Contig 012522:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF002F05Sequence395004972 (5)ref|XP_002267566.1|9e-19PREDICTED: guanine nucleotide-binding protein-like NSN1 [Vitis vinifera] emb|CB722012522 (4)ref|XP_009612778.1|2e-67PREDICTED: guanine nucleotide-binding protein-like 3 homolog [Nicotiana tomento
JMSF007L11Sequence377004972 (5)ref|XP_006407876.1|4e-10hypothetical protein EUTSA_v10020356mg [Eutrema salsugineum] gb|ESQ49329.1| hypo626012522 (4)ref|XP_009612778.1|1e-33PREDICTED: guanine nucleotide-binding protein-like 3 homolog [Nicotiana tomento
JMSF025F21Sequence658004972 (5)ref|XP_002267566.1|1e-69PREDICTED: guanine nucleotide-binding protein-like NSN1 [Vitis vinifera] emb|CB733012522 (4)ref|XP_009612778.1|5e-67PREDICTED: guanine nucleotide-binding protein-like 3 homolog [Nicotiana tomento
JMSF026O19Sequence643004972 (5)ref|XP_002267566.1|4e-61PREDICTED: guanine nucleotide-binding protein-like NSN1 [Vitis vinifera] emb|CB750012522 (4)ref|XP_009612778.1|7e-61PREDICTED: guanine nucleotide-binding protein-like 3 homolog [Nicotiana tomento

Alignment

This contig is upended


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rJMSF026O19+                   AAACAGCAGATGATTTTTTTTCAAAAGGTTGCTACTCTAAGGGGTAAACTT
                      ____________________________________________________________
consensus                      AAACAGCAGATGATTTTTTTTCAAAAGGTTGCTACTCTAAGGGGTAAACTT
 
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rJMSF002F05+           AAAAAGGGTGGCATTGTTGACATCGATGCAGCAGCTAGGATAGTTCTACATGACTGGAA
rJMSF025F21+           AAAAAGGGTGGCATTGTTGACATCGATGCAGCAGCTAGGATAGTTCTACATGACTGGAN
rJMSF026O19+          AAAAANGGGTGGCATTGTTGACATCGATGCAGCAGCTAGGATAGTTCTACATGACTGGAA
                      ____________________________________________________________
consensus             AAAAAAGGGTGGCATTGTTGACATCGATGCAGCAGCTAGGATAGTTCTACATGACTGGAA
 
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rJMSF002F05+          TGAGGGTAAAATTCCATACTACACAATGCCTCCAAAGCGGAATGAGGAAGAGCATTCAGA
rJMSF025F21+          TGAGGGTAAAATTCCATACTACACAATGCCTCCAAAGCGGAATGAGGAAGAGCATTCAGA
rJMSF026O19+          TGAGGGTAAAATTCCATACTACACAATGCCTCCAAAGCGGAATGAGGAAGAGCATTCAGA
rJMSF007L11+                                            AAGCGGAATGAGGAAGAGCATTCAGA
                      ____________________________________________________________
consensus             TGAGGGTAAAATTCCATACTACACAATGCCTCCAAAGCGGAATGAGGAAGAGCATTCAGA
 
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rJMSF002F05+          AGTGAAGGTTGTTTCAGAATTGGGGAAAGAATTCAATGTGGATGAAGTTTATGGCGGTGA
rJMSF025F21+          AGTGAAGGTTGTTTCAGAATTGGGGAAAGAATTCAATGTGGATGAAGTTTATGGCGGTGA
rJMSF026O19+          AGTGAAGGTTGTTTCAGAATTGGGGAAAGAATTCAATGTGGATGAAGTTTATGGCGGTGA
rJMSF007L11+          AGTGAAGGTTGTTTCAGAATTGGNGAAAGAATTCAATGTGGATGAAGTTTATGGCGGTGA
                      ____________________________________________________________
consensus             AGTGAAGGTTGTTTCAGAATTGGGGAAAGAATTCAATGTGGATGAAGTTTATGGCGGTGA
 
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rJMSF002F05+          ATCGTCGTTCATTGGCAGCCTCAAGTCTGTTAATGAATTCAACCCAGTTGAGGTTCCATC
rJMSF025F21+          ATCGTCGTTCATTGGCAGCCTCAAGTCTGTTAATGAATTCAACCCAGTTGAGGTTCCATC
rJMSF026O19+          ATCGTCGTTCATTGGCAGCCTCAAGTCTGTTAATGAATTCAACCCAGTTGAGGTTCCATC
rJMSF007L11+          ATCGTCGTTCATTGGCAGCCTCAAGTCTGTTANTGAATTCAACCCANTTGAGGTTCCATC
                      ____________________________________________________________
consensus             ATCGTCGTTCATTGGCAGCCTCAAGTCTGTTAATGAATTCAACCCAGTTGAGGTTCCATC
 
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rJMSF002F05+          TAACTGTCCGGTTAGTTTTGATGAGAAGATGCTTGAGGACAATCCACAACAACGCCCGAC
rJMSF025F21+          TAACTGTCCGGTTAGTTTTGATGAGAAGATGCTTGAGGACAATCCACAACAACGCCCGAC
rJMSF026O19+          TAACTGTCCGGTTAGTTTTGATGAGAAGATGCTTGAGGACAATCCACAACAACGCCCGAC
rJMSF007L11+          TAACTGTCCGGTTAGTTTTGATGNGNAGATNCTTGAGGNCAATCCNCANCAACGCCCGAC
                      ____________________________________________________________
consensus             TAACTGTCCGGTTAGTTTTGATGAGAAGATGCTTGAGGACAATCCACAACAACGCCCGAC
 
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rJMSF002F05+          TAACAGTGAAGGAGATCAACTCGTTGATAATGGAGATGATGAAGCGATGGGTTCGGGAGA
rJMSF025F21+          TAACAGTGAAGGAGATCAACTCGTTGATAATGGAGATGATGAAGCGATGGGTTCGGGAGA
rJMSF026O19+          TAACAGTGAAGGAGATCAACTCGTTGATAATGGAGATGATGAAGCGATGGGTTCGGGAGA
rJMSF007L11+          TAACAGTGAAGGAGATCAACTCGTTGATAATGGAGATGATGAAGCGATGGGTTCGGGAGA
                      ____________________________________________________________
consensus             TAACAGTGAAGGAGATCAACTCGTTGATAATGGAGATGATGAAGCGATGGGTTCGGGAGA
 
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rJMSF002F05+          AGAGGATGCAGGTACTACGGGAACCAAAAGTGCCAGTAGCAAACAAAACGAGAGGTTATA
rJMSF025F21+          AGAGGATGCAGGTACTACGGGAACCAAAAGTGCCAGTAGCAAACAAAACGAGAGGTTATA
rJMSF026O19+          AGAGGATGCAGGTACTACGGGAACCAAAAGTGCCAGTAGCAAACAAAACGAGAGGTTATA
rJMSF007L11+          AGAGGATGCAGGTACTNCGGGANCCAAAANTGCCANTAGCNANCAAAACGAGAGGTTATA
                      ____________________________________________________________
consensus             AGAGGATGCAGGTACTACGGGAACCAAAAGTGCCAGTAGCAAACAAAACGAGAGGTTATA
 
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rJMSF002F05+          CACTGAGGAGGGTATGCTGAATACCAAATTGGTAAAAGCGGAGAAAAAGAGGAGGAAAAA
rJMSF025F21+          CACTGAGGAGGGTATGCTGAATACCAAATTGGTAAAAGCGGAGAAAAAGAGGAGGAAAAA
rJMSF026O19+          CACTGAGGAGGGTATGCTGAATACCAAATTGGTAAAAGCGGAGAAAAAGAGGAGGAAAAA
rJMSF007L11+          CACTGNGGAGGGTATGCTGAATACCAAATTGGTAAAAGCGGAGAAAAAGAGGAGGAAAAA
                      ____________________________________________________________
consensus             CACTGAGGAGGGTATGCTGAATACCAAATTGGTAAAAGCGGAGAAAAAGAGGAGGAAAAA
 
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rJMSF002F05+          AGACAAGGAGTCGTCGATGATGGAAGATGACGATGATTATGATTTCAAGGTAGATTATGC
rJMSF025F21+          AGACAAGGAGTCGTCGATGATGGAAGATGACGATGATTATGATTTCAAGGTAGATTATGC
rJMSF026O19+          AGACAAGGAGTCGTCGATGATGGAAGATGACGATGATTATGATTTCAAGGTAGATTATGC
rJMSF007L11+          AGACAAGGAGTCGTCGATGATGGAAGATGACGATGACTATGATTTCAAGGTAGCTTANGC
                      ____________________________________________________________
consensus             AGACAAGGAGTCGTCGATGATGGAAGATGACGATGATTATGATTTCAAGGTAGATTATGC
 
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rJMSF002F05+          CAAAAGCAGC                                                  
rJMSF025F21+          CAAAAGCAGC                                                  
rJMSF026O19+          CAAAAGCAGCTCAGCAATGGATGTCAGTGAGAACATTGTCATTGCTGATGATAGTAATAG
rJMSF007L11+          CAAAAGCAGCTCANCAATGGATGTCAGTGAGANCATTGTCATTGCTGATGCTAGTAATNG
                      ____________________________________________________________
consensus             CAAAAGCAGCTCAGCAATGGATGTCAGTGAGAACATTGTCATTGCTGATGCTAGTAATAG
 
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rJMSF026O19+          AAACAGGTTTGAGCTACCTTCTGGGGTTACATTGGAGAATGAATAATGGGAAATTTTGCT
rJMSF007L11+          AAACAGGTTTGAGCTACCTTCTGGGGTTACATTGGAGAATGAATAATGGGAAATTTTGCT
                      ____________________________________________________________
consensus             AAACAGGTTTGAGCTACCTTCTGGGGTTACATTGGAGAATGAATAATGGGAAATTTTGCT
 
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rJMSF026O19+          TGTAGAATTTTTGAGGAAAGTTTTGAATTTCAGGTTGAT                     
rJMSF007L11+          TGTAGAATTTTNGAGGAAAGTTNTGAATTNCAGGTTGATTTAATGTATAAGGGATTGAGA
                      ____________________________________________________________
consensus             TGTAGAATTTTTGAGGAAAGTTTTGAATTTCAGGTTGATTTAATGTATAAGGGATTGAGA