| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF051B18 | Sequence | 498 | 009460 (4) | ref|XP_008362638.1| | 169 | PREDICTED: uncharacterized protein LOC103426324 [Malus domestica] | 533 | 012486 (3) | gb|KEH28369.1| | 5e-30 | Cyclin 4 [Medicago truncatula] |
| JMSF036O11 | Sequence | 615 | 009460 (4) | ref|XP_004172976.1| | 1e-71 | PREDICTED: uncharacterized LOC101215534, partial [Cucumis sativus] | 758 | 012486 (3) | ref|XP_011080459.1| | 266 | PREDICTED: uncharacterized protein LOC105163715 [Sesamum indicum] |
| JMSF051A15 | Sequence | 664 | 009460 (4) | gb|KJB35660.1| | 2e-108 | hypothetical protein B456_006G1227002, partial [Gossypium raimondii] gb|KJB35661 | 756 | 012486 (3) | ref|XP_009769256.1| | 300 | PREDICTED: uncharacterized protein LOC104220139 [Nicotiana sylvestris] ref|XP_00 |
This contig is upended
. : . : . : . : . : . :
rJMSF051A15+ TCAATTCAGT
____________________________________________________________
consensus TCAATTCAGT
. : . : . : . : . : . :
rJMSF051A15+ GGTATCGCTTAGGGTGTGAAAATGGTAAACGGGAACCTATTTCAGGGGCTATGAAACCTG
rJMSF036O11+ TGAAACCTG
____________________________________________________________
consensus GGTATCGCTTAGGGTGTGAAAATGGTAAACGGGAACCTATTTCAGGGGCTATGAAACCTG
. : . : . : . : . : . :
rJMSF051A15+ CTTACGCACCGGAACCATTTGATGTTGGACAAATTTTGCAAGCTGATATGACGTTAGGGG
rJMSF036O11+ CTTACGCACCGGAACCATTTGATGTTGGACAAATTTTGCAAGCTGATATGACGTTAGGGG
____________________________________________________________
consensus CTTACGCACCGGAACCATTTGATGTTGGACAAATTTTGCAAGCTGATATGACGTTAGGGG
. : . : . : . : . : . :
rJMSF051A15+ TCGAGACTGTTACTGTAACGACCACCGGCCCTATTGAACCAGCTGCGGGATTGGGAAACT
rJMSF036O11+ TCGAGACTGTTACTGTAACGACCACCGGCCCTATTGAACCAGCTGCGGGATNGGGAAACT
____________________________________________________________
consensus TCGAGACTGTTACTGTAACGACCACCGGCCCTATTGAACCAGCTGCGGGATTGGGAAACT
. : . : . : . : . : . :
rJMSF051A15+ ATGTTGAAGCATTGGTGCGAAGGCATGAAACCGAATTTAATGTAGTTATTGTTCAAATGA
rJMSF036O11+ ATGTTGAAGCATTGGTGCGAAGGCATGAAACCGAATTTAATGTAGTTATTGTTCAGATGA
____________________________________________________________
consensus ATGTTGAAGCATTGGTGCGAAGGCATGAAACCGAATTTAATGTAGTTATTGTTCAGATGA
. : . : . : . : . : . :
rJMSF051A15+ ATGGGTCAGATCATCCGTCACAATCTATCCACGTATTGCACGTTGGAAAGATGAGAATGA
rJMSF036O11+ ATGGGTCAGATCATCCGTCACAATCTATCCACGTATTGCACGTTGGAAAGATGAGAATGA
____________________________________________________________
consensus ATGGGTCAGATCATCCGTCACAATCTATCCACGTATTGCACGTTGGAAAGATGAGAATGA
. : . : . : . : . : . :
rJMSF051A15+ AACTTTGTAAAGGGAAGACAACTTTGGCAAAGGAATACTATTCCACTTCAATGCAGCTCT
rJMSF036O11+ AACTTTGTAAAGGGAAGACAACTTTGGCAAAGGAATACTATTCCACTTCAATGCAGCTCT
rJMFF051B18+ TAAAGGGAAGACAACTTGGCAANAGGAATACTATTCCACTTCAATGCAGCTCT
____________________________________________________________
consensus AACTTTGTAAAGGGAAGACAACTTTGGCAAAGGAATACTATTCCACTTCAATGCAGCTCT
. : . : . : . : . : . :
rJMSF051A15+ GTGGAGTTAGAGGAGGCGGGAACGCTGCTGCACAGGCAGCATTTTGGCAAGCGAAAGAAG
rJMSF036O11+ GTGGAGTTAGAGGAGGCGGGAACGCTGCTGCACAGGCAGCATTTTGGCAAGCGAAAGAAG
rJMFF051B18+ GTGGAGTTAGAGGAGGCGGGAACGCTGCTGCACAGGCAGCATTTTGGCAAGCGAAAGAAG
____________________________________________________________
consensus GTGGAGTTAGAGGAGGCGGGAACGCTGCTGCACAGGCAGCATTTTGGCAAGCGAAAGAAG
. : . : . : . : . : . :
rJMSF051A15+ GGCTGTCGTTTGTTTTAGCGTTTGAAACAGAGCGCGAGAGAAATGCAGCTATTATGCTGG
rJMSF036O11+ GGCTGTCGTTTGTTTTAGCGTTTGAAACAGAGCGCGAGAGAAATGCAGCTATTATGCTGG
rJMFF051B18+ GGCTGTCGTTTGTTTTAGCGTTTGAAACAGAGCGCGAGAGAAATGCAGCTATTATTCTGG
____________________________________________________________
consensus GGCTGTCGTTTGTTTTAGCGTTTGAAACAGAGCGCGAGAGAAATGCAGCTATTATGCTGG
. : . : . : . : . : . :
rJMSF051A15+ CAAGGCGGTTTTCATTCGACTGCAACATCACACTTGCAGGCCCCGACGATAGAGCTGCTC
rJMSF036O11+ CAAGGCGGTTTTCATTCGACTGCAACATCACACTTGCAGGCCCCGACGATAGAGCTGCTC
rJMFF051B18+ CAAGGCGGTTTTCATTCGACTGCAACATCACACTTGCAGGCCCCGACGATAGAGCTGCTC
____________________________________________________________
consensus CAAGGCGGTTTTCATTCGACTGCAACATCACACTTGCAGGCCCCGACGATAGAGCTGCTC
. : . : . : . : . : . :
rJMSF051A15+ TGTGAGCTTTGGGCGTTGTTCGGAACAAACTGTAATTACACTGATTCTACATTGTGCCCT
rJMSF036O11+ TGTGAGCTTTGGGCGTTGTTCGGAACAAACTGTAATTACACTGATTCTACATTGTGCCCT
rJMFF051B18+ TGTGAGCTTTGGGCGTTGTTCGGAACAAACTGTAATTACACTGATTCTACATTGTGCCCT
____________________________________________________________
consensus TGTGAGCTTTGGGCGTTGTTCGGAACAAACTGTAATTACACTGATTCTACATTGTGCCCT
. : . : . : . : . : . :
rJMSF051A15+ GTATCTATAGGCCTGCATTCATGCATCCAAATTAGGGTTTGTCTACAAAATTTGAGTTTT
rJMSF036O11+ GTATCTATAGGCCTGCATTCATGCATCCAAATTAGGGTTTGTCTACAAAATTTGAGTTTT
rJMFF051B18+ GTATCTATAGGCCTGCATTCATGCATCCAAATTAGGGTTTGTCTACAAAATTTGAGTTTT
____________________________________________________________
consensus GTATCTATAGGCCTGCATTCATGCATCCAAATTAGGGTTTGTCTACAAAATTTGAGTTTT
. : . : . : . : . : . :
rJMSF051A15+ CAATAACCTTCATCACTATTATTATTTTCATCTTCTTGGTCATTCTTTTATTGGGTTCCA
rJMSF036O11+ CAATAACCTTCATCACTATTATTATTTTCATCTTCTTGGTCATTCTTTTATTGGGTTCCA
rJMFF051B18+ CAATAACCTTCATCACTATTATTATTTTCATCTTCTTGGTCATTCTTTTATTGGGTTCCA
____________________________________________________________
consensus CAATAACCTTCATCACTATTATTATTTTCATCTTCTTGGTCATTCTTTTATTGGGTTCCA
. : . : . : . : . : . :
rJMSF051A15+ TTTGATTGTAATGATCTCTGGGTT
rJMSF036O11+ TTTGATTGTAATGATCTCTGGGTTTGTTCTTCCCGGCTGAACAACTAATGATATTGAGAA
rJMFF051B18+ TTTGATTGTAATGATCTCTGGGTTTGTTCTTCCCGGCTGAACAACTAATGATATTGAGAA
____________________________________________________________
consensus TTTGATTGTAATGATCTCTGGGTTTGTTCTTCCCGGCTGAACAACTAATGATATTGAGAA
. : . : . : . : . : . :
rJMSF036O11+ GAATTCTTTGTACTGGA
rJMFF051B18+ GAATTCTTTGTACTGGAAAAAAAAAAAAAAAAACTCGCCAGGGTGATCCGCCATAAGGGC
____________________________________________________________
consensus GAATTCTTTGTACTGGAAAAAAAAAAAAAAAAACTCGCCAGGGTGATCCGCCATAAGGGC