Contig 012518:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007D08Sequence307024095781012518 (2)
JMSF035I05Sequence430005175 (7)gb|KJB18802.1|1e-57hypothetical protein B456_003G069700 [Gossypium raimondii]655012518 (2)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF035I05+ CAAGCGATCTGTTGATTAATATTTNGACCAGATTGTCCGTAAGATCTCNTANGCGGTTG
                      ____________________________________________________________
consensus CAAGCGATCTGTTGATTAATATTTNGACCAGATTGTCCGTAAGATCTCNTANGCGGTTG
 
. : . : . : . : . : . :
rJMSF035I05+ AAACGTGTNAGTAAATTTTTCTATAATTTAATTAAAAACGATCNTCAATTCATTCAAAAA
                      ____________________________________________________________
consensus AAACGTGTNAGTAAATTTTTCTATAATTTAATTAAAAACGATCNTCAATTCATTCAAAAA
 
. : . : . : . : . : . :
rJMSF035I05+ CACTTTGAATTTAGTCGAACTAAAACTGGTGGTGCTGTTATAGAGTTTAATTCTGCCGAT
                      ____________________________________________________________
consensus CACTTTGAATTTAGTCGAACTAAAACTGGTGGTGCTGTTATAGAGTTTAATTCTGCCGAT
 
. : . : . : . : . : . :
rJMSF035I05+ GGTGAAAGTGTGNTATTTTACTTGGTCTACAAAGATTTAGAGTCTAATGAGACTAGATGC
                      ____________________________________________________________
consensus GGTGAAAGTGTGNTATTTTACTTGGTCTACAAAGATTTAGAGTCTAATGAGACTAGATGC
 
. : . : . : . : . : . :
rJMSF035I05+ ATATACCTAGACATGCCAAATTCAAGATTATTAAGATACATCAAGTGTTGTGATGGTATG
                      ____________________________________________________________
consensus ATATACCTAGACATGCCAAATTCAAGATTATTAAGATACATCAAGTGTTGTGATGGTATG
 
. : . : . : . : . : . :
rJMSF035I05+ CTATGCCTATTTGTNTGTAAGGATGCTANAAATGAAATTAATGGTGATTCGACTGNTGNT
                      ____________________________________________________________
consensus CTATGCCTATTTGTNTGTAAGGATGCTANAAATGAAATTAATGGTGATTCGACTGNTGNT
 
. : . : . : . : . : . :
rJMSF035I05+ GTTTTCATATNGAATCCATCCNTTATGGAAATTATGGCCTTACCTTCAATTAAGGTGCCT
                      ____________________________________________________________
consensus GTTTTCATATNGAATCCATCCNTTATGGAAATTATGGCCTTACCTTCAATTAAGGTGCCT
 
. : . : . : . : . : . :
rJMSF035I05+ AACAAACCACCTATCGAAGNTGTTCTAGGTATGCGGTTNGCATNTGGGTTGACTAACAAC
rJMSF007D08+ AACCACCTATCGAAGTTGTTCTAGGTATGCGGTTTGCATTTGGGTTGACTAACAAC
                      ____________________________________________________________
consensus AACAAACCACCTATCGAAGTTGTTCTAGGTATGCGGTTTGCATTTGGGTTGACTAACAAC
 
. : . : . : . : . : . :
rJMSF035I05+ ATGGTCGGGAAAGTTATCATGCTTCTGAGTTTTGAAGATGTNAAGTCGGACTGTGATGAT
rJMSF007D08+ ATGGTCGGGAAAGTTATCATGCTTTTGAGTTTTGAAGATGTAAAGTCGGATTGTGATGAT
                      ____________________________________________________________
consensus ATGGTCGGGAAAGTTATCATGCTTTTGAGTTTTGAAGATGTAAAGTCGGATTGTGATGAT
 
. : . : . : . : . : . :
rJMSF035I05+ AGNTANGAAATTGTAATGGTTNGTAGCCAAGTAGACGATTCNTGGAATTGGAGGCAAATT
rJMSF007D08+ AGTTATGAAATTGTAATGGTTTGTAGCCAAGTAGACGATTCATGGAATTGGAGGCAAATT
                      ____________________________________________________________
consensus AGTTATGAAATTGTAATGGTTTGTAGCCAAGTAGACGATTCATGGAATTGGAGGCAAATT
 
. : . : . : . : . : . :
rJMSF035I05+ GATGCTGATCCACAAGCTCCTAAATATTTATTTAGGTCTGTATATTNTGGTGATTT
rJMSF007D08+ GATGCTGATCCACAAGCTCCTAAATATTTATTTAGGTCTGTATATTTTGGTGATTTTTAT
                      ____________________________________________________________
consensus GATGCTGATCCACAAGCTCCTAAATATTTATTTAGGTCTGTATATTTTGGTGATTTTTAT
 
. : . : . : . : . : . :
rJMSF007D08+ TTCAAAGGAAAATACTATTGGTACGGTTTGTCTGGATTGATTTGGTTTGACATGGATGAT
                      ____________________________________________________________
consensus TTCAAAGGAAAATACTATTGGTACGGTTTGTCTGGATTGATTTGGTTTGACATGGATGAT
 
. : . : . : . : . : . :
rJMSF007D08+ GAGGTTTTTGGTATGATTAATACTCCATTTGAATTGAATATTAATTTCGTTACGTTTACG
                      ____________________________________________________________
consensus GAGGTTTTTGGTATGATTAATACTCCATTTGAATTGAATATTAATTTCGTTACGTTTACG
 
. : . : . : . : . : . :
rJMSF007D08+ AATGAGACCATTGTGTGTGTTAGTCAACCCATTTTTCCCCCCGATGAACAGGGTAAGGTT
                      ____________________________________________________________
consensus AATGAGACCATTGTGTGTGTTAGTCAACCCATTTTTCCCCCCGATGAACAGGGTAAGGTT
 
. : . : . : . : . : . :
rJMSF007D08+ TATTTTGACATTTGGTTAATGGAGGAAAATAATAATATTTTTAATTGGCATAAACAAACA
                      ____________________________________________________________
consensus TATTTTGACATTTGGTTAATGGAGGAAAATAATAATATTTTTAATTGGCATAAACAAACA
 
. : . : . : . : . : . :
rJMSF007D08+ AGGATACTCGTCACTAGCATGGGTGAACAGTGGATGCCAGTAGGAATTTGGAATCCAAGT
                      ____________________________________________________________
consensus AGGATACTCGTCACTAGCATGGGTGAACAGTGGATGCCAGTAGGAATTTGGAATCCAAGT
 
. : . : . : . : . : . :
rJMSF007D08+ GGCCATTTACTAATGCTTGTGAGCTATTTGAATCCGGACTACTTCATGAATGACTACTTC
                      ____________________________________________________________
consensus GGCCATTTACTAATGCTTGTGAGCTATTTGAATCCGGACTACTTCATGAATGACTACTTC
 
. : . : . : . : . : . :
rJMSF007D08+ ATGAATGGTGAGATTGAAGATATTCAAGATAGTGATGTTCCTTTTTTCAAGAACGGGCCG
                      ____________________________________________________________
consensus ATGAATGGTGAGATTGAAGATATTCAAGATAGTGATGTTCCTTTTTTCAAGAACGGGCCG
 
. : . : . : . : . : . :
rJMSF007D08+ GATCTAATTTCTATAGATTTAGTAACTCAGGAAAAGAAGATTATTTATACAAGTCAAGAA
                      ____________________________________________________________
consensus GATCTAATTTCTATAGATTTAGTAACTCAGGAAAAGAAGATTATTTATACAAGTCAAGAA
 
. : . : . : . : . : . :
rJMSF007D08+ AAAAAGAGTGCCATTAATATTGTTTTGAATCCGAGTGGGGATCTTCAAGTTTGTAAGAAT
                      ____________________________________________________________
consensus AAAAAGAGTGCCATTAATATTGTTTTGAATCCGAGTGGGGATCTTCAAGTTTGTAAGAAT