Contig 012512:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009P08Sequence140005079 (5)745012512 (4)ref|XP_002299170.1|2e-84DNAJ heat shock N-terminal domain-containing family protein [Populus trichocarp
JMFF015L18Sequence568005079 (5)ref|XP_006347682.1|3e-28PREDICTED: dnaJ homolog subfamily C member 2-like [Solanum tuberosum]660012512 (4)gb|KJB67816.1|4e-80hypothetical protein B456_010G212600 [Gossypium raimondii]
JMSF005D10Sequence251012986 (7)ref|XP_004232878.1|5e-06PREDICTED: 50S ribosomal protein L21, mitochondrial [Solanum lycopersicum]450012512 (4)ref|XP_011020504.1|1e-26PREDICTED: dnaJ homolog subfamily C member 2-like [Populus euphratica] ref|XP_01
JMSF022H10Sequence666005079 (5)ref|XP_009780057.1|2e-28PREDICTED: dnaJ homolog subfamily C member 2-like [Nicotiana sylvestris]794012512 (4)ref|XP_002299170.1|9e-66DNAJ heat shock N-terminal domain-containing family protein [Populus trichocarp

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF022H10+ AGNATATGCANGGATACGTATGCTT
                      ____________________________________________________________
consensus AGNATATGCANGGATACGTATGCTT
 
. : . : . : . : . : . :
rJMSF022H10+ GTTGATAATGCNTATAAAAGAGACCCCAGAATTGTGAGAAGAAAAGAGGAGGAAAAAGCT
                      ____________________________________________________________
consensus GTTGATAATGCNTATAAAAGAGACCCCAGAATTGTGAGAAGAAAAGAGGAGGAAAAAGCT
 
. : . : . : . : . : . :
rJMSF022H10+ GAGAAGCAGAGGAAAAAGGAGGCCAAAGTTTTGGCAAAGAAATTGCAAGAGGAAGAAGCA
                      ____________________________________________________________
consensus GAGAAGCAGAGGAAAAAGGAGGCCAAAGTTTTGGCAAAGAAATTGCAAGAGGAAGAAGCA
 
. : . : . : . : . : . :
rJMSF022H10+ GCCAGAATTGCCGAAGAGGAGAGGCGTAGAAAAGAGGAAGAGGAAAAACGTGCTGCTGAA
                      ____________________________________________________________
consensus GCCAGAATTGCCGAAGAGGAGAGGCGTAGAAAAGAGGAAGAGGAAAAACGTGCTGCTGAA
 
. : . : . : . : . : . :
rJMSF022H10+ GCTGCTTTGCAGCAAAAGAAATTGAAAGAGAAAGAGAAGAAACTATTGCGCAAAGAGCGA
                      ____________________________________________________________
consensus GCTGCTTTGCAGCAAAAGAAATTGAAAGAGAAAGAGAAGAAACTATTGCGCAAAGAGCGA
 
. : . : . : . : . : . :
rJMSF022H10+ ACCCGTTTGCGTACAATTTCAGCACCTTTGTTGTCTGAGAACTTACTTGGCCTCACAAAT
                      ____________________________________________________________
consensus ACCCGTTTGCGTACAATTTCAGCACCTTTGTTGTCTGAGAACTTACTTGGCCTCACAAAT
 
. : . : . : . : . : . :
rJMSF022H10+ GATGATGTGGAACATCTATGTACTGCTTTAAATATTGATCAGCTGAAGAATTTGTGTGAT
                      ____________________________________________________________
consensus GATGATGTGGAACATCTATGTACTGCTTTAAATATTGATCAGCTGAAGAATTTGTGTGAT
 
. : . : . : . : . : . :
rJMSF022H10+ GGGATTGAGGGAAGGGTAGGGATTGCAAAAGCAGAGCTTCTCAGGGAGGCACTTGGACGT
                      ____________________________________________________________
consensus GGGATTGAGGGAAGGGTAGGGATTGCAAAAGCAGAGCTTCTCAGGGAGGCACTTGGACGT
 
. : . : . : . : . : . :
rJMSF022H10+ GATGACAACTCAAAGGATGAGAAACTGAATGAGAAGAAAAATGTTAAACATGAGAAGAAA
rJMFF009P08+ GATGAGAAACTGAATGAGAAGAAAAATGTTAANCATGAGAAGAAA
                      ____________________________________________________________
consensus GATGACAACTCAAAGGATGAGAAACTGAATGAGAAGAAAAATGTTAAACATGAGAAGAAA
 
. : . : . : . : . : . :
rJMSF022H10+ AATGTTCAACAAAATGGTAGTTCAGCAGCTAATGGACAGAACCCATTCAGCAGCAATGAG
rJMFF009P08+ AATGTTCAACAAAATGGTAGTTCAGCAGCTAATGGACAGAGCCCATTCAGCAGCAATGAG
rJMFF015L18+ AGCAGCAATGAG
                      ____________________________________________________________
consensus AATGTTCAACAAAATGGTAGTTCAGCAGCTAATGGACAGAGCCCATTCAGCAGCAATGAG
 
. : . : . : . : . : . :
rJMSF022H10+ AAAAAGGAGAGAGAGTGGACGAAAGAAGAAATTGATCTTTTGAGAAAGGGAGTGCAGAAA
rJMFF009P08+ AAAAAGGAGAGAGAGTGGACGAAAGAAGAAATTGATCTTTTGAGAAAGGGAGTGCAGAAA
rJMFF015L18+ AAAAAGGAGAGAGAGTGGACGAAAGAAGAAATTGATCTTTTGAGAAAGGGAGTGCAGAAA
                      ____________________________________________________________
consensus AAAAAGGAGAGAGAGTGGACGAAAGAAGAAATTGATCTTTTGAGAAAGGGAGTGCAGAAA
 
. : . : . : . : . : . :
rJMSF022H10+ TATCCTAAAGGAACGTCTCGGAGATGGGAAGTTATCTCGGAGTACATTGGTACTGGAAGG
rJMFF009P08+ TATCCTAAAGGAACGTCTCGGAGATGGGAAGTTATCTCGGAGTACATTGGTACTGGAAGG
rJMFF015L18+ TATCCTAAAGGAACGTCTCGGAGATGGGAAGTTATCTCGGAGTACATTGGTACTGGAAGG
                      ____________________________________________________________
consensus TATCCTAAAGGAACGTCTCGGAGATGGGAAGTTATCTCGGAGTACATTGGTACTGGAAGG
 
. : . : . : . : . : . :
rJMSF022H10+ ACAGTTGAGGAGATTCTAAAGGCCACAAAAACTGTTCTTCTTCAGAAACCAGACTCTGCT
rJMFF009P08+ ACAGTTGAGGAGATTCTAAAGGCCACAAAAACTGTTCTTCTTCAGAAACCAGACTCTGCT
rJMFF015L18+ ACAGTTGAGGAGATTCTAAAGGCCACAAAAACTGTTNTTCTTCAGAAACCAGACTCTGCT
                      ____________________________________________________________
consensus ACAGTTGAGGAGATTCTAAAGGCCACAAAAACTGTTCTTCTTCAGAAACCAGACTCTGCT
 
. : . : . : . : . : . :
rJMSF022H10+ AAAGCTTTCGACTCTTTCCTTGAGAAGAGAAAGCCAGCACAAACAAT
rJMFF009P08+ AAAGCTTTCGACTCTTTCCTTGAGAAGAGAAAGCCAGCACAAACAATTGCATCCCCTCTT
rJMFF015L18+ AAAGCTTTCGANTCTTTCCTTGAGAAGAGAAAGCCAGCACAAACAATTGCATCCCCTCTT
                      ____________________________________________________________
consensus AAAGCTTTCGACTCTTTCCTTGAGAAGAGAAAGCCAGCACAAACAATTGCATCCCCTCTT
 
. : . : . : . : . : . :
rJMFF009P08+ ACAACGAGGGAGGAAGTGGAGGGAACATCAAATGCCAACAAAACTGAAAACAATTCTGGC
rJMFF015L18+ ACAANGAGGGAGGAAGTGGAGGGAACATCAAATGCCAACAAAACTGAAAACAATTCTGGC
rJMSF005D10+ AATGCCAACAAAACTGAAAACAATTCTGGC
                      ____________________________________________________________
consensus ACAACGAGGGAGGAAGTGGAGGGAACATCAAATGCCAACAAAACTGAAAACAATTCTGGC
 
. : . : . : . : . : . :
rJMFF009P08+ AGTAAGGTGCCAAATTCACAGAGCTCTCCCAGCCAAAGTTCAAGCTGCCAAAACCCCCCT
rJMFF015L18+ AGTAAGGTGCCAAATTCACAGAGCTCTCCCAGCCAAAGTTCAAGCTGCCAAAACCCCCCT
rJMSF005D10+ AGTANGGTGCCAAATTCACAGAGCTCTCCCAGCCAAAGTTCAAGCTGCCAAAACCCCCCT
                      ____________________________________________________________
consensus AGTAAGGTGCCAAATTCACAGAGCTCTCCCAGCCAAAGTTCAAGCTGCCAAAACCCCCCT
 
. : . : . : . : . : . :
rJMFF009P08+ ACTGATGACCTTGCTGCAAATGTGGCTGAAGGAGATGCATGGTCTGTAGTTCAAGAAAGG
rJMFF015L18+ ACTGATGACCTTGCTGCAAATGTGGCTGAAGGAGATGCATGGTCTGTAGTTCAAGAAAGG
rJMSF005D10+ ACTGATGACCTTGCTGCAAATGTGGCTGAAGGAGATGCATGGTCTGTAGTTCAAGAAAGG
                      ____________________________________________________________
consensus ACTGATGACCTTGCTGCAAATGTGGCTGAAGGAGATGCATGGTCTGTAGTTCAAGAAAGG
 
. : . : . : . : . : . :
rJMFF009P08+ GCACTGGTTCAAGCTCTCAAAACCTTTCCAAAGGAAGTCAGCCAACGCTGGGAACGGGTT
rJMFF015L18+ GCACTGGTTCAAGCTCTCAAAACCTTTCCAAAGGAAGTCAGCCAACGCTGGGAACGGGTT
rJMSF005D10+ GCACTGGTTCAAGCTCTCAAAACCTTTCCAAAGGAAGTCAGCCAACGCTGGGAACGGGTT
                      ____________________________________________________________
consensus GCACTGGTTCAAGCTCTCAAAACCTTTCCAAAGGAAGTCAGCCAACGCTGGGAACGGGTT
 
. : . : . : . : . : . :
rJMFF009P08+ GCAGCTGCTGTTCCTGGGAAAACCGTGAACCAGTGTAAAAAGAAATTTACACTACTAAAA
rJMFF015L18+ GCAGCTGCTGTTCCTGGGAAAACCGTGAACCAGTGTAAAAAGAAATTTACACTACTAAAA
rJMSF005D10+ GCAGCTGCTGTTCCTGGGAAAACCGTGAACCAGTGTAAAAAGAAATTTACACTACTAAAA
                      ____________________________________________________________
consensus GCAGCTGCTGTTCCTGGGAAAACCGTGAACCAGTGTAAAAAGAAATTTACACTACTAAAA
 
. : . : . : . : . : . :
rJMFF009P08+ GAGAGCTTCAGGAACAAGAAAAATGCAGCATAATATGTTCTCTTCTATGCTGGATTGGAT
rJMFF015L18+ GAGAGCTTCAGGAACAAGAAAAATGCAGCATAATATGTTCTCTTCTATGCTGGATTGGAT
rJMSF005D10+ GAGAGCTTCNGGAACAAGAAAAATGCAGCATAATANGTTCTCTTCTATGCTGGATTGGAT
                      ____________________________________________________________
consensus GAGAGCTTCAGGAACAAGAAAAATGCAGCATAATATGTTCTCTTCTATGCTGGATTGGAT
 
. : . : . : . : . : . :
rJMFF009P08+ TCCAGTTTTCTGTCCCATTCTTTTTGCTTGATTTTGCAGA
rJMFF015L18+ TCCAGTTTTCTGTCCCATTCTTTTTGCTTGATTTTGCAGA
rJMSF005D10+ TCCAGTTTTCNGTCCCATTCTTTCTGCTTGATTTTGCAGAAGCTACGCTAGAATTCATTG
                      ____________________________________________________________
consensus TCCAGTTTTCTGTCCCATTCTTTTTGCTTGATTTTGCAGAAGCTACGCTAGAATTCATTG
 
. : . : . : . : . : . :
rJMSF005D10+ TNATCCCTTTACAGTTATTATTATTATTATTATGAGCTATAAAATTTACTTATTCAAATA
                      ____________________________________________________________
consensus TNATCCCTTTACAGTTATTATTATTATTATTATGAGCTATAAAATTTACTTATTCAAATA