Contig 012490:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031C20Sequence564009586 (3)ref|XP_011087403.1|8e-58PREDICTED: protein AUXIN RESPONSE 4 [Sesamum indicum]722012490 (4)ref|XP_009763067.1|4e-44PREDICTED: protein AUXIN RESPONSE 4 [Nicotiana sylvestris]
JMFF051F21Sequence556009586 (3)ref|XP_011087403.1|9e-57PREDICTED: protein AUXIN RESPONSE 4 [Sesamum indicum]496012490 (4)ref|XP_010255998.1|1e-06PREDICTED: protein AUXIN RESPONSE 4 [Nelumbo nucifera]
JMFN038E14Sequence579012490 (4)ref|XP_009763067.1|4e-37PREDICTED: protein AUXIN RESPONSE 4 [Nicotiana sylvestris]
JMSF052I13Sequence613009586 (3)ref|XP_011087403.1|1e-57PREDICTED: protein AUXIN RESPONSE 4 [Sesamum indicum]919012490 (4)ref|XP_009763067.1|2e-77PREDICTED: protein AUXIN RESPONSE 4 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF052I13+          CTTAAGGAGTGTCACCATTCTTGATAGTGAACCAAGTGCACCCGCATTGCCCTTGTGGGC
                      ____________________________________________________________
consensus             CTTAAGGAGTGTCACCATTCTTGATAGTGAACCAAGTGCACCCGCATTGCCCTTGTGGGC
 
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rJMSF052I13+          GTTCGGAGTGCCAGTAATCAGGGAGGCTGTTTTGCACTCTGGGTTCTTGTTCACGAGACT
                      ____________________________________________________________
consensus             GTTCGGAGTGCCAGTAATCAGGGAGGCTGTTTTGCACTCTGGGTTCTTGTTCACGAGACT
 
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rJMSF052I13+          CCTCGAAAAGTATTGTTGTGAATCAGTGAGTAAGTCAGATGCCGAGGCACATAGGATTCT
                      ____________________________________________________________
consensus             CCTCGAAAAGTATTGTTGTGAATCAGTGAGTAAGTCAGATGCCGAGGCACATAGGATTCT
 
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rJMSF052I13+          TTTGGCAGGAAGGGATGGCCGGAGAGCTATTGTTGGGATGGGGAAGAGGCTAAATTATAG
rJMFF031C20+                                                   GGAAGAGGCTAAATTATAG
                      ____________________________________________________________
consensus             TTTGGCAGGAAGGGATGGCCGGAGAGCTATTGTTGGGATGGGGAAGAGGCTAAATTATAG
 
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JMFN038E14-                                               CAAGGCACTGCCAATGCAAGTGAT
rJMSF052I13+          CCTCGATTTGGCCGAATGGAGTGCTTCTGATGGGGTCAAGGCACTGCCAATGCAAGTGAT
rJMFF031C20+          CCTCGATTTGGCCGAATGGAGTGCTTCTGATGGGGTCAAGGCACTGCCAATGCAAGTGAT
                      ____________________________________________________________
consensus             CCTCGATTTGGCCGAATGGAGTGCTTCTGATGGGGTCAAGGCACTGCCAATGCAAGTGAT
 
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JMFN038E14-           TTGGTCTACTGGCTCGTCGAAAGAATGGGGCGAAAAGGGGCAGCATATTGCTGCTTCACT
rJMSF052I13+          TTGGTCTACTGGCTCGTCGAAAGAATGGGGCGAAAAGGGGCAGCATATTGCTGCTTCACT
rJMFF031C20+          TTGGTCTACTGGCTCGTCGAAAGAATGGGGCGAAAAGGGGCAGCATATTGCTGCTTCACT
                      ____________________________________________________________
consensus             TTGGTCTACTGGCTCGTCGAAAGAATGGGGCGAAAAGGGGCAGCATATTGCTGCTTCACT
 
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JMFN038E14-           TCCCCGGGCAAAATTTGTAACTCATTCCGGTGGAAGGTGGCCCCAGGAACACAGTACTGA
rJMSF052I13+          TCCCCGGGCAAAATTTGTAACTCATTCCGGTGGAAGGTGGCCCCAGGAACACAGTACTGA
rJMFF031C20+          TCCCCGGGCAAAATTTGTAACTCATTCCGGTGGAAGGTGGCCCCAGGAACACAGTACTGA
                      ____________________________________________________________
consensus             TCCCCGGGCAAAATTTGTAACTCATTCCGGTGGAAGGTGGCCCCAGGAACACAGTACTGA
 
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JMFN038E14-           AGAGGTAGCTGAAAGCATTTATCGTTTCGTTTCCTCCTTACCCAAAACCATTAAACCGTC
rJMSF052I13+          AGAGGTAGCTGAAAGCATTTATCGTTTCGTTTCCTCCTTACCCAAAACCATTAAACCGTC
rJMFF031C20+          AGAGGTAGCTGAAAGCATTTATCGTTTCGTTTCCTCCTTACCCAAAACCATTAAACCGTC
rJMFF051F21+                                                   CCAAAACCATTAAACCGTC
                      ____________________________________________________________
consensus             AGAGGTAGCTGAAAGCATTTATCGTTTCGTTTCCTCCTTACCCAAAACCATTAAACCGTC
 
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JMFN038E14-           CGAGGAAGAACAGGTACCCGAGCATATTCAAAAGATGTTGAACGAAGCACAAAACTCGGG
rJMSF052I13+          CGAGGAAGAACAGGTACCCGAGCATATTCAAAAGATGTTGAACGAAGCACAAAACTCGGG
rJMFF031C20+          CGAGGAAGAACAGGTACCCGAGCATATTCAAAAGATGTTGAACGAAGCACAAAACTCGGG
rJMFF051F21+          CGAGGAAGAACAGGTACCCGAGCATATTCAAAAGATGTTGAACGAAGCACAAAACTCGGG
                      ____________________________________________________________
consensus             CGAGGAAGAACAGGTACCCGAGCATATTCAAAAGATGTTGAACGAAGCACAAAACTCGGG
 
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JMFN038E14-           TCATGATGGCCATCACCACCACCACCACCACGGTCATGGCCACGAGCACCACGATGGCCA
rJMSF052I13+          TCATGATGGCCATCACCACCACCACCACCACGGTCATGGCCACGAGCACCACGATGGCCA
rJMFF031C20+          TCATGATGGCCATCACCACCACCACCACCACGGTCATGGCCAC---CACCACGATGGCCA
rJMFF051F21+          TCATGATGGCCATCACCACCACCACCACCACGGTCATGGCCAC---CACCACGATGGCCA
                      ____________________________________________________________
consensus             TCATGATGGCCATCACCACCACCACCACCACGGTCATGGCCACGAGCACCACGATGGCCA
 
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JMFN038E14-           TGGCCATGGTCATGGTAACGCCCATGCTGGATATATGGATGCCTATGGGCTTGGACATGG
rJMSF052I13+          TGGCCATGGTCATGGTAACGCCCATGCTGGATATATGGATGCCTATGGGCTTGGACATGG
rJMFF031C20+          TGGCCATGGTCATGGTAACGCCCATGCTGGATATATGGATGCCTATGGGCTTGGACATGG
rJMFF051F21+          TGGCCATGGTCATGGTAACGCCCATGCTGGATATATGGATGCCTATGGGCTTGGACATGG
                      ____________________________________________________________
consensus             TGGCCATGGTCATGGTAACGCCCATGCTGGATATATGGATGCCTATGGGCTTGGACATGG
 
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JMFN038E14-           ATGGGGTATGTGATTCGCTTCAACTTATCGGGAAGTAGACTCTGATTGTTCTTGGAAGCC
rJMSF052I13+          ATGGGGTATGTGATTCGCTTCAACTTATCGGGAAGTAGACTCTGATTGTTCTTGGAAGCC
rJMFF031C20+          ATGGGGTATGTGATTCGCTTCAACTTATCGGGAAGTAGACTCTGATTGTTCTTGGAAGCC
rJMFF051F21+          ATGGGGTATGTGATTCGCTTCAACTTATCGGGAAGTAGACTTTGATTGTTCTTGGAAGCC
                      ____________________________________________________________
consensus             ATGGGGTATGTGATTCGCTTCAACTTATCGGGAAGTAGACTCTGATTGTTCTTGGAAGCC
 
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JMFN038E14-           AAACTAAGATGTACTGATATTTATCGCTTTTTGCTCTTTTTATGACACTAGTTTTACAAG
rJMSF052I13+          AAACTAAGATGTACTGATATTTATCGCTTTTTGCTCTTTTTATGACACTAGTTTTACAAG
rJMFF031C20+          AAACTAAGATGTACTGATATTTATCGCTTTTTGCTCTTTTTATGACACTAGTTTTACAAG
rJMFF051F21+          AAACTAAGATGTACTGATATTTATCGCTTTTTGCTCTTTTTATGACACTAGTTTTACAAG
                      ____________________________________________________________
consensus             AAACTAAGATGTACTGATATTTATCGCTTTTTGCTCTTTTTATGACACTAGTTTTACAAG
 
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JMFN038E14-           AAGTGTAATTGCTTGAAAGTGAAGGTCTATAGCAGACTGGGAGAGTAGTTGGTGTTTT  
rJMSF052I13+          AAGTGTAATTGCTTGAAAGTGAAGGTCTATAGCAGACTGGGAGAGTAGTTGGTGTTTTGA
rJMFF031C20+          AAGTGTAATTGCTTGAAAGTGAAGGTCTATAGCAGACTGGGAGAGTAGTTGGTGTTTTGA
rJMFF051F21+          AAGTGTAATTGCTTGAAAGTGAAGGTTTATAGCAGACTGGGAGAGTAGTTGGTGTTTTGA
                      ____________________________________________________________
consensus             AAGTGTAATTGCTTGAAAGTGAAGGTCTATAGCAGACTGGGAGAGTAGTTGGTGTTTTGA
 
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rJMSF052I13+          GTTCTCAAGGCCACTGATTATTGTGAGGTGCCTAACAATAGTTAAATGGTTACTTGGATT
rJMFF031C20+          GTTCTCAAGGCCACTGATTATTGTGAGGTGCCTAACAATAGTTAAATGGTTACTTGGATT
rJMFF051F21+          GTTTTCAAGGCCCCTGATTATTGTGAGGTGCCTAACAATAGTTAAATGGTTACTTGGATT
                      ____________________________________________________________
consensus             GTTCTCAAGGCCACTGATTATTGTGAGGTGCCTAACAATAGTTAAATGGTTACTTGGATT
 
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rJMSF052I13+          TGAACTATTCCTCATCTTT                                         
rJMFF031C20+          TGAACTATTCCTCATCTTTTCATAACTAGTTTTT                          
rJMFF051F21+          TGAACTATTCCTCATCTTTTCATAACTAGTTTTTTGAAATGCAAGTCATCCCAAAATCCT
                      ____________________________________________________________
consensus             TGAACTATTCCTCATCTTTTCATAACTAGTTTTTTGAAATGCAAGTCATCCCAAAATCCT