAAATAGCTAATTAGCTATTAGCTAATTGGG
                      ____________________________________________________________
consensus TCCCCATATATTACTATGGGGGTGTTTGGTAAATAGCTAATTAGCTATTAGCTAATTGGG
 
. : . : . : . : . : . :
rJMSF020N24+ TTAGTGGGTTTGATTAGTTGATAGATTAGTTGATTGTAAAAAGATGTTTGGAAATTCGTG
                      ____________________________________________________________
consensus TTAGTGGGTTTGATTAGTTGATAGATTAGTTGATTGTAAAAAGATGTTTGGAAATTCGTG