| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006B12 | Sequence | 533 | 004561 (7) | ref|XP_011076924.1| | 1e-95 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Sesamum i | 772 | 012492 (8) | ref|XP_009773275.1| | 3e-86 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana |
| JMFF006D16 | Sequence | 496 | 004561 (7) | ref|XP_009773274.1| | 1e-54 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Nicotiana | 773 | 012492 (8) | ref|XP_009773275.1| | 1e-87 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana |
| JMFF012I07 | Sequence | 467 | 004561 (7) | ref|XP_009773274.1| | 8e-59 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Nicotiana | 741 | 012492 (8) | ref|XP_009773275.1| | 5e-86 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana |
| JMFF026B06 | Sequence | 473 | 004561 (7) | ref|XP_009773274.1| | 6e-61 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Nicotiana | 751 | 012492 (8) | ref|XP_009773275.1| | 3e-90 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana |
| JMFF031P17 | Sequence | 553 | 004561 (7) | ref|XP_011076924.1| | 9e-102 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Sesamum i | 779 | 012492 (8) | ref|XP_009773275.1| | 4e-90 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana |
| JMFF051K08 | Sequence | 581 | 004561 (7) | ref|XP_009773274.1| | 1e-83 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Nicotiana | 160 | 012492 (8) | |||
| JMFN012O05 | Sequence | 607 | 012492 (8) | ref|XP_009773275.1| | 6e-72 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana | |||||
| JMSF016I06 | Sequence | 523 | 004561 (7) | gb|KDO42035.1| | 9e-36 | hypothetical protein CISIN_1g0164182mg, partial [Citrus sinensis] | 722 | 012492 (8) | ref|XP_009773275.1| | 3e-82 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana |
This contig is upended
. : . : . : . : . : . :
rJMFF006D16+ TCTACGAGCTGGGG
____________________________________________________________
consensus TCTACGAGCTGGGG
. : . : . : . : . : . :
rJMFF026B06+ AATGTCTGGCATTGATGCTGTCTTACTGTACTATTTGAAAGCAGCTTTTGGTTTTGACAA
rJMSF016I06+ GTACTATTTGAAAGCAGCTTTTGGTTTTGACAA
rJMFF012I07+ GTCTGGCATTGATGCTGTCTTACTGTACTATTTGAAAGCAGCTTTTGGTTTTGACAA
rJMFF006D16+ AATGTCTGGCATTGATGCTGTCTTACTGTACTATTTGAAAGCAGCTTTTGGTTTTGACAA
rJMFF006B12+ AATGTCTGGCATTGATGCTGTCTTACTGCACTATTTGAAAGCAGCTTTTGGTTTTGACAA
rJMFF031P17+ AATGTCTGGCATTGATGCTGTCTTACTGTACTATTTGAAAGCAGCTTTTGGTTTTGACAA
____________________________________________________________
consensus AATGTCTGGCATTGATGCTGTCTTACTGTACTATTTGAAAGCAGCTTTTGGTTTTGACAA
. : . : . : . : . : . :
JMFN012O05- AGAAGTTTTGATGGTGGTGGGAGTAGGTGCAATTGTATCTCAGATCGT
rJMFF026B06+ AAATCAGTTGTCAGAAGTTTTGATGGTGGTGGGAGTAGGTGCAATTGTATCTCAGATCGT
rJMSF016I06+ AAATCAGTTGTCAGAAGTTTTGATGGTGGTGGGAGTAGGTGCAATTGTATCTCAGATCGT
rJMFF012I07+ AAATCAGTTGTCAGAAGTTTTGATGGTGGTGGGAGTAGGTGCAATTGTATCTCAGATCGT
rJMFF006D16+ AAATCAGTTGTCAGAAGTTTTGATGGTGGTGGGAGTAGGTGCAATTGTATCTCAGATCGT
rJMFF006B12+ AAATCAGTTGTCAGAAGTTTTGATGGTGGTGGGAGTAGGTGCAATTGTATCTCAGATCGT
rJMFF031P17+ AAATCAGTTGTCAGAAGTTTTGATGGTGGTGGGAGTAGGTGCAATTGTATCTCAGATCGT
____________________________________________________________
consensus AAATCAGTTGTCAGAAGTTTTGATGGTGGTGGGAGTAGGTGCAATTGTATCTCAGATCGT
. : . : . : . : . : . :
JMFN012O05- TGTGCTTCCGCTTGTCAATCCATTTGTTGGCGAGAAAGTAATACTTTGCATCGCCTTGTT
rJMFF026B06+ TGTGCTTCCGCTTGTCAATCCATTTGTTGGCGAGAAAGTAATACTTTGCATCGCCTTGTT
rJMSF016I06+ TGTGCTTCCGCTTGTCAATCCATTTGTTGGCGAGAAAGTAATACTTTGCATCGCCTTGTT
rJMFF012I07+ TGTGCTTCCGCTTGTCAATCCATTTGTTGGCGAGAAAGTAATACTTTGCATCGCCTTGTT
rJMFF006D16+ TGTGCTTCCGCTTGTCAATCCATTTGTTGGCGAGAAAGTAATACTTTGCATCGCCTTGTT
rJMFF006B12+ TGTGCTTCCGCTTGTCAATCCATTTGTTGGCGAGAAAGTAATACTTTGCATCGCCTTGTT
rJMFF031P17+ TGTGCTTCCGCTTGTCAATCCATTTGTTGGCGAGAAAGTAATACTTTGCATCGCCTTGTT
____________________________________________________________
consensus TGTGCTTCCGCTTGTCAATCCATTTGTTGGCGAGAAAGTAATACTTTGCATCGCCTTGTT
. : . : . : . : . : . :
JMFN012O05- GGCATCGATAGCATATTCATTGCTTTATGGATTCGCTTGGGCGGCTTGGGTGCCCTATTT
rJMFF026B06+ GGCATCGATAGCATATTCATTGCTTTATGGATTCGCTTGGGCGGCTTGGGTGCCCTATTT
rJMSF016I06+ GGCATCGATAGCATATTCATTGCTTTATGGATTCGCTTGGGCGGCTTGGGTGCCCTATTT
rJMFF012I07+ GGCATCGATAGCATATTCATTGCTTTATGGATTCGCTTGGGCGGCTTGGGTGCCCTATTT
rJMFF006D16+ GGCATCGATAGCATATTCATTGCTTTATGGATTCGCTTGGGCGGCTTGGGTGCCCTATTT
rJMFF006B12+ GGCATCGATAGCATATTCATTGCTTTATGGATTCGCTTGGGCGGCTTGGGTGCCCTATTT
rJMFF031P17+ GGCATCGATAGCATATTCATTGCTTTATGGATTCGCTTGGGCGGCTTGGGTGCCCTATTT
____________________________________________________________
consensus GGCATCGATAGCATATTCATTGCTTTATGGATTCGCTTGGGCGGCTTGGGTGCCCTATTT
. : . : . : . : . : . :
JMFN012O05- GAGCGTATCTTTTGGAGTCATCTATATCCTAGTTACACCGGCTACTTATGCTGTGATATC
rJMFF026B06+ GAGCGTATCTTTTGGAGTCATCTATATCCTAGTTACACCGGCTACTTATGCTGTGATATC
rJMSF016I06+ GAGCGTATCTTTTGGAGTCATCTATATCCTAGTTACACCGGCTACTTATGCTGTGATATC
rJMFF012I07+ GAGCGTATCTTTTGGAGTCATCTATATCCTAGTTACACCGGCTACTTATGCTGTGATATC
rJMFF006D16+ GAGCGTATCTTTTGGAGTCATCTATATCCTAGTTACACCGGCTACTTATGCTGTGATATC
rJMFF006B12+ GAGCGTATCTTTTGGAGTCATCTATATCCTAGTTACACCGGCTACTTATGCTGTGATATC
rJMFF031P17+ GAGCGTATCTTTTGGAGTCATCTATATCCTAGTTACACCGGCTACTTATGCTGTGATATC
____________________________________________________________
consensus GAGCGTATCTTTTGGAGTCATCTATATCCTAGTTACACCGGCTACTTATGCTGTGATATC
. : . : . : . : . : . :
JMFN012O05- TAGAGCATCGAGCTCCACTGACCAGGGAAAAGCGCAAGGCTTTGTTGCTGGCGTGCAAGC
rJMFF026B06+ TAGAGCATCGAGCTCCACTGACCAGGGAAAAGCGCAAGGCTTTGTTGCTGGCGTGCAAGC
rJMSF016I06+ TAGAGCATCGAGCTCCACTGACCAGGGAAAAGCGCAAGGCTTTGTTGCTGGCGTGCAAGC
rJMFF012I07+ TAGAGCATCGAGCTCCACTGACCAGGGAAAAGCGCAAGGCTTTGTTGCTGGCGTGCAAGC
rJMFF006D16+ TAGAGCATCGAGCTCCACTGACCAGGGAAAAGCGCAAGGCTTTGTTGCTGGCGTGCAAGC
rJMFF006B12+ TAGAGCATCGAGCTCCACTGACCAGGGAAAAGCGCAAGGCTTTGTTGCTGGCGTGCAAGC
rJMFF031P17+ TAGAGCATCGAGCTCCACTGACCAGGGAAAAGCGCAAGGCTTTGTTGCTGGCGTGCAAGC
____________________________________________________________
consensus TAGAGCATCGAGCTCCACTGACCAGGGAAAAGCGCAAGGCTTTGTTGCTGGCGTGCAAGC
. : . : . : . : . : . :
JMFN012O05- GATTGCAAGTTTGTTATCTCCAATCGGAATGACCCCGTTGACAACATGGTTTCTGTCCGA
rJMFF026B06+ GATTGCAAGTTTGTTATCTCCAATCGGAATGACCCCGTTGACAACATGGTTTCTGTCCGA
rJMSF016I06+ GATTGCAAGTTTGTTATCTCCAATCGGAATGACCCCGTTGACAACATGGTTTCTGTCCGA
rJMFF012I07+ GATTGCAAGTTTGTTATCTCCAATCGGAATGACCCCGTTGACAACATGGTTTCTGTCCGA
rJMFF006D16+ GATTGCAAGTTTGTTATCTCCAATCGGAATGACCCCGTTGACAACATGGTTTCTGTCCGA
rJMFF006B12+ GATTGCAAGTTTGTTATCTCCAATCGGAATGACCCCGTTGACAACATGGTTTCTGTCCGA
rJMFF031P17+ GATTGCAAGTTTGTTATCTCCAATCGGAATGACCCCGTTGACAACATGGTTTCTGTCCGA
____________________________________________________________
consensus GATTGCAAGTTTGTTATCTCCAATCGGAATGACCCCGTTGACAACATGGTTTCTGTCCGA
. : . : . : . : . : . :
JMFN012O05- TAATGCACCGTTTGACTGCAAGGGATTCGGGATCATCTGTGCTTCGTTGTGCATGGTCAT
rJMFF026B06+ TAATGCACCGTTTGACTGCAAGGGATTCGGGATCATCTGTGCTTCGTTGTGCATGGTCAT
rJMSF016I06+ TAATGCACCGTTTGACTGCAAGGGATTCGGGATCATCTGTGCTTCGTTGTGCATGGTCAT
rJMFF012I07+ TAATGCACCGTTTGACTGCAAGGGATTCGGGATCATCTGTGCTTCGTTGTGCATGGTCAT
rJMFF006D16+ TAATGCACCGTTTGACTGCAAGGGATTCGGGATCATCTGTGCTTCGTTGTGCATGGTCAT
rJMFF006B12+ TAATGCACCGTTTGACTGCAAGGGATTCGGGATCATCTGTGCTTCGTTGTGCATGGTCAT
rJMFF031P17+ TAATGCACCGTTTGACTGCAAGGGATTCGGGATCATCTGTGCTTCGTTGTGCATGGTCAT
____________________________________________________________
consensus TAATGCACCGTTTGACTGCAAGGGATTCGGGATCATCTGTGCTTCGTTGTGCATGGTCAT
. : . : . : . : . : . :
JMFN012O05- TGCACTGTGTTGCGCGTGCATGCTTAAACTCGATGCACCAGCGAAAAAGTCCTCAGAAGA
rJMFF026B06+ TGCACTGTGTTGCGCGTGCATGCTTAAACTCGATGCACCAGCGAAAAAGTCCTCAGAAGA
rJMSF016I06+ TGCACTGTGTTGCGCGTGCATGCTTAAACTCGATGCACCAGCGAAAAAGTCCTCAGAAGA
rJMFF012I07+ TGCACTGTGTTGCGCGTGCATGCTTAAACTCGATGCACCAGCGAAAAAGTCCTCAGAAGA
rJMFF006D16+ TGCACTGTGTTGCGCGTGCATGCTTAAACTCGATGCACCAGCGAAAAAGTCCTCAGAAGA
rJMFF006B12+ TGCACTGTGTTGCGCGTGCATGCTTAAACTCGATGCACCAGCGAAAAAGTCCTCAGAAGA
rJMFF031P17+ TGCACTGTGTTGCGCGTGCATGCTTAAACTCGATGCACCAGCGAAAAAGTCCTCAGAAGA
____________________________________________________________
consensus TGCACTGTGTTGCGCGTGCATGCTTAAACTCGATGCACCAGCGAAAAAGTCCTCAGAAGA
. : . : . : . : . : . :
JMFN012O05- CGATGCAGAGAGCATCGAGGCGCCGCTGCTGTCTTGAGTGAGAGTCCTCAGAAGAGAATG
rJMFF026B06+ CGATGCAGAGAGCATCGAGGCGCCGCTGCTGTCTTGAGTGAGAGTCCTCAGAAGAGAATG
rJMSF016I06+ CGATGCAGAGAGCATCGAGGCGCCGCTGCTGTCTTGAGTGAGAGTCCTCAGAAGAGAATG
rJMFF012I07+ CGATGCAGAGAGCATCGAGGCGCCGCTGCTGTCTTGAGTGAGAGTCCTCAGAAGAGAATG
rJMFF006D16+ CGATGCAGAGAGCATCGAGGCGCCGCTGCTGTCTTGAGTGAGAGTCCTCAGAAGAGAATG
rJMFF006B12+ CGATGCAGAGAGCATCGAGGCGCCGCTGCTGTCTTGAGTGAGAGTCCTCAGAAGAGAATG
rJMFF031P17+ CGATGCAGAGAGCATCGAGGCGCCGCTGCTGTCTTGAGTGAGAGTCCTCAGAAGAGAATG
____________________________________________________________
consensus CGATGCAGAGAGCATCGAGGCGCCGCTGCTGTCTTGAGTGAGAGTCCTCAGAAGAGAATG
. : . : . : . : . : . :
JMFN012O05- GAGAGAGCATTGAAGTGCCACTTCTGTGTTGACAAATTAGGCAGGCTAAGTGTCTTTGCA
rJMFF026B06+ GAGAGAGCATTGAAGTGCCACTTCTGTGTTGACAAATTAGGCAGGCTAAGTGTCTTTGCA
rJMSF016I06+ GAGAGAGCATTGAAGTGCCACTTCTGTGTTGACAAATTAGGCAGGCTAAGTGTCTTTGCA
rJMFF012I07+ GAGAGAGCATTGAAGTGCCACTTCTGTGTTGACAAATTAGGCAGGCTAAGTGTCTTTGCA
rJMFF006D16+ GAGAGAGCATTGAAGTGCCACTTCTGTGTTGACAAATTAGGCAGGCTAAGTGTCTTTGCA
rJMFF006B12+ GAGAGAGCATTGAAGTGCCACTTCTGTGTTGACAAATTAGGCAGGCTAAGTGTCTTTGCA
rJMFF031P17+ GAGAGAGCATTGAAGTGCCACTTCTGTGTTGACAAATTAGGCAGGCTAAGTGTCTTTGCA
rJMFF051K08+ CTTCTGTGTTGACAAATTAGGCAGGCTAAGTGTCTTTGCC
____________________________________________________________
consensus GAGAGAGCATTGAAGTGCCACTTCTGTGTTGACAAATTAGGCAGGCTAAGTGTCTTTGCA
. : . : . : . : . : . :
JMFN012O05- CCACCAAATTGCAGAATTT
rJMFF026B06+ CCACCAAATTGCAGAATTTAGCAGTAGTAGGAGAAGGATGTTAAATCTGCAGTTTCTGTA
rJMSF016I06+ CCACCAAATTGCAGAATTTAGCAGTAGTAGGAGAAGGATGTTAAATCTGCAGTTTCTGTA
rJMFF012I07+ CCACCAAATTGCAGAATTTAGCAGTAGTAGGAGAAGGATGTTAAATCTGCAGTTTCTGTA
rJMFF006D16+ CCACCAAATTGCAGAATTTAGCAGTAGTAGGAGAAGGATGTTAAATCTGCAGTTTCTGTA
rJMFF006B12+ CCACCAAATTGCAGAATTTAGCAGTAGTAGGAGAAGGATGTTAAATCTGCAGTTTCTGTA
rJMFF031P17+ CCACCAAATTGCAGAATTTAGCAGTAGTAGGAGAAGGATGTTAAATCTGCAGTTTCTGTA
rJMFF051K08+ CCCCCAAATTGCAGAATTTAGCAGTAGTAGGAGAAGGATGTTAAATCTGCAGTTTCTGTA
____________________________________________________________
consensus CCACCAAATTGCAGAATTTAGCAGTAGTAGGAGAAGGATGTTAAATCTGCAGTTTCTGTA
. : . : . : . : . : . :
rJMFF026B06+ TTCAACTGTCCAGTCACAAA
rJMSF016I06+ TTCAACTGTCCAGTCACAAAT
rJMFF012I07+ TTCAACTGTCCAGTCACAAAT
rJMFF006D16+ TTCAACTGTCCAGTCACAAATTCTCTAGTATTTTCATAT
rJMFF006B12+ TTCAACTGTCCAGTCACAAATTCTCTAGTATTTTCATAT
rJMFF031P17+ TTCAACTGTCCAGTCACAAATTCTCTAGTATTTTCATAT
rJMFF051K08+ TTCAACTGTCCAGTCACAAATTCTCTAGTATTTTCATATTAAATAAAAGTAGTAGTTTTT
____________________________________________________________
consensus TTCAACTGTCCAGTCACAAATTCTCTAGTATTTTCATATTAAATAAAAGTAGTAGTTTTT