Contig 012584:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018J11Sequence515013550 (2)ref|XP_002300673.2|1e-35hypothetical protein POPTR_0002s01580g [Populus trichocarpa] gb|EEE79946.2| hypo756012584 (2)
JMSF048N18Sequence698013550 (2)ref|XP_002510619.1|1e-81pseudouridylate synthase, putative [Ricinus communis] gb|EEF52806.1| pseudouridy759012584 (2)ref|XP_002510619.1|7e-19pseudouridylate synthase, putative [Ricinus communis] gb|EEF52806.1| pseudouridy

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF048N18+ ATAGC
                      ____________________________________________________________
consensus ATAGC
 
. : . : . : . : . : . :
rJMSF048N18+ AGAGGATTTCAAAATGAAGTATATATATTTTCATATTGCATCANCAGAGCACAAGGAAGG
                      ____________________________________________________________
consensus AGAGGATTTCAAAATGAAGTATATATATTTTCATATTGCATCANCAGAGCACAAGGAAGG
 
. : . : . : . : . : . :
rJMSF048N18+ AGTCATGGGTCTATGGCTACATTCTCTGAATTACCGTAATTACCCTGATCTACGTTTTTC
rJMSF018J11+ TCTGAATTACCGTAATTACCCTGATCTACGTTTTTC
                      ____________________________________________________________
consensus AGTCATGGGTCTATGGCTACATTCTCTGAATTACCGTAATTACCCTGATCTACGTTTTTC
 
. : . : . : . : . : . :
rJMSF048N18+ AAACTGTGATGAAACTACAGATGCAAAAAGCATACCTGATTCTCGCACTGTCAACAATGG
rJMSF018J11+ AAACTGTGATGAAACTACAGATGCAAAAAGCATACCTGATTCTCGCACTGTCAACAATGG
                      ____________________________________________________________
consensus AAACTGTGATGAAACTACAGATGCAAAAAGCATACCTGATTCTCGCACTGTCAACAATGG
 
. : . : . : . : . : . :
rJMSF048N18+ TGAGGCTCTGGATGCAGAAACTGTGGAATCTGCAAGTGCCAAAACAATTGAAACTGTGAA
rJMSF018J11+ TGAGGCTCTGGATGCAGAAACTGTGGAATCTGCAAGTGCCAAAACAATTGAAACTGTGAA
                      ____________________________________________________________
consensus TGAGGCTCTGGATGCAGAAACTGTGGAATCTGCAAGTGCCAAAACAATTGAAACTGTGAA
 
. : . : . : . : . : . :
rJMSF048N18+ GAACGATGAATCTACAATTGCCAAAACTACTGAAAGTAATGACATGGATCCATCGTGTGC
rJMSF018J11+ GAACGATGAATCTACAATTGCCAAAACTACTGAAAGTAATGACATGGATCCATCGTGTGC
                      ____________________________________________________________
consensus GAACGATGAATCTACAATTGCCAAAACTACTGAAAGTAATGACATGGATCCATCGTGTGC
 
. : . : . : . : . : . :
rJMSF048N18+ CATGAGTGAAGCTGATGCAAAAACTGTCGAAGCTGCAGACAATGCTGATTCATGTCCTGG
rJMSF018J11+ CATGAGTGAAGCTGATGCAAAAACTGTCGAAGCTGCAGACAATGCTGATTCATGTCCTGG
                      ____________________________________________________________
consensus CATGAGTGAAGCTGATGCAAAAACTGTCGAAGCTGCAGACAATGCTGATTCATGTCCTGG
 
. : . : . : . : . : . :
rJMSF048N18+ GAAGAACGACAAATCTGCAAGTACCAAAACTACTGAGGTTGATGCTCTGGATGCAAAAAC
rJMSF018J11+ GAAGAACGACAAATCTGCAAGTACCAAAACTACTGAGGTTGATGCTCTGGATGCAAAAAC
                      ____________________________________________________________
consensus GAAGAACGACAAATCTGCAAGTACCAAAACTACTGAGGTTGATGCTCTGGATGCAAAAAC
 
. : . : . : . : . : . :
rJMSF048N18+ TGTCGAAGATGCAGGCAATGCTGATTCGTGCCCTGGGAAGAACGACGAAACTGCAACTGC
rJMSF018J11+ TGTCGAAGATGCAGGCAATGCTGATTCGTGCCCTGGGAAGAACGACGAAACTGCAACTGC
                      ____________________________________________________________
consensus TGTCGAAGATGCAGGCAATGCTGATTCGTGCCCTGGGAAGAACGACGAAACTGCAACTGC
 
. : . : . : . : . : . :
rJMSF048N18+ CCTTTGAGGTTGATGCTCCGGATGCAAAAACTGTGGAAGCTGCAGAGAATACTGATTCGT
rJMSF018J11+ CCTTTGAGGTTGATGCTCCGGATGCAAAAACTGTGGAAGCTGCAGAGAATACTGATTCGT
                      ____________________________________________________________
consensus CCTTTGAGGTTGATGCTCCGGATGCAAAAACTGTGGAAGCTGCAGAGAATACTGATTCGT
 
. : . : . : . : . : . :
rJMSF048N18+ GTCCTGGGAAGAACGACGAATCTGCAAGTGCCAAAACCTACTTAAAGTAATGACATGACA
rJMSF018J11+ GTCCTGGGAAGAACGACGAATCTGCAAGTGCCAAAACCTACTTAAAGTAATGACATGACA
                      ____________________________________________________________
consensus GTCCTGGGAAGAACGACGAATCTGCAAGTGCCAAAACCTACTTAAAGTAATGACATGACA
 
. : . : . : . : . : . :
rJMSF048N18+ TATGTGAAAAGTGTTGCAGTTGAGGGCATGGCTGAGTGAGAAGACTGAAGACATATGCCT
rJMSF018J11+ TATGTGAAAAGTGTTGCAGTTGAGGGCATGGCTGAGTGAGAAGACTGAAGACATATGCCT
                      ____________________________________________________________
consensus TATGTGAAAAGTGTTGCAGTTGAGGGCATGGCTGAGTGAGAAGACTGAAGACATATGCCT
 
. : . : . : . : . : . :
rJMSF048N18+ CAAAATTTTCCATTTGATTTGATAGTTCTTAGTATTTTGCTTCTTGAAGATTTGCATGTG
rJMSF018J11+ CAAAATTTTCCATTTGATTTGATAGTTCTTAGTATTTTGCTTCTTGAAGATTTGCATGTG
                      ____________________________________________________________
consensus CAAAATTTTCCATTTGATTTGATAGTTCTTAGTATTTTGCTTCTTGAAGATTTGCATGTG
 
. : . : . : . : . : . :
rJMSF048N18+ AAGCAAACTTAGATATAACTTTCTTTGATAGAAC
rJMSF018J11+ AAGCAAACTTAGATATAACTTTCTTTGATAGAACTCATAGAAGTGAAGAAGAGATTTCAG
                      ____________________________________________________________
consensus AAGCAAACTTAGATATAACTTTCTTTGATAGAACTCATAGAAGTGAAGAAGAGATTTCAG
 
. : . : . : . : . : . :
rJMSF018J11+ TGATGGGTATTTTTTGTTTTTAATTTCTGTGTTTTGATTTGGATAAAGTTTTAATTTTTT
                      ____________________________________________________________
consensus TGATGGGTATTTTTTGTTTTTAATTTCTGTGTTTTGATTTGGATAAAGTTTTAATTTTTT