Contig 012513:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005G09Sequence450012513 (2)ref|XP_004250216.1|3e-44PREDICTED: auxin-induced protein 6B-like [Solanum lycopersicum]349003525 (5)ref|XP_009619863.1|1e-20PREDICTED: DCC family protein At1g52590, chloroplastic [Nicotiana tomentosiform
JMSF005G11Sequence243003536 (3)ref|XP_009788569.1|5e-05PREDICTED: DNA ligase 1-like [Nicotiana sylvestris]510012513 (2)ref|XP_009763885.1|2e-47PREDICTED: auxin-induced protein 6B-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF005G09- GGGAATTCATTCTACCCTATTTCCAAGGTTTCTACAAATCTTATTC
                      ____________________________________________________________
consensus GGGAATTCATTCTACCCTATTTCCAAGGTTTCTACAAATCTTATTC
 
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JMSF005G09- TCTTCCGATCCATTCAATCTCTCTCATCTCCATCTATTTTCTAAGTTAATATCATCATGA
                      ____________________________________________________________
consensus TCTTCCGATCCATTCAATCTCTCTCATCTCCATCTATTTTCTAAGTTAATATCATCATGA
 
. : . : . : . : . : . :
JMSF005G09- TCAGTTCAAAGAGGCTCATTAAGCTGGCCAGAAGATGGCAGAAATTTGCTGCCATCCGAA
rJMSF005G11+ AAGATGGCAGAAATTTGCTGCCATCCGAA
                      ____________________________________________________________
consensus TCAGTTCAAAGAGGCTCATTAAGCTGGCCAGAAGATGGCAGAAATTTGCTGCCATCCGAA
 
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JMSF005G09- GAAAGAGGATTTCATTTCCAAGTCTATATGATGATTCAGATAGCTGCACTACTAGTACTT
rJMSF005G11+ GAAAGAGGATTTCATTTCCAAGTCTATATGATGATTCAGATAGCTGCACTACTAGTACTT
                      ____________________________________________________________
consensus GAAAGAGGATTTCATTTCCAAGTCTATATGATGATTCAGATAGCTGCACTACTAGTACTT
 
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JMSF005G09- CTTCTGCAGTTTACAAGGGTCATTTCACTATCTACACTGCTGATCAGAAGCGGTTTGTTG
rJMSF005G11+ CTTCTGCAGTTTACAAGGGTCATTTCACTATCTACACTGCTGATCAGAAGCGGTTTGTTG
                      ____________________________________________________________
consensus CTTCTGCAGTTTACAAGGGTCATTTCACTATCTACACTGCTGATCAGAAGCGGTTTGTTG
 
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JMSF005G09- TCCCTCTGTCATATCTCGAGAATCATATCATTAGGCAACTCTTAAGTATGTCTGAAGAAG
rJMSF005G11+ TCCCTCTGTCATATCTCGAGAATCATATCATTAGGCAACTCTTAAGTATGTCTGAAGAAG
                      ____________________________________________________________
consensus TCCCTCTGTCATATCTCGAGAATCATATCATTAGGCAACTCTTAAGTATGTCTGAAGAAG
 
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JMSF005G09- AATTTGGACTTCCAAGCGATGGGCCAATTACACTACCATGTGATGCAGTCTTCATGGACT
rJMSF005G11+ AATTTGGACTTCCAAGCGATGGGCCAATTACACTACCATGTGATGCAGTCTTCATGGACT
                      ____________________________________________________________
consensus AATTTGGACTTCCAAGCGATGGGCCAATTACACTACCATGTGATGCAGTCTTCATGGACT
 
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JMSF005G09- ACATCATTTCACTTCTTAGCCGAGGTTTATCTAGAGA
rJMSF005G11+ ACATCATTTCACTTCTTAGCCGAGGTTTATCTAGAGAACTTGAGAANGCACTGCTCGTTT
                      ____________________________________________________________
consensus ACATCATTTCACTTCTTAGCCGAGGTTTATCTAGAGAACTTGAGAANGCACTGCTCGTTT
 
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rJMSF005G11+ CACNTACTTCTCATCGCTGTTCATCAGCTCCGTTACTCCGAAATCAGGAATTGCTAGTTT
                      ____________________________________________________________
consensus CACNTACTTCTCATCGCTGTTCATCAGCTCCGTTACTCCGAAATCAGGAATTGCTAGTTT
 
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rJMSF005G11+ GCNCATATTAATCTCAATAAATTTTGTAATATAAATGAGGATATATATTAGTTGTAGCTC
                      ____________________________________________________________
consensus GCNCATATTAATCTCAATAAATTTTGTAATATAAATGAGGATATATATTAGTTGTAGCTC