Contig 012543:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010P09Sequence229009338 (4)776012543 (4)ref|XP_010042502.1|5e-94PREDICTED: solanesyl diphosphate synthase 1-like, partial [Eucalyptus grandis]
JMSF016D16Sequence493009338 (4)ref|XP_011098150.1|2e-17PREDICTED: probable solanesyl-diphosphate synthase 3, chloroplastic isoform X1 747012543 (4)ref|XP_010042502.1|8e-96PREDICTED: solanesyl diphosphate synthase 1-like, partial [Eucalyptus grandis]
JMSF024O16Sequence575009338 (4)ref|XP_011098150.1|2e-20PREDICTED: probable solanesyl-diphosphate synthase 3, chloroplastic isoform X1 773012543 (4)ref|XP_010042502.1|2e-93PREDICTED: solanesyl diphosphate synthase 1-like, partial [Eucalyptus grandis]
JMSF035B17Sequence680009338 (4)ref|XP_011098151.1|2e-54PREDICTED: probable solanesyl-diphosphate synthase 3, chloroplastic isoform X2 715012543 (4)ref|XP_010042502.1|9e-92PREDICTED: solanesyl diphosphate synthase 1-like, partial [Eucalyptus grandis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF035B17+ GTGATGTTGAGCTCGAGGAATACTTGATCNAGAGTTANTACAAAACGGCTTCCTT
rJMSF016D16+ CGACTGTGATGTTGAGCTCGAGGAATACTTGATCAAGAGTTACTACAAAACGGCTTCCTT
rJMSF024O16+ GTGATGNTGAGCTCGAGGAATACTTGATCAAGAGTTACTACAAAACGGCTTCCTT
rJMSF010P09+ GTGATGTTGAGCTCGAGGNATACTTGATCAAGAGTTACTACAAAACGGCTTCCTT
                      ____________________________________________________________
consensus CGACTGTGATGTTGAGCTCGAGGAATACTTGATCAAGAGTTACTACAAAACGGCTTCCTT
 
. : . : . : . : . : . :
rJMSF035B17+ GATCGCTGCTAGCACCAAAGGAGCTGCCATTTTTAGCGGAGTTGACAATGAGGTCTGCGA
rJMSF016D16+ GATCGCTGCTAGCACCAAAGGAGCTGCCATTTTTAGCGGAGTTGACAATGAGGTCTGCGA
rJMSF024O16+ GATCGCTGCTAGCACCAAAGGAGCTGCCATTTTTAGCGGAGTTGACAATGAGGTCTGCGA
rJMSF010P09+ GATCGCTGCTAGCACCAAAGGAGCTGCCATTTTTAGCGGAGTTGACAATGAGGTCTGCGA
                      ____________________________________________________________
consensus GATCGCTGCTAGCACCAAAGGAGCTGCCATTTTTAGCGGAGTTGACAATGAGGTCTGCGA
 
. : . : . : . : . : . :
rJMSF035B17+ GCAGATGTATCAGTACGGGAGGAATCTTGGTCTGTCCTTCCAGATTGTCGATGACATATT
rJMSF016D16+ GCAGATGTATCAGTACGGGAGGAATCTTGGTCTGTCCTTCCAGATTGTCGATGACATATT
rJMSF024O16+ GCAGATGTATCAGTACGGGAGGAATCTTGGTCTGTCCTTCCAGATTGTCGATGACATATT
rJMSF010P09+ GCAGATGTATCAGTACGGGAGGAATCTTGGTCTGTCCTTCCAGATTGTCGATGACATATT
                      ____________________________________________________________
consensus GCAGATGTATCAGTACGGGAGGAATCTTGGTCTGTCCTTCCAGATTGTCGATGACATATT
 
. : . : . : . : . : . :
rJMSF035B17+ GGACTTCACTCAATCAGCCGAGCAATTAGGGAAGCCGACTGGAAGTGACCTAGCAAAGGG
rJMSF016D16+ GGACTTCACTCAATCAGCCGAGCAATTAGGGAAGCCGACTGGAAGTGACCTAGCAAAGGG
rJMSF024O16+ GGACTTCACTCAATCAGCCGAGCAATTAGGGAAGCCGACTGGAAGTGACCTAGCAAAGGG
rJMSF010P09+ GGACTTCACTCAATCAGCCGAGCAATTAGGGAAGCCGACTGGAAGTGACCTAGCAAAGGG
                      ____________________________________________________________
consensus GGACTTCACTCAATCAGCCGAGCAATTAGGGAAGCCGACTGGAAGTGACCTAGCAAAGGG
 
. : . : . : . : . : . :
rJMSF035B17+ GAACCTCACTGCCCCGGTTATCTTCGCGCTAGAAAAGGAGCCAAAACTGAGGGATATGAT
rJMSF016D16+ GAACCTCACTGCCCCGGTTATCTTCGCGCTAGAAAAGGAGCCAAAACTGAGGGATATGAT
rJMSF024O16+ GAACCTCACTGCCCCGGTTATCTTCGCGCTAGAAAAGGAGCCAAAACTGAGGGATATGAT
rJMSF010P09+ GAACCTCACTGCCCCGGTTATCTTCGCGCTAGAAAAGGAGCCAAAACTGAGGGATATGAT
                      ____________________________________________________________
consensus GAACCTCACTGCCCCGGTTATCTTCGCGCTAGAAAAGGAGCCAAAACTGAGGGATATGAT
 
. : . : . : . : . : . :
rJMSF035B17+ TGAATCTGAGTTTTGTGAAACCGGGTCTCTTGAGGAGGCCATCAGCATTATCAAGAACTG
rJMSF016D16+ TGAATCTGAGTTTTGTGAAACCGGGTCTCTTGAGGAGGCCATCAGCATTATCAAGAACTG
rJMSF024O16+ TGAATCTGAGTTTTGTGAAACCGGGTCTCTTGAGGAGGCCATCAGCATTATCAAGAACTG
rJMSF010P09+ TGAATCTGAGTTTTGTGAAACCGGGTCTCTTGAGGAGGCCATCAGCATTATCAAGAACTG
                      ____________________________________________________________
consensus TGAATCTGAGTTTTGTGAAACCGGGTCTCTTGAGGAGGCCATCAGCATTATCAAGAACTG
 
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rJMSF035B17+ TGGAGGTATCGAGAGGGCTCAAGAGTTGGCGAGGGAGAAAGCTGATCTAGCGATTCAGAA
rJMSF016D16+ TGGAGGTATCGAGAGGGCTCAAGAGTTGGCGAGGGAGAAAGCTGATCTAGCGATTCAGAA
rJMSF024O16+ TGGAGGTATCGAGAGGGCTCAAGAGTTGGCGAGGGAGAAAGCTGATCTAGCGATTCAGAA
rJMSF010P09+ TGGAGGTATCGAGAGGGCTCAAGAGTTGGCGAGGGAGAAAGCTGATCTAGCGATTCAGAA
                      ____________________________________________________________
consensus TGGAGGTATCGAGAGGGCTCAAGAGTTGGCGAGGGAGAAAGCTGATCTAGCGATTCAGAA
 
. : . : . : . : . : . :
rJMSF035B17+ TCTCAAGTGTCTGCCTCCTAGTCCTTTCCGAATGGGGCTCGAGGAAATGGTGAAGTATAA
rJMSF016D16+ TCTCAAGTGTCTGCCTCCTAGTCCTTTCCGAATGGGGCTCGAGGAAATGGTGAAGTATAA
rJMSF024O16+ TCTCAAGTGTCTGCCTCCTAGTCCTTTCCGAATGGGGCTCGAGGAAATGGTGAAGTATAA
rJMSF010P09+ TCTCAAGTGTCTGCCTCCTAGTCCTTTCCGAATGGGGCTCGAGGAAATGGTGAAGTATAA
                      ____________________________________________________________
consensus TCTCAAGTGTCTGCCTCCTAGTCCTTTCCGAATGGGGCTCGAGGAAATGGTGAAGTATAA
 
. : . : . : . : . : . :
rJMSF035B17+ TCTCGAGAGAATTGAATAGAATCCAGATTAAAGCACAGTTCGAGAAATGTATCTGCTATG
rJMSF016D16+ TCTCGAGAGAATTGAATAGAATCCAGATTAAAGCACAGTTCGAGAAATGTATCTGCTATG
rJMSF024O16+ TCTCGAGAGAATTGAATAGAATCCAGATTAAAGCACAGTTCGAGAAATGTATCTGCTATG
rJMSF010P09+ TCTCGAGAGAATTGAATAGAATCCAGATTAAAGCACAGTTCGAGAAATGTATCTGCTATG
                      ____________________________________________________________
consensus TCTCGAGAGAATTGAATAGAATCCAGATTAAAGCACAGTTCGAGAAATGTATCTGCTATG
 
. : . : . : . : . : . :
rJMSF035B17+ AGTTGTAGAGATTGAAATCGAGCCTCGGGGAAGAGCCATTCTCGTTGAATTCTTTTACTT
rJMSF016D16+ AGTTGTAGAGATTGAAATCGAGCCTCGGGGAAGAGCCATTCTCGTTGAATTCTTTTACTT
rJMSF024O16+ AGTTGTAGAGATTGAAATCGAGCCTCGGGGAAGAGCCATTCTCGTTGAATTCTTTTACTT
rJMSF010P09+ AGTTGTAGAGATTGAAATCGAGCCTCGGGGAAGAGCCATTCTCGTTGAATTCTTTTACTT
                      ____________________________________________________________
consensus AGTTGTAGAGATTGAAATCGAGCCTCGGGGAAGAGCCATTCTCGTTGAATTCTTTTACTT
 
. : . : . : . : . : . :
rJMSF035B17+ CAACTGCTTCCTTCCTCATCTGCAAGTAATGAGCAGCTTTTGCTCCTCAATGGTTGTATA
rJMSF016D16+ CAACTGCTTCCTTCCTCATCTGCAAGTAATGAGCAGCTTTTGCTCCTCAATGGTTGTATA
rJMSF024O16+ CAACTGCTTCCTTCCTCATCTGCAAGTAATGAGCAGCTTTTGCTCCTCAATGGTTGTATA
rJMSF010P09+ CAACTGCTTCCTTCCTCATCTGCAAGTAATGAGCAGCTTTTGCTCCTCAATGGTTGTATA
                      ____________________________________________________________
consensus CAACTGCTTCCTTCCTCATCTGCAAGTAATGAGCAGCTTTTGCTCCTCAATGGTTGTATA
 
. : . : . : . : . : . :
rJMSF035B17+ CTCATAAAAGGTCATGAGCAATGACTCTAGCTCTTAGTATACCTCAATGTTATCATTATT
rJMSF016D16+ CTCATAAAAGGTCATGAGCAATGACTCTAGCTCTTAGTATACCTCAATGTTATCATTATT
rJMSF024O16+ CTCATAAAAGGTCATGAGCAATGACTCTAGCTCTTAGTATACCTCAATGTTATCATTATT
rJMSF010P09+ CTCATAAAAGGTCATGAGCAATGACTCTAGCTCTTAGTATACCTCAATGTTATCATTATT
                      ____________________________________________________________
consensus CTCATAAAAGGTCATGAGCAATGACTCTAGCTCTTAGTATACCTCAATGTTATCATTATT
 
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rJMSF016D16+ TTTTTTTCTTTNGTAT
rJMSF024O16+ TTTTTTTCTTTTGTATTGGCAAAGGAGAATGAATTTAAATGTTGTTGTAA
rJMSF010P09+ TTTTTTTCTTTTGTATTGNCAAAGGAGAGTNAATTCAAATGTNGTTGTAACAAATGATAT
                      ____________________________________________________________
consensus TTTTTTTCTTTTGTATTGGCAAAGGAGAGTGAATTTAAATGTTGTTGTAACAAATGATAT