Contig 012523:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN038O02Sequence641012523 (5)ref|XP_010107920.1|1e-101U-box domain-containing protein 26 [Morus notabilis] gb|EXC17320.1| U-box domain
JMFN040M06Sequence655012523 (5)ref|XP_004230770.1|3e-103PREDICTED: U-box domain-containing protein 26-like [Solanum lycopersicum]
JMSF004A17Sequence256013460 (7)139012523 (5)ref|XP_006346399.1|8e-04PREDICTED: U-box domain-containing protein 26-like [Solanum tuberosum]
JMSF008A24Sequence326013464 (3)ref|XP_006346399.1|8e-63PREDICTED: U-box domain-containing protein 26-like [Solanum tuberosum]772012523 (5)ref|XP_004230770.1|3e-117PREDICTED: U-box domain-containing protein 26-like [Solanum lycopersicum]
JMSF036F18Sequence580013464 (3)ref|XP_006346399.1|3e-64PREDICTED: U-box domain-containing protein 26-like [Solanum tuberosum]763012523 (5)ref|XP_004230770.1|2e-113PREDICTED: U-box domain-containing protein 26-like [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF036F18+ GTCGATGTTCCCCTTNCGGAGGCTGNATCCGTCATTGTGTTTTCCGATCCGG
rJMSF008A24+ CCCCTTCCGGAGGCTGAATCCGTCATTGTGTCTTCCGATCCGG
                      ____________________________________________________________
consensus GTCGATGTTCCCCTTCCGGAGGCTGAATCCGTCATTGTGTTTTCCGATCCGG
 
. : . : . : . : . : . :
JMFN040M06- GCTCTCAAATCCTTCAGTTGATGTCCGAATGAACT
JMFN038O02- GCTCTCAAATCCTTCAGTTGATGTCCGAATGAACT
rJMSF036F18+ TTCGAGTTGGTTACCTTGTGTCTCTGCTCTCAAATCCTTCAGTTGATGTCCGAATGAACT
rJMSF008A24+ TTCGAGTTGGTTACCTTGTGTCTCTGCTCTCAAATCCTTCAGTTGATGTCCGAATGAACT
                      ____________________________________________________________
consensus TTCGAGTTGGTTACCTTGTGTCTCTGCTCTCAAATCCTTCAGTTGATGTCCGAATGAACT
 
. : . : . : . : . : . :
JMFN040M06- CCGCCGCATTGATAGAGTCAGTTCTCTCCGGAACTAGATCGCCAGAGCTTAGAGCTCAAA
JMFN038O02- CCGCCGCATTGATAGAGTCAGTTCTCTCCGGAACTAGATCGCCAGAGCTTAGAGCTCAAA
rJMSF036F18+ CCGCCGCATTGATAGAGTCAGTTCTCTCCGGAACTAGATCGCCAGAGCTTAGAGCTCAAA
rJMSF008A24+ CCGCCGCATTGATAGAGTCAGTTCTCTCCGGAACTAGATCGCCAGAGCTTAGAGCTCAAA
                      ____________________________________________________________
consensus CCGCCGCATTGATAGAGTCAGTTCTCTCCGGAACTAGATCGCCAGAGCTTAGAGCTCAAA
 
. : . : . : . : . : . :
JMFN040M06- TCAGCAATGCCGATGAGATCTTCGAAGGAATCGTCGGAATTCTCAATTGTCCGTTGTCGT
JMFN038O02- TCAGCAATGCCGATGAGATCTTCGAAGGAATCGTCGGAATTCTCAATTGTCCGTTGTCGT
rJMSF036F18+ TCAGCAATGCCGATGAGATCTTCGAAGGAATCGTCGGAATTCTCAATTGTCCGTTGTCGT
rJMSF008A24+ TCAGCAATGCCGATGAGATCTTCGAAGGAATCGTCGGAATTCTCAATTGTCCGTTGTCGT
                      ____________________________________________________________
consensus TCAGCAATGCCGATGAGATCTTCGAAGGAATCGTCGGAATTCTCAATTGTCCGTTGTCGT
 
. : . : . : . : . : . :
JMFN040M06- ATTCTAGAGCCTTGAAGATCGGAGTCAAGGCACTATTCGCACTGTGTTTGGCAAAGCAAT
JMFN038O02- ATTCTAGAGCCTTGAAGATCGGAGTCAAGGCACTATTCGCACTGTGTTTGGCAAAGCAAT
rJMSF036F18+ ATTCTAGAGCCTTGAAGATCGGAGTCAAGGCACTATTCGCACTGTGTTTGGCAAAGCAAT
rJMSF008A24+ ATTCTAGAGCCTTGAAGATCGGAGTCAAGGCACTATTCGCACTGTGTTTGGCAAAGCAAT
                      ____________________________________________________________
consensus ATTCTAGAGCCTTGAAGATCGGAGTCAAGGCACTATTCGCACTGTGTTTGGCAAAGCAAT
 
. : . : . : . : . : . :
JMFN040M06- ACCGGCACAAGGCGGTGACTGCCGGAGCAGTGGAGGCGTTGATAGACAGGTTGCAGGATT
JMFN038O02- ACCGGCACAAGGCGGTGACTGCCGGAGCAGTGGAGGCGTTGATAGACAGGTTGCAGGATT
rJMSF036F18+ ACCGGCACAAGGCGGTGACTGCCGGAGCAGTGGAGGCGTTGATAGACAGGTTGCAGGATT
rJMSF008A24+ ACCGGCACAAGGCGGTGACTGCCGGAGCAGTGGAGGCGTTGATAGACAGGTTGCAGGATT
                      ____________________________________________________________
consensus ACCGGCACAAGGCGGTGACTGCCGGAGCAGTGGAGGCGTTGATAGACAGGTTGCAGGATT
 
. : . : . : . : . : . :
JMFN040M06- TCGACAAGTGTGACGCGGAGAGAGCGCTAGCTACGGTGGAGCTTCTATGCCGAATTCCAT
JMFN038O02- TCGACAAGTGTGACGCGGAGAGAGCGCTAGCTACGGTGGAGCTTCTATGCCGAATTCCAT
rJMSF036F18+ TCGACAAGTGTGACGCGGAGAGAGCGCTAGCTACGGTGGAGCTTCTATGCCGAATTCCAT
rJMSF008A24+ TCGACAAGTGTGACGCGGAGAGAGCGCTAGCTACGGTGGAGCTTCTATGCCGAATTCCAT
                      ____________________________________________________________
consensus TCGACAAGTGTGACGCGGAGAGAGCGCTAGCTACGGTGGAGCTTCTATGCCGAATTCCAT
 
. : . : . : . : . : . :
JMFN040M06- CCGGATGTGCGGCGTTCGCGGCCCACGCATTGACCGTCCCTCTGCTCGTGAAGATCATCC
rJMSF004A17+ GTGAAGATCATCN
JMFN038O02- CCGGATGTGCGGCGTTCGCGGCCCACGCATTGACCGTCCCTCTGCTCGTGAAGATCATCC
rJMSF036F18+ CCGGATGTGCGGCGTTCGCGGCCCACGCATTGACCGTCCCTCTGCTCGTGAAGATCATCC
rJMSF008A24+ CCGGATGTGCGGCGTTCGCGGCCCACGCATTGACCGTCCCTCTGCTCGTGAAGATCATCC
                      ____________________________________________________________
consensus CCGGATGTGCGGCGTTCGCGGCCCACGCATTGACCGTCCCTCTGCTCGTGAAGATCATCC
 
. : . : . : . : . : . :
JMFN040M06- TGAAGATCTCGCACCGGGCCACTGAGTACGCAGCCGGAGCTCTTCTCTCGATATGCTCCG
rJMSF004A17+ TGAAGATCTCGCACNGGGCCANTGAGTACGCAGCNGGAGCTCTTCTCTCGATATGCTCCG
JMFN038O02- TGAAGATCTCGCACCGGGCCACTGAGTACGCAGCCGGAGCTCTTCTCTCGATATGCTCCG
rJMSF036F18+ TGAAGATCTCGCACCGGGCCACTGAGTACGCAGCCGGAGCTCTTCTCTCGATATGCTCCG
rJMSF008A24+ TGAAGATCTCGCACCGGGCCACTGAGTACGCAGCCGGAGCTCTTCTCTCGATATGCTCCG
                      ____________________________________________________________
consensus TGAAGATCTCGCACCGGGCCACTGAGTACGCAGCCGGAGCTCTTCTCTCGATATGCTCCG
 
. : . : . : . : . : . :
JMFN040M06- CCTCCGAACAAGCTCAACGAGAGGCGGCGGCGGCGGGCGTGATGACTCAGTTGCTACTGC
rJMSF004A17+ CNTCCGANCAAGNTCAA
JMFN038O02- CCTCCGAACAAGCTCAACGAGAGGCGGCGGCGGCGGGCGTGATGACTCAGTTGCTACTGC
rJMSF036F18+ CCTCCGAACAAGCTCAACGAGAGGCGGCGGCGGCGGGCGTGATGACTCAGTTGCTACTGC
rJMSF008A24+ CCTCCGAACAAGCTCAACGAGAGGCGGCGGCGGCGGGCGTGATGACTCAGTTGCTACTGC
                      ____________________________________________________________
consensus CCTCCGAACAAGCTCAACGAGAGGCGGCGGCGGCGGGCGTGATGACTCAGTTGCTACTGC
 
. : . : . : . : . : . :
JMFN040M06- TCGTCCAAAGCGATTGTACAGAACGGGCGAAACGGAAAGCGCAAATGCTTCTGAAGCTGC
JMFN038O02- TCGTCCAAAGCGATTGTACAGAACGGGCGAAACGGAAAGCGCAAATGCTTCTGAAGCTGC
rJMSF036F18+ TCGTCCAAAGCGATTGTACAGAACGGGCGAAACGGAAAGCGCAAATGCTTCTGAAGCTGC
rJMSF008A24+ TCGTCCAAAGCGATTGTACAGAACGGGCGAAACGGAAAGCGCAAATGCTTCTGAAGCTGC
                      ____________________________________________________________
consensus TCGTCCAAAGCGATTGTACAGAACGGGCGAAACGGAAAGCGCAAATGCTTCTGAAGCTGC
 
. : . : . : . : . : . :
JMFN040M06- TTCGCGATTGTTGGCCGGAAGACTTCACTGGCATTTCAGACGATTACAATTGCAGCTACG
JMFN038O02- TTCGCGATTGTTGGCCGGAAGACTTCACTGGCATTTCAGACGATTACAATTGCAGCTACG
rJMSF036F18+ TTCGCGATTGTTGGCCGGAAGACTTCACTGCAATTTCAGACGATTACAATTGCAGCTACG
rJMSF008A24+ TTCGCGATTGTTGGCCGGAAGACTTCACTGCAATTTCAGACGATTACAATTGCAGCTACG
                      ____________________________________________________________
consensus TTCGCGATTGTTGGCCGGAAGACTTCACTGGCATTTCAGACGATTACAATTGCAGCTACG
 
. : . : . : . : . : . :
JMFN040M06- TCGTTCCCTTTTGATCATAC
JMFN038O02- TCGTTC
rJMSF036F18+ TCGTTCCCTTTTGATCATACTGTTATATACTCCGTAACATATAAATTCGGG
rJMSF008A24+ TCGTTCCCTTTTGATCATACTGTTATATACTCCGTAACATATAAATTCGGGTAGTCATTA
                      ____________________________________________________________
consensus TCGTTCCCTTTTGATCATACTGTTATATACTCCGTAACATATAAATTCGGGTAGTCATTA