Contig 012573:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016P17Sequence298012573 (4)ref|XP_006362033.1|5e-11PREDICTED: uncharacterized protein LOC102589836 isoform X2 [Solanum tuberosum]673012573 (4)ref|XP_006362033.1|1e-19PREDICTED: uncharacterized protein LOC102589836 isoform X2 [Solanum tuberosum]
JMSF020I17Sequence621012573 (4)ref|XP_006362033.1|7e-20PREDICTED: uncharacterized protein LOC102589836 isoform X2 [Solanum tuberosum]567012573 (4)ref|XP_006362033.1|5e-20PREDICTED: uncharacterized protein LOC102589836 isoform X2 [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF020I17+                                                            GAAATAAAGC
JMSF016P17-                                                             GAAATAAAGC
JMSF020I17-                                                       GAGCAAGAAATAAAGC
rJMSF016P17+                                                            GAAATAAAGC
                      ____________________________________________________________
consensus                                                         GAGCAAGAAATAAAGC
 
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rJMSF020I17+          TGCCACAGAGAGAGAAAATTAAAGAGAGAGAGAGAGAGAGAGAGAAGTGGAAAAAGCATA
JMSF016P17-           TGCCACAGAGAGAGAAAATTAAAGAGAGAGAGAGAGAGAGAGAGAAGTGGAAAAAGCATA
JMSF020I17-           TGCCACAGAGAGAGAAAATTAAAGAGAGAGAGAGAGAGAGAGAGAAGTGGAAAAAGCATA
rJMSF016P17+          TGCCACAGAGAGAGAAAATTAAAGAGAGAGAGAGAGAGAGAGAGAAGTGGAAAAAGCATA
                      ____________________________________________________________
consensus             TGCCACAGAGAGAGAAAATTAAAGAGAGAGAGAGAGAGAGAGAGAAGTGGAAAAAGCATA
 
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rJMSF020I17+          ACTTTGTTGAGTGAAGTGAAAAATGGTGTATAAGAAGATTATTGGTCTGGTCTTCTTCTT
JMSF016P17-           ACTTTGTTGAGTGAAGTGAAAAATGGTGTATAAGAAGATTATTGGTCTGGTCTTCTTCTT
JMSF020I17-           ACTTTGTTGAGTGAAGTGAAAAATGGTGTATAAGAAGATTATTGGTCTGGTCTTCTTCTT
rJMSF016P17+          ACTTTGTTGAGTGAAGTGAAAAATGGTGTATAAGAAGATTATTGGTCTGGTCTTCTTCTT
                      ____________________________________________________________
consensus             ACTTTGTTGAGTGAAGTGAAAAATGGTGTATAAGAAGATTATTGGTCTGGTCTTCTTCTT
 
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rJMSF020I17+          CATTCTCTTATCACTTTTGCCAGCTTCATTTGCAGGTCGCCAAGCAATGCTTGCCAACAA
JMSF016P17-           CATTCTCTTATCACTTTTGCCAGCTTCATTTGCAGGTCGCCAAGCAATGCTTGCCAACAA
JMSF020I17-           CATTCTCTTATCACTTTTGCCAGCTTCATTTGCAGGTCGCCAAGCAATGCTTGCCAACAA
rJMSF016P17+          CATTCTCTTATCACTTTTGCCAGCTTCATTTGCAGGTCGCCAAGCAATGCTTGCCAACAA
                      ____________________________________________________________
consensus             CATTCTCTTATCACTTTTGCCAGCTTCATTTGCAGGTCGCCAAGCAATGCTTGCCAACAA
 
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rJMSF020I17+          CCACCTTGAGAAGCAAGACATGAGTGCAACTTATGAGGAAGAGGTGAACGTGATCCATGA
JMSF016P17-           CCACCTTGAGAAGCAAGACATGAGTGCAACTTATGAGGAAGAGGTGAACGTGATCCATGA
JMSF020I17-           CCACCTTGAGAAGCAAGACATGAGTGCAACTTATGAGGAAGAGGTGAACGTGATCCATGA
rJMSF016P17+          CCACCTTGAGAAGCAAGACATGAGTGCAACTTATGAGGAAGAGGTGAACGTGATCCATGA
                      ____________________________________________________________
consensus             CCACCTTGAGAAGCAAGACATGAGTGCAACTTATGAGGAAGAGGTGAACGTGATCCATGA
 
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rJMSF020I17+          AAGGGTTCTTAGGGCTAATACAAAGGACTATGGAAAGTACGATCCATCTCCAACATTTGT
JMSF016P17-           AAGGGTTCTTAGGGCTAATACNAAGGACTATGGAAAGTACGATCC               
JMSF020I17-           AAGGGTTCTTAGGGCTAATACAAAGGACTATGGAAAGTACGATCCATCTCCAACATTTGT
rJMSF016P17+          AAGGGTTCTTAGGGCTAATACAAAGGACTATGGAAAGTACGATCCATCTCCAACATTTGT
                      ____________________________________________________________
consensus             AAGGGTTCTTAGGGCTAATACAAAGGACTATGGAAAGTACGATCCATCTCCAACATTTGT
 
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rJMSF020I17+          GAAGCCTCCATTCAAGCTCATCCCCAACTGATCTCACTTCATCATATCGTTTTCACACAG
JMSF020I17-           GAAGCCTCCATTCAAGCTCATCCCCAACTGATCTCACTTCATCATATCGTTTTCACACAG
rJMSF016P17+          GAAGCCTCCATTCAAGCTCATCCCCAACTGATCTCACTTCATCATATCGTTTTCACACAG
                      ____________________________________________________________
consensus             GAAGCCTCCATTCAAGCTCATCCCCAACTGATCTCACTTCATCATATCGTTTTCACACAG
 
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rJMSF020I17+          ACAAAAATGCANGCATGGGATATACATACATACTATACATATATGACACATATATATAAT
JMSF020I17-           ACAAAAATGCATGCNTGGGATATACATACATACTATACATATATGACACATATATATAAT
rJMSF016P17+          ACAAAAATGCANGCATGGGATATACATACATACTATACATATATGACACATATATATAAT
                      ____________________________________________________________
consensus             ACAAAAATGCATGCATGGGATATACATACATACTATACATATATGACACATATATATAAT
 
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rJMSF020I17+          ATATAGTACAAGGATCAGTTTGAGCGTTCTGTGTACGTTAACCCTAGCTAGCTAGCTGCG
JMSF020I17-           ATATAGTACAAGGATCAGTTTGAGCGTTCTGTGTACGTTAACCCTAGCTAGCTAGCTGCG
rJMSF016P17+          ATATAGTACAAGGATCAGTTTGAGCGTTCTGTGTACGTTAACCCTAGCTAGCTAGCTGCG
                      ____________________________________________________________
consensus             ATATAGTACAAGGATCAGTTTGAGCGTTCTGTGTACGTTAACCCTAGCTAGCTAGCTGCG
 
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rJMSF020I17+          TTTAGCTTGTGTCGCAGATATATATATAGTGTTTGAGCTATATATATATATATGTGTGTG
JMSF020I17-           TTTAGCTTGTGTCGCAGATATATATATAGTGTTTGAGCTATATATATATATATGTGTGTG
rJMSF016P17+          TTTAGCTTGTGTCGCAGATATATATATAGTGTTTGAGCTATATATATATATATGTGTGTG
                      ____________________________________________________________
consensus             TTTAGCTTGTGTCGCAGATATATATATAGTGTTTGAGCTATATATATATATATGTGTGTG
 
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rJMSF020I17+          TGTGTATGTAC                                                 
JMSF020I17-           TGTGTNTGTACTATATATATGTAGTGTTCTTCATATGAAATATGTGTGTGTAAGCA    
rJMSF016P17+          TGTGTATGTACTATATATATGTAGTGTTCTTCATATGAAATATGTGTGTGTAAGCATAGG
                      ____________________________________________________________
consensus             TGTGTATGTACTATATATATGTAGTGTTCTTCATATGAAATATGTGTGTGTAAGCATAGG
 
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rJMSF016P17+          CTGTTTGCCGATTACTGCGTACGCTAATGTGTGTAGTTCCATGTGCATGTACTCCGGCCA
                      ____________________________________________________________
consensus             CTGTTTGCCGATTACTGCGTACGCTAATGTGTGTAGTTCCATGTGCATGTACTCCGGCCA