Contig 012545:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008H17Sequence282012545 (8)
JMFF011A17Sequence576013276 (6)ref|XP_006340083.1|3e-68PREDICTED: signal recognition particle subunit SRP72-like [Solanum tuberosum]702012545 (8)ref|XP_009607855.1|4e-52PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif
JMFF016I17Sequence540013276 (6)ref|XP_011080276.1|4e-75PREDICTED: signal recognition particle subunit SRP72-like [Sesamum indicum]786012545 (8)ref|XP_009607855.1|1e-71PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif
JMFN017M15Sequence626012545 (8)ref|XP_009769400.1|1e-43PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana sylvestris
JMSF005N21Sequence299013276 (6)ref|XP_006340083.1|2e-27PREDICTED: signal recognition particle subunit SRP72-like [Solanum tuberosum]420012545 (8)ref|XP_004250878.1|4e-26PREDICTED: signal recognition particle subunit SRP72 [Solanum lycopersicum]
JMSF008G04Sequence374013276 (6)ref|XP_009789058.1|6e-65PREDICTED: LOW QUALITY PROTEIN: signal recognition particle subunit SRP72-like 789012545 (8)ref|XP_009607855.1|3e-87PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif
JMSF011G24Sequence230013276 (6)ref|XP_006340083.1|6e-13PREDICTED: signal recognition particle subunit SRP72-like [Solanum tuberosum]786012545 (8)ref|XP_009607855.1|6e-64PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif
JMSF050B04Sequence647013276 (6)ref|XP_011080276.1|3e-99PREDICTED: signal recognition particle subunit SRP72-like [Sesamum indicum]773012545 (8)ref|XP_009607855.1|2e-71PREDICTED: signal recognition particle subunit SRP72-like [Nicotiana tomentosif

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF008G04+ GTGTTTAATGCTGCCATTGAATGGTGGTCAAATGCCAT
                      ____________________________________________________________
consensus GTGTTTAATGCTGCCATTGAATGGTGGTCAAATGCCAT
 
. : . : . : . : . : . :
rJMSF008G04+ GACTGAAGACAATAAGCTTGATACCATCATGCAAGAGGCTGCTGCATTCAAACTCAGACA
rJMSF050B04+ AGCTTGATACCATCATGCAAGAGGCTGCTGCATTCAAANTCAGACA
rJMFF016I17+ CATCATGCAAGAGGCTGCTGCATTCAAACTCAGACA
rJMSF011G24+ TCAGACA
                      ____________________________________________________________
consensus GACTGAAGACAATAAGCTTGATACCATCATGCAAGAGGCTGCTGCATTCAAACTCAGACA
 
. : . : . : . : . : . :
rJMSF008G04+ TGGGCGGAAGGAAGAGGCTGCCCGGCTATATGAGAAGCTGGTTAAAAGCCACGGAAGTAT
rJMSF050B04+ TGGGCGGAAGGAAGAGGCTGCCCGGCTATATGAGAAGCTGGTTAAAAGCCACGGAAGTAT
rJMFF011A17+ CCACGGAAGTAT
rJMFF016I17+ TGGGCGGAAGGAAGAGGCTGCCCGGCTATATGAGAAGCTGGTTAAAAGCCACGGAAGTAT
rJMSF011G24+ TGGGCGGAAGGAAGAGGCTGCCCGGCTATATGAGAAGCTGGTTAAAAGCCACGGAAGTAT
                      ____________________________________________________________
consensus TGGGCGGAAGGAAGAGGCTGCCCGGCTATATGAGAAGCTGGTTAAAAGCCACGGAAGTAT
 
. : . : . : . : . : . :
rJMSF008G04+ AGAGGCTTTAGTCGGGTTGATCCAGACAACTGCTCAATCTGATATTGAAAAAGCAGAAGC
rJMSF050B04+ AGAGGCTTTAGTCGGGTTGATCCAGACAACTGCTCAATCTGATATTGAAAAAGCAGAAGC
rJMFF011A17+ AGAGGCTTTAGTCGGGTTGATCCAGACAACTGNTCAATCTGATATTGAAAAAGCAGAAGC
rJMFF016I17+ AGAGGCTTTAGTCGGGTTGATCCAGACAACTGCTCAATCTGATATTGAAAAAGCAGAAGC
JMFN017M15- CAACTGCTCAATCTGATATTGAAAAAGCAGAAGC
rJMSF011G24+ AGAGGCTTTAGTCGGGNTGATCCAGACAACTGCTCAATCTGATATTGAAAAAGCAGAAGC
                      ____________________________________________________________
consensus AGAGGCTTTAGTCGGGTTGATCCAGACAACTGCTCAATCTGATATTGAAAAAGCAGAAGC
 
. : . : . : . : . : . :
rJMSF008G04+ TTACGAAAAGCAGCTGAAACCACTCCCTGGTTTGAAGGCGGTTGATATTGATAGTTTGGA
rJMSF050B04+ TTACGAAAAGCAGCTGAAACCACTCCCTGGTTTGAAGGCGGTTGATATTGGTAGTTTGGA
rJMFF011A17+ TTACGAAAAGCAGCTGAAACCACTCCCTGGTTTGAAGGCGGTTGATATTGATAGTTTGGA
rJMFF016I17+ TTACGAAAAGCAGCTGAAACCACTCCCTGGTTTGAAGGCGGTTGATATTGATAGTTTGGA
JMFN017M15- TTACGAAAAGCAGCTGAAACCACTCCCTGGTTTGAAGGCGGTTGATATTGATAGTTTGGA
rJMSF011G24+ TTACGAAAAGCAGCTGAAACCACTCCCTGGTTTGAAGGCGGTTGATATTGATAGTTTGGA
                      ____________________________________________________________
consensus TTACGAAAAGCAGCTGAAACCACTCCCTGGTTTGAAGGCGGTTGATATTGATAGTTTGGA
 
. : . : . : . : . : . :
rJMSF008G04+ GAAAACTTCTGGTGCCAAGGGTGTTGGTAGTGGTCCTACTCTTAGTGTAGCCGAAGCATA
rJMSF050B04+ GAAAACTTCTGGTGCCAAGGGTGTTGGTAGTGGTCCTACTCTTAGTGTAGCCGAAGCATA
rJMFF011A17+ GAAAACTTCTGGTGCCAAGGGTGTTGGTAGTGGTCCTACTCTTAGTGTAGCCGAAGCATA
rJMFF016I17+ GAAAACTTCTGGTGCCAAGGGTGTTGGTAGTGGTCCTACTCTTAGTGTAGCCAAAGCATA
JMFN017M15- GAAAACTTCTGGTGCCAAGGGTGTTGGTAGTGGTCCTACTCTTAGTGTAGCCGAAGCATA
rJMSF011G24+ GAAAACTTCTGGTGCCAAGGGTGTTGGTAGTGGTCCTACTCTTAGTGTAGCCGAAGCATA
                      ____________________________________________________________
consensus GAAAACTTCTGGTGCCAAGGGTGTTGGTAGTGGTCCTACTCTTAGTGTAGCCGAAGCATA
 
. : . : . : . : . : . :
rJMSF008G04+ TGAAACCAAGAGCAAGGAGAAACCAAAGAAGAAGAGAAAGAGAAAGCCTAGATACCCTAA
rJMSF050B04+ TGAAACCAAGAGCAAGGAGAAACCAAAGAAGAAGAGAAAGAGAAAGCCTAGATACCCTAA
rJMFF011A17+ TGAAACCAAGAGCAAGGAGAAACCAAAGAAGAAGAGAAAGAGAAAGCCTAGATACCCTAA
rJMSF005N21+ TAA
rJMFF016I17+ TGAAACCAAGAGCAAGGAGAAACCAAAGAAGAAGAGAAAGAGAAAGCCTAGATACCCTAA
JMFN017M15- TGAAACCAAGAGCAAGGAGAAACCAAAGAAGAAGAGAAAGAGAAAGCCTAGATACCCTAA
rJMSF011G24+ TGAAACCAAGAGCAAGGAGAAACCAAAGAAGAAGAGAAAGAGAAAGCCTAGATACCCTAA
                      ____________________________________________________________
consensus TGAAACCAAGAGCAAGGAGAAACCAAAGAAGAAGAGAAAGAGAAAGCCTAGATACCCTAA
 
. : . : . : . : . : . :
rJMSF008G04+ AGGATTTGATCCCGCAAATCCAGGTCCCCCACCAGATCCAGAGCGCTGGCTTCCAAAGAG
rJMSF050B04+ AGGATTTGATCCCGCAAATCCAGGTCCCCCACCAGATCCAGAGCGCTGGCTTCCAAAGAG
rJMFF011A17+ AGGATTTGATCCCGCAAATCCAGGTCCCCCACCAGATCCAGAGCGCTGGCTTCCAAAGAG
rJMSF005N21+ AGGATTTGATCCCGCAAATCCAGGTCNCCCACCAGATCCAGAGCGCTGGCNTNCAAAGAG
rJMFF016I17+ AGGATTTGATCCCGCAAATCCAGGTCCCCCACCAGATCCAGAGCGCTGGCTTCCAAAGAG
JMFN017M15- AGGATTTGATCCCGCAAATCCAGGTCCCCCACCAGATCCAGAGCGCTGGCTTCCAAAGAG
rJMSF011G24+ AGGATTTGATCCCGCAAATCCAGGTCCCCCACCAGATCCAGAGCGCTGGCTTCCAAAGAG
                      ____________________________________________________________
consensus AGGATTTGATCCCGCAAATCCAGGTCCCCCACCAGATCCAGAGCGCTGGCTTCCAAAGAG
 
. : . : . : . : . : . :
rJMFF008H17+ ACAAAAGAGCGGCNCAAATAAGAGGCTC
rJMSF008G04+ AGAGAGGTCCAGCTATAGACCGAAGAGAAAGGACAAAAGAGCGGCACAAATAAGAGGCTC
rJMSF050B04+ AGAGAGGTCCAGCTATAGACCGAAGAGAAAGGACAAAAGAGCGGCACAAATAAGAGGCTC
rJMFF011A17+ AGAGAGGTCCAGCTATAGACCGAAGAGAAAGGACAAAAGAGCGGCACAAATAAGAGGCTC
rJMSF005N21+ AGAGAGGTCCAGCTATAGACCGAAGAGAAAGGACAAAAGAGCGGCACAAATAAGAGGCTC
rJMFF016I17+ AGAGAGGTCCAGCTATAGACCGAAGAGAAAGGACAAAAGAGCGGCACAAATAAGAGGCTC
JMFN017M15- AGAGAGGTCCAGCTATAGACCGAAGAGAAAGGACAAAAGAGCGGCACAAATAAGAGGCTC
rJMSF011G24+ AGAGAGGTCCAGCTATAGACCGAAGAGAAAGGACAAAAGAGCGGCACAAATAAGAGGCTC
                      ____________________________________________________________
consensus AGAGAGGTCCAGCTATAGACCGAAGAGAAAGGACAAAAGAGCGGCACAAATAAGAGGCTC
 
. : . : . : . : . : . :
rJMFF008H17+ NCNAGGNGCANNGGCCAAAGAAGCTTCCAGTAGCAGCACATNGAANCCAAATCCAACTGC
rJMSF008G04+ ACAAGGCGCAGTGGCCAAAGAAGCTTCCAGTAGCAGCACATCGAAACCAAATCCAACTGC
rJMSF050B04+ ACAAGGCGCAGTGGCCAAAGAAGCTTCCAGTAGCAGCACATCGAAGCCAAATCCAACTGC
rJMFF011A17+ ACAAGGCGCAGTGGCCAAAGAAGCTTCCAGTAGCAGCACATCGAAACCAAATCCAACTGC
rJMSF005N21+ ACAAGGCGCAGTGGCCAAAGAAGCTTCCAGTAGCAGCACATCGAAACCAAATCCAACTGC
rJMFF016I17+ ACAAGGCGCAGTGGCCAAAGAAGCTTCCAGTAGCAGCACATCGAAACCAAATCCAACTGC
JMFN017M15- ACAAGGCGCAGTGGCCAAAGAAGCTTCCAGTAGCAGCACATCGAAACCAAATCCAACTGC
rJMSF011G24+ ACAAGGCGCAGTGGCCAAAGAAGCTTCCAGTAGCAGCACATCGAAACCAAATCCAACTGC
                      ____________________________________________________________
consensus ACAAGGCGCAGTGGCCAAAGAAGCTTCCAGTAGCAGCACATCGAAACCAAATCCAACTGC
 
. : . : . : . : . : . :
rJMFF008H17+ CAATCCCAAAGGAGCCTCACNGAACTCCAATGCCGACCAACCAAAGACCTCCAAGTCATC
rJMSF008G04+ CAATCCCAAAGGAGCCTCACAGAACTCCAATGCCGACCAACCAAAGACCTCCAAGTCATC
rJMSF050B04+ CAATCCCAAAGGAGCCTCACAGAACTCCAATGCCGACCAACCAAAGACCTCCAAGTCATC
rJMFF011A17+ CAATCCCAAAGGAGCCTCACAGAACTCCAATGCCGACCAACCAAAGACCTCCAAGTCATC
rJMSF005N21+ CAATCCCAAAGGAGCCTCACAGAACTCCAATGCCGACCAACCAAAGACCTNCAAGTCATC
rJMFF016I17+ CAATCCCAAAGGAGCCTCACAGAACTCCAATGCCGACCAACCAAAGACCTCCAAGTCATC
JMFN017M15- CAATCCCAAAGGAGCCTCACAGAACTCCAATGCCGACCAACCAAAGACCTCCAAGTCATC
rJMSF011G24+ CAATCCCAAAGGAGCCTCACAGAACTCCAATGCCGACCAACCAAAGACCTCCAAGTCATC
                      ____________________________________________________________
consensus CAATCCCAAAGGAGCCTCACAGAACTCCAATGCCGACCAACCAAAGACCTCCAAGTCATC
 
. : . : . : . : . : . :
rJMFF008H17+ CAAGAAGAAATCAAGGAAGTANNTGAACCCACCATTTGAAGGTTAATATTCAATTTGGGC
rJMSF008G04+ CAAGAAGAAATCAAGGAAGTAACTGAACCCACCATTTGAAGGTTAATATTCAATTTGGGC
rJMSF050B04+ CAAGAAGAAATCAAGGAAGTAACTGAACCCACCATTTGAAGGTTAATATTCAATTTGGGC
rJMFF011A17+ CAAGAAGAAATCAAGGAAGTAACTGAACCCACCATTTGAAGGTTAATATTCAATTTGGGC
rJMSF005N21+ CAAGANGAAATCAAGGAAGTAACTGAACCCACCATTTGAAGGTTAATATTCAATTTGGGC
rJMFF016I17+ CAAGAAGAAATCAAGGAAGTAACTGAACCCACCATTTGAAGGTTAATATTCAATTTGGGC
JMFN017M15- CAAGAAGAAATCAAGGAAGTAACTGAACCCACCATTTGAAGGTTAATATTCAATTTGGGC
rJMSF011G24+ CAAGAAGAAATCAAGGAAGTAACTGAACCCACCATTTGAAGGTTAATATTCAATTTGGGC
                      ____________________________________________________________
consensus CAAGAAGAAATCAAGGAAGTAACTGAACCCACCATTTGAAGGTTAATATTCAATTTGGGC
 
. : . : . : . : . : . :
rJMFF008H17+ ATANTTCATTGCATTTTCCCTTGCACAATTGGATCAGAGACTAAAATTTTCTATTGCAAG
rJMSF008G04+ ATACTTCATTGCATTTTCCCTTGCACAATTGGATCAGAGACTAAAATTTTCTATTGCAAG
rJMSF050B04+ ATACTTCATTGCATTTTCCCTTGCACAATTGGATCAGAGACTAAAATTTTCTATTGCAAG
rJMFF011A17+ ATACTTCATTGCATTTTCCCTTGCACAATTGGATCAGAGACTAAAATTTTCTATTGCAAG
rJMSF005N21+ ATACTTCATTGCATTTTCCCTTGCACAATTGGATCAGAGACTAAAATTTTCTATTGCAAG
rJMFF016I17+ ATACTTCATTGCATTTTCCCTTGCACAATTGGATCAGAGACTAAAATTTTCTATTGCAAG
JMFN017M15- ATACTTCATTGCATTTTCCCTTGCACAATTGGATCAGAGACTAAAATTTTCTATTGCAAG
rJMSF011G24+ ATACTTCATTGCATTTTCCCTTGCACAATTGGATCAGAGACTAAAATTTTCTATTGCAAG
                      ____________________________________________________________
consensus ATACTTCATTGCATTTTCCCTTGCACAATTGGATCAGAGACTAAAATTTTCTATTGCAAG
 
. : . : . : . : . : . :
rJMFF008H17+ TTAGCTCGGAATCA
rJMSF008G04+ TTAGCTTGGAATCAACCTTC-AACTGAATTTT
rJMSF050B04+ TTAGCTTGGAATCAACCTTCAAACTGAATTTTTTGTTTTCCTGAATCAACTAACCGGTAC
rJMFF011A17+ TTAGCTTGGAATCAACCTTC-AACTGAATTTTTTGTTTTCCTGAATCAACTAACCGGTAC
rJMSF005N21+ TTAGCTCGGAATCAACCTTC-AACTGAATTTTTTGTTTTCCTGAATCAACTAACCGG
rJMFF016I17+ TTAGCTTGGAATCAACCTTC-AACTGAATTTTTTGTTTTCCTGAATCAACTAACCGGTAC
JMFN017M15- TTAGCTTGGAATCAACCTTC-AACTGAATTTTTTGTTTTCCTGAATCAACTAA
rJMSF011G24+ TTAGCTTGGAATCAACCTTC-AACTGAATTTTTTGTTTTCCTGAATCAACTAACCGGTAC
                      ____________________________________________________________
consensus TTAGCTTGGAATCAACCTTC-AACTGAATTTTTTGTTTTCCTGAATCAACTAACCGGTAC
 
. : . : . : . : . : . :
rJMSF050B04+ TGATCT
rJMFF011A17+ TGATCTTGTCAAAGGAATGAGCCGTAAATTT
rJMFF016I17+ TGATCTTGTCAAAGGAATGAGCCGTAAATTT
rJMSF011G24+ TGATCTTGTCAAAGGAATGAGCCGTAAATTTTGTGTTTATTTTTTACTTTCATCGAACTT
                      ____________________________________________________________
consensus TGATCTTGTCAAAGGAATGAGCCGTAAATTTTGTGTTTATTTTTTACTTTCATCGAACTT