Contig 012580:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015H23Sequence282005025 (4)ref|XP_004228642.1|9e-35PREDICTED: histone-lysine N-methyltransferase setd3 [Solanum lycopersicum]846012580 (4)ref|XP_008221466.1|2e-102PREDICTED: histone-lysine N-methyltransferase setd3-like isoform X1 [Prunus mum
JMSF016P13Sequence455005025 (4)ref|XP_004228642.1|8e-70PREDICTED: histone-lysine N-methyltransferase setd3 [Solanum lycopersicum]740012580 (4)ref|XP_008221466.1|3e-89PREDICTED: histone-lysine N-methyltransferase setd3-like isoform X1 [Prunus mum
JMSF017N17Sequence444005025 (4)ref|XP_004228642.1|2e-67PREDICTED: histone-lysine N-methyltransferase setd3 [Solanum lycopersicum]754012580 (4)ref|XP_008221466.1|3e-89PREDICTED: histone-lysine N-methyltransferase setd3-like isoform X1 [Prunus mum
JMSF024H21Sequence666005025 (4)ref|XP_004228642.1|9e-118PREDICTED: histone-lysine N-methyltransferase setd3 [Solanum lycopersicum]804012580 (4)ref|XP_008221466.1|2e-116PREDICTED: histone-lysine N-methyltransferase setd3-like isoform X1 [Prunus mum

Alignment

This contig is upended


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rJMSF024H21+ TNATCACAGCTTCC
                      ____________________________________________________________
consensus TNATCACAGCTTCC
 
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rJMSF024H21+ ATCCAAATGCTGAAATCGTACAGGAACGTGAAGCAGGTGACGGGAAAATGCTCGTAAAGG
rJMSF015H23+ CGTAAAGG
                      ____________________________________________________________
consensus ATCCAAATGCTGAAATCGTACAGGAACGTGAAGCAGGTGACGGGAAAATGCTCGTAAAGG
 
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rJMSF024H21+ TGATTGCTGCAGAACATATCAAACGAAGCGATGCATTAGAACTTAACTATGGCTGTCTAA
rJMSF015H23+ TGATTGCTGCAGAACATATCCAACGGAGCGATGCA-TAGNACTTAACTATGGCTGTCTAA
                      ____________________________________________________________
consensus TGATTGCTGCAGAACATATCCAACGGAGCGATGCATTAGAACTTAACTATGGCTGTCTAA
 
. : . : . : . : . : . :
rJMSF024H21+ ATAACGATCTTTTTCTTCTTGATTATGGATTTGTCGTACCCTCCAATCCATATGACTGCA
rJMSF016P13+ GGATTTGTCGTACCCTCCAATCCATATGACTGCA
rJMSF015H23+ ATAACGATCTTTTTCTTCTTGATTATGGATTTGTCGTACCCTCCAATCCATATGACTGCA
rJMSF017N17+ GGATTTGTCGTACCCTCCAATCCATATGACTGCA
                      ____________________________________________________________
consensus ATAACGATCTTTTTCTTCTTGATTATGGATTTGTCGTACCCTCCAATCCATATGACTGCA
 
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rJMSF024H21+ TTGAACTCAGGTACGATCCCGCTCTTCTCGATGCTGCAAGTATGGCTGCTGGAGTTGAAT
rJMSF016P13+ TTGAACTCAGGTACGATCCCGCTCTTCTCGATGCTGCAAGTATGGCTGCTGGAGTTGAAT
rJMSF015H23+ TTGAACTCAGGTACGATCCCGCTCTTCTCGATGCTGCAAGTATGGCTGCTGGAGTTGAAT
rJMSF017N17+ TTGAACTCAGGTACGATCCCGCTCTTCTCGATGCTGCAAGTATGGCTGCTGGAGTTGAAT
                      ____________________________________________________________
consensus TTGAACTCAGGTACGATCCCGCTCTTCTCGATGCTGCAAGTATGGCTGCTGGAGTTGAAT
 
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rJMSF024H21+ CCCCGAACTTCTCTTCACCATCTCCTTGGCAGCGGGAGATTTTGTCCCAGCTAAATCTCG
rJMSF016P13+ CCCCGAACTTCTCTTCACCATCTCCTTGGCAGCGGGAGATTTTGTCCCAGCTAAATCTCG
rJMSF015H23+ CCCCGAACTTCTCTTCACCATCTCCTTGGCAGCGGGAGATTTTGTCCCAGCTAAATCTCG
rJMSF017N17+ CCCCGAACTTCTCTTCACCATCTCCTTGGCAGCGGGAGATTTTGTCCCAGCTAAATCTCG
                      ____________________________________________________________
consensus CCCCGAACTTCTCTTCACCATCTCCTTGGCAGCGGGAGATTTTGTCCCAGCTAAATCTCG
 
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rJMSF024H21+ ATGGCGAAAATCCTGATCTAAAGGTAACGATAGGAGGTCCCGAGCTCGTAGAGGGGCGTT
rJMSF016P13+ ATGGCGAAAATCCTGATCTAAAGGTAACGATAGGAGGTCCCGAGCTCGTAGAGGGGCGTT
rJMSF015H23+ ATGGCGAAAATCCTGATCTAAAGGTAACGATAGGAGGTCCCGAGCTTGTAGAGGGGCGTT
rJMSF017N17+ ATGGCGAAAATCCTGATCTGAAGGTAACGATAGGAGGTCCCGAGCTCGTAGAGGGGCGTT
                      ____________________________________________________________
consensus ATGGCGAAAATCCTGATCTAAAGGTAACGATAGGAGGTCCCGAGCTCGTAGAGGGGCGTT
 
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rJMSF024H21+ TGATGGCTGCATTACGAGCTTTCCTATCGAATGACATGGAGTCGGTCCGAAACCACAGCA
rJMSF016P13+ TGATGGCTGCATTACGAGCTTTCCTATCGAATGACATGGAGTCGGTCCGAAACCACAGCA
rJMSF015H23+ TGATGGCTGCATTACGAGCTTTCCTATCGAATGACATGGAGTCGGTCCGAAACCACAGCA
rJMSF017N17+ TGATGGCTGCATTACGAGCTTTCCTATCGAATGACATGGAGTCGGTCCGAAACCACAGCA
                      ____________________________________________________________
consensus TGATGGCTGCATTACGAGCTTTCCTATCGAATGACATGGAGTCGGTCCGAAACCACAGCA
 
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rJMSF024H21+ TGGACACGCTTAAGTCATTGTCGGTTGAACCTCAACCACCGCTTGGAACTGCAAACGAAG
rJMSF016P13+ TGGACACGCTTAAGTCATTGTCGGTTGAACCTCAACCACCGCTTGGAACTGCAAACGAAG
rJMSF015H23+ TGGACACGCTTAAGTCATTGTCGGTTGAACCTCAACCACCGCTTGGAACTGCAAACGAAG
rJMSF017N17+ TGGACACGCTTAAGTCATTGTCGGTTGAACCTCAACCACCGCTTGGAACTGCAAACGAAG
                      ____________________________________________________________
consensus TGGACACGCTTAAGTCATTGTCGGTTGAACCTCAACCACCGCTTGGAACTGCAAACGAAG
 
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rJMSF024H21+ TGGCTGCTCTCCGCACTGTCACCGCCTTGTGCGTGATTGCGCTTGGGCACTTCCCGACTA
rJMSF016P13+ TGGCTGCTCTCCGCACTGTCACCGCCTTGTGCGTGATTGCGCTTGGGCACTTCCCGACTA
rJMSF015H23+ TGGCTGCTCTCCGCACTGTCACCGCCTTGTGCGTGATTGCGCTTGGGCACTTCCCGACTA
rJMSF017N17+ TGGCTGCTCTCCGCACTGTCACCGCCTTGTGCGTGATTGCGCTTGGGCACTTCCCGACTA
                      ____________________________________________________________
consensus TGGCTGCTCTCCGCACTGTCACCGCCTTGTGCGTGATTGCGCTTGGGCACTTCCCGACTA
 
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rJMSF024H21+ AGATCATGGAGGATGAGGCGTTGTTGAAACAAAACGTGTCTGCTACGACTGATTTGGCCA
rJMSF016P13+ AGATCATGGAGGATGAGGCGTTGTTGAAACAAAACGTGTCTGCTACGACTGATTTGGCCA
rJMSF015H23+ AGATCATGGAGGATGAGGCGTTGTTGAAACAAAACGTGTCTGCTACGACTGATTTGGCCA
rJMSF017N17+ AGATCATGGAGGATGAGGCGTTGTTGAAACAAAACGTGTCTGCTACGACTGATTTGGCCA
                      ____________________________________________________________
consensus AGATCATGGAGGATGAGGCGTTGTTGAAACAAAACGTGTCTGCTACGACTGATTTGGCCA
 
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rJMSF024H21+ TTCGGTTCAGAATCCAAAAGAAGTCTGTCATTATAGATGTTATGCGGGATCTTACGAGGA
rJMSF016P13+ TTCGGTTCAGAATCCAAAAGAAGTCTGTCATTATAGATGTTATGCGGGATCTTACGAGGA
rJMSF015H23+ TTCGGTTCAGAATCCAAAAGAAGTCTGTCATTATAGATGTTATGCGGGATCTTACGAGGA
rJMSF017N17+ TTCGGTTCAGAATCCAAAAGAAGTCTGTCATTATAGATGTTATGCGGGATCTTACGAGGA
                      ____________________________________________________________
consensus TTCGGTTCAGAATCCAAAAGAAGTCTGTCATTATAGATGTTATGCGGGATCTTACGAGGA
 
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rJMSF024H21+ GGGTGAAGTTGCTCCTCTCGAAGGAATCTGCTACTGCCCAAAGCTAGCTAGGTATCAATC
rJMSF016P13+ GGGTGAAGTTGCTCCTCTCGAAGGAATCTGCTACTGCCCAAAGCTAGCTAGGTATCAATC
rJMSF015H23+ GGGTGAAGTTGCTCCTCTCGAAGGAATCTGCTACTGCCCAAAGCTAGCTAGGTATCAATC
rJMSF017N17+ GGGTGAAGTTGCTCCTCTCGAAGGAATCTGCTACTGCCCAAAGCTAGCTAGGTATCAATC
                      ____________________________________________________________
consensus GGGTGAAGTTGCTCCTCTCGAAGGAATCTGCTACTGCCCAAAGCTAGCTAGGTATCAATC
 
. : . : . : . : . : . :
rJMSF024H21+ TCCCCTTCTAGAAGAGCTTTTCACATATGAAGAATTTGTTGTACTATAATGCAAGTCTTG
rJMSF016P13+ TCCCCTTCTAGAAGAGCTTTTCACATATGAAGAATTTGTTGTACTATAATGCAAGTCTTG
rJMSF015H23+ TCCCCTTCTAGAAGAGCTTTTCACATATGAAGAATTTGTTGTACTATAATGCAAGTCTTG
rJMSF017N17+ TCCCCTTCTAGAAGAGCTTTTCACATATGAAGAATTTGTTGTACTATAATGCAAGTCTTG
                      ____________________________________________________________
consensus TCCCCTTCTAGAAGAGCTTTTCACATATGAAGAATTTGTTGTACTATAATGCAAGTCTTG
 
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rJMSF024H21+ TCTCATAT
rJMSF016P13+ TCTCATATTGAGCAACTTTTGATAGTGTTATACCTTTGATCTTCTATGATTCCTTGTTTT
rJMSF015H23+ TCTCATATTGAGCAACTTTTGATAGTGTTATACCTTTGATCTTCTATGATTCCTTGTTTT
rJMSF017N17+ TCTCATATTGAGCAACTTTTGATAGTGTTATACCTTTGATCTTCTATGATTCCTTGTTTT
                      ____________________________________________________________
consensus TCTCATATTGAGCAACTTTTGATAGTGTTATACCTTTGATCTTCTATGATTCCTTGTTTT
 
. : . : . : . : . : . :
rJMSF016P13+ CTCATTTGGCCGACTTAGAATGGAATCATTGAAGAATACAACTT
rJMSF015H23+ CTCATTTGGCCGACTTAGAATGGAATCATTGAAGAATACAACTTTGATATTGCATCTCT
rJMSF017N17+ CTCATTTGGCCGACTTAGAATGGAATCATTGAAGAATACAACTTTGATATTGCATCTCTT
                      ____________________________________________________________
consensus CTCATTTGGCCGACTTAGAATGGAATCATTGAAGAATACAACTTTGATATTGCATCTCTT