| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF016J06 | Sequence | 631 | 012578 (6) | ref|XP_011099186.1| | 1e-106 | PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Sesamum indicum] | 652 | 012578 (6) | ref|XP_009775852.1| | 6e-55 | PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4-like [Nicotiana sy |
| JMSF017G04 | Sequence | 239 | 012578 (6) | ref|XP_002297757.2| | 9e-12 | brix domain-containing family protein [Populus trichocarpa] gb|EEE82562.2| brix | 649 | 012578 (6) | ref|XP_009775852.1| | 3e-59 | PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4-like [Nicotiana sy |
| JMSF034J14 | Sequence | 670 | 012578 (6) | ref|XP_011099186.1| | 9e-125 | PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Sesamum indicum] | 771 | 012578 (6) | ref|XP_009771221.1| | 4e-101 | PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4-like isoform X1 [N |
This contig is upended
. : . : . : . : . : . :
JMSF017G04- GCTAAAACCCTCTTTTCTCCATCGTCTTCTTCATTCGTTCATCTTCAACCATTC
JMSF016J06- GCTAAAACCCTCTTTTCTCCATCGTCTTCTTCATTCGTTCATCTTCAACCATTC
JMSF034J14- ATTCGTTCATCTTCAACCATTC
____________________________________________________________
consensus GCTAAAACCCTCTTTTCTCCATCGTCTTCTTCATTCGTTCATCTTCAACCATTC
. : . : . : . : . : . :
JMSF017G04- TCAAACCCTTCAATTGTCGTCTGGACCAGAAATCGGTTGAAATCGACCAAGTTAGGCTAA
JMSF016J06- TCAAACCCTTCAATTGTCGTCTGGACCAGAAATCGGTTGAAATCGACCAAGTTAGGCTAA
JMSF034J14- TCAAACCCTTCAATTGTCGTCTGGACCAGAAATCGGTTGAAATCGACCAAGTTAGGCTAA
____________________________________________________________
consensus TCAAACCCTTCAATTGTCGTCTGGACCAGAAATCGGTTGAAATCGACCAAGTTAGGCTAA
. : . : . : . : . : . :
JMSF017G04- CACAACCTCTTCAAAATGTTGAGGAGGAACGTAAGGATGAGGAGGGAGTACCTCTACAGG
JMSF016J06- CACAACCTCTTCAAAATGTTGAGGAGGAACGTAAGGATGAGGAGGGAGTACCTCTACAGG
JMSF034J14- CACAACCTCTTCAAAATGTTGAGGAGGAACGTAAGGATGAGGAGGGAGTACCTCTACAGG
____________________________________________________________
consensus CACAACCTCTTCAAAATGTTGAGGAGGAACGTAAGGATGAGGAGGGAGTACCTCTACAGG
. : . : . : . : . : . :
JMSF017G04- AAGAGTTTGGAAGGCAAAGAGCGTTTGCTTTATGAGAAGAAACGCAAAATCAAAGAAGCT
JMSF016J06- AAGAGTTTGGAAGGCAAAGAGCGTTTGCTTTATGAGAAGAAACGCAAAATCAAAGAAGCT
JMSF034J14- AAGAGTTTGGAAGGCAAAGAGCGTTTGCTTTATGAGAAGAAACGCAAAATCAAAGAAGCT
____________________________________________________________
consensus AAGAGTTTGGAAGGCAAAGAGCGTTTGCTTTATGAGAAGAAACGCAAAATCAAAGAAGCT
. : . : . : . : . : . :
JMSF017G04- CTTGA
JMSF016J06- CTTGAAGAGGGAAAGCCGATTCCAACTGAACTCAGAAACGAAGAAGCAGCACTTCGACAA
JMSF034J14- CTTGAAGAGGGAAAGCCGATTCCAACTGAACTCAGAAACGAAGAAGCAGCACTTCGACAA
____________________________________________________________
consensus CTTGAAGAGGGAAAGCCGATTCCAACTGAACTCAGAAACGAAGAAGCAGCACTTCGACAA
. : . : . : . : . : . :
JMSF016J06- CAAATTGACCTCGAAGACGAACATACTGCTGTACCAAGGTCTACTATTGATGATGAATAT
JMSF034J14- CAAATTGACCTCGAAGACGAACATACTGCTGTACCAAGGTCTACTATTGATGATGAATAT
____________________________________________________________
consensus CAAATTGACCTCGAAGACGAACATACTGCTGTACCAAGGTCTACTATTGATGATGAATAT
. : . : . : . : . : . :
JMSF016J06- GCTCATGCTGCTGAAAAGGATCCCAAAATTTTGATTACCACGTCCCGCAATCCAAGTGCT
JMSF034J14- GCTCATGCTGCTGAAAAGGATCCCAAAATTTTGATTACCACGTCCCGCAATCCAAGTGCT
____________________________________________________________
consensus GCTCATGCTGCTGAAAAGGATCCCAAAATTTTGATTACCACGTCCCGCAATCCAAGTGCT
. : . : . : . : . : . :
JMSF016J06- CCTCTTACTCAATTTGCAAAGGAATTGAAGATTGTATTCCCCAATGCAACACGAATGAAT
JMSF034J14- CCTCTTACTCAATTTGCAAAGGAATTGAAGATTGTATTCCCCAATGCAACACGAATGAAT
____________________________________________________________
consensus CCTCTTACTCAATTTGCAAAGGAATTGAAGATTGTATTCCCCAATGCAACACGAATGAAT
. : . : . : . : . : . :
JMSF016J06- CGTGGTGGTCAGGTAATATCAGAAATTATTGAAACCTGCCGTTCTCATGATTTTACAGAT
JMSF034J14- CGTGGTGGTCAGGTAATATCAGAAATTATTGAAACCTGCCGTTCTCATGATTTTACAGAT
____________________________________________________________
consensus CGTGGTGGTCAGGTAATATCAGAAATTATTGAAACCTGCCGTTCTCATGATTTTACAGAT
. : . : . : . : . : . :
JMSF016J06- GTTATTCTAGTTCATGAGCATCGAGGTATTCCTGATGGTCTTATCATCAGTCATTTGCCT
JMSF034J14- GTTATTCTAGTTCATGAGCATCGAGGTATTCCTGATGGTCTTATCATCAGTCATTTGCCT
rJMSF034J14+ TATTCTAGTTCNTGAGCATCGAGGTANTCCTGATGGTCTTATCATCAGTCATTTGCCT
____________________________________________________________
consensus GTTATTCTAGTTCATGAGCATCGAGGTATTCCTGATGGTCTTATCATCAGTCATTTGCCT
. : . : . : . : . : . :
JMSF016J06- TTTGGTCCAACTGCCTATTTTGGATTACTCAATGTGG
JMSF034J14- TTTGGTCCAACTGCCTATTTTGGATTACTCAATGTGGTAACCAGACATGATATTAAGGAC
rJMSF034J14+ TTTGGTCCAACTGCCTATTTTGGATTACTCAATGTGGTAACCAGACATGATATTAAGGAC
____________________________________________________________
consensus TTTGGTCCAACTGCCTATTTTGGATTACTCAATGTGGTAACCAGACATGATATTAAGGAC
. : . : . : . : . : . :
JMSF034J14- AAAAAGGCTATGGGAACCATGCCTGAGGCTTATCCTCATTTGATATT
rJMSF034J14+ AAAAAGGCTATGGGAACCATGCCTGAGGCTTATCCTCATTTGATATTAAACAACTTCTCA
rJMSF016J06+ AAAAGGCTCTGGGANCCATGCCTGAGGCTTATCCTCATTTGATATTAAACAACTTNTCA
rJMSF017G04+ CATGCCTGAGGCTTATCCTCATTTGATATTAAACAACTTCTCA
____________________________________________________________
consensus AAAAAGGCTATGGGAACCATGCCTGAGGCTTATCCTCATTTGATATTAAACAACTTCTCA
. : . : . : . : . : . :
rJMSF034J14+ ACTAAGCTTGGTGAAAGGACGGTAAATATTTTAAAGCATCTGTTTCCGGTCCCAAAGCCG
rJMSF016J06+ NCTAAGCTTGGNGAAAGGNCGGTAAATNNTTTAAAGCATCTNTTTCCGGTCCCAAAGCCG
rJMSF017G04+ ACTAAGCTTGGTGAAAGGACGGTAAATATTTTAAAGCATCTGTTTCCGGTCCCAAAGCCG
____________________________________________________________
consensus ACTAAGCTTGGTGAAAGGACGGTAAATATTTTAAAGCATCTGTTTCCGGTCCCAAAGCCG
. : . : . : . : . : . :
rJMSF034J14+ GATACGAAGCGTATTATCACATTTGCTAATCAATCAGACTATATCTCATTCAGACATCAT
rJMSF016J06+ GATACGAAGCGTATTATCNCATNTGCTAATCAATCAGACTATATCTCATTCAGACATCAT
rJMSF017G04+ GATACGAAGCGTATTATCACATNTGCTAATCAATCAGACTATATCTCATTCAGACATCAT
____________________________________________________________
consensus GATACGAAGCGTATTATCACATTTGCTAATCAATCAGACTATATCTCATTCAGACATCAT
. : . : . : . : . : . :
rJMSF034J14+ ATCTATGAGAAACGTGGAGGTCCCAAATCAATTGAACTCAAAGAGATTGGCCCTCGATTT
rJMSF016J06+ ATCTNTGAGAAACGTGGAGGTCCCAAATCAATTGAACTCAAAGAGATTGGCCCTCGATTN
rJMSF017G04+ ATNTNTGAGAAACGTGGAGGTCCCAAATCAATTGAACTCAAAGAGATTGGCCCTCGATTT
____________________________________________________________
consensus ATCTATGAGAAACGTGGAGGTCCCAAATCAATTGAACTCAAAGAGATTGGCCCTCGATTT
. : . : . : . : . : . :
rJMSF034J14+ GAACTACGGCTTTATCAGATCAAGCTAGGAACTATGGATCAAGATGAAGCTCAAATTGAA
rJMSF016J06+ GAANTACGGCTTNATCAGATCAAGNTAGGANCTATGGNTCAAGATGAAGCTCAAATTGAA
rJMSF017G04+ GAANTACGGCTTNATCAGATCAAGNTAGGAACTATGGNTCAAGATGAAGCTCAAATTGAA
____________________________________________________________
consensus GAACTACGGCTTTATCAGATCAAGCTAGGAACTATGGATCAAGATGAAGCTCAAATTGAA
. : . : . : . : . : . :
rJMSF034J14+ TGGGTCATAAGACCATATATGAACACTTCCAAAAAACAGAAACTTCTTGGAGACTGAAAG
rJMSF016J06+ TGGGTCATAAGNCCANATATGAACACTTCCNAAAAACAGAAACTTCNTGGAGACTGAAAG
rJMSF017G04+ TGGGTCATAAGNCCANATATGAACACTTCCNAAAAACAGAAACTTCNTGGAGACTGAAAG
____________________________________________________________
consensus TGGGTCATAAGACCATATATGAACACTTCCAAAAAACAGAAACTTCTTGGAGACTGAAAG
. : . : . : . : . : . :
rJMSF034J14+ AATCAGAGTCTCATTCTACACATCAACCAATTTTGCCAGTAATGAGAGCAATGTAATACC
rJMSF016J06+ AATCAGAGTCTCNTTCTACNCATCAACCNATTTTGCCNGTAATGNGAGCAATGTAATNCC
rJMSF017G04+ AATCAGAGTCTCNTTCTACNCNTCAACCNATTTTGCCNGTAATGNGAGCAATGTAATNCC
____________________________________________________________
consensus AATCAGAGTCTCATTCTACACATCAACCAATTTTGCCAGTAATGAGAGCAATGTAATACC
. : . : . : . : . : . :
rJMSF034J14+ AACAGGTGTGTGTTTCTGCTGTTAGGTTTGGTAAAAGTTTGTTACAATATGATTGCTATG
rJMSF016J06+ AACAGGTGTGTGNTTCTGCTGTTAGGTTTGGTAAAAGTTTGTTACAATATGATTNCTATG
rJMSF017G04+ AACAGGTGTGTGNTTCTGCTGNTAGGTTTGGTAAAAGTTTGTTACAATATGATTNCTATG
____________________________________________________________
consensus AACAGGTGTGTGTTTCTGCTGTTAGGTTTGGTAAAAGTTTGTTACAATATGATTGCTATG
. : . : . : . : . : . :
rJMSF034J14+ TGGGTTGTTTTCAGAGGGGCGATGAATACATTCTGCCTAACAATCTCTTTAGGACATCAC
rJMSF016J06+ TGGGTTGTTTTCAGAGGGGCGATGAATACNTTCNGCCTNACAATCTCTTTNGGACATCNC
rJMSF017G04+ TGGGTTGTTTTCAGAGGGGCGATGAATACNTTCTGCCTNACAATCTCTTTAGGACATCNC
____________________________________________________________
consensus TGGGTTGTTTTCAGAGGGGCGATGAATACATTCTGCCTAACAATCTCTTTAGGACATCAC
. : . : . : . : . : . :
rJMSF034J14+ ATAGGGCATTAGTTTGGATTGTTTTCT-TTATCAATGATTTAGTTACCTCTTTTGCCCTT
rJMSF016J06+ ATAGGGCNTNAGTTTGNATTGTTTTCTGNTATCAATGATTTAGTTACCTCTTTTGCCCTT
rJMSF017G04+ ATAGGGCNTTAGTTTGNATTGTTTTC-NNTATCAATGATTTAGTTACCTCTTNTGCCCTT
____________________________________________________________
consensus ATAGGGCATTAGTTTGGATTGTTTTCTGTTATCAATGATTTAGTTACCTCTTTTGCCCTT
. : . : . : . : . : . :
rJMSF034J14+ TGTAATATTTGGATTTAGGGAGGTGAAGCTGGGGAGT
rJMSF016J06+ TGTAATATTTGGATTTAGGGAGGTGAAGCNGGGGAGT
rJMSF017G04+ TGTAATATTTGGATTTAGGGAGGTGAAGCTGGGGAGTTGGAAATTGTATTTTNATAACNA
____________________________________________________________
consensus TGTAATATTTGGATTTAGGGAGGTGAAGCTGGGGAGTTGGAAATTGTATTTTNATAACNA