| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF044F15 | Sequence | 639 | 012478 (8) | ref|XP_004245638.1| | 8e-118 | PREDICTED: replication factor C subunit 2 [Solanum lycopersicum] | 609 | 012478 (8) | ref|XP_009769681.1| | 9e-49 | PREDICTED: replication factor C subunit 2 [Nicotiana sylvestris] |
| JMFF050B20 | Sequence | 625 | 012478 (8) | ref|XP_004245638.1| | 1e-116 | PREDICTED: replication factor C subunit 2 [Solanum lycopersicum] | 562 | 012478 (8) | emb|CAA06481.1| | 2e-27 | replication factor C/activator 1 subunit [Cicer arietinum] |
| JMSF009A05 | Sequence | 274 | 012478 (8) | emb|CDP09794.1| | 3e-43 | unnamed protein product [Coffea canephora] | 788 | 012478 (8) | ref|XP_009621420.1| | 1e-137 | PREDICTED: replication factor C subunit 2 [Nicotiana tomentosiformis] |
| JMSF039B15 | Sequence | 660 | 012478 (8) | ref|XP_009621420.1| | 1e-120 | PREDICTED: replication factor C subunit 2 [Nicotiana tomentosiformis] | 899 | 012478 (8) | ref|XP_009621420.1| | 5e-151 | PREDICTED: replication factor C subunit 2 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMSF039B15- GG
____________________________________________________________
consensus GG
. : . : . : . : . : . :
JMFF050B20- GGGGAGGGTTTTCGCTTCAAAGCTCTAGGGATCGCAT
JMSF039B15- TTTCCCTCCAAATTGAAGAATTTGGGGAGGGTTTTCGCTTCAAAGCTCTAGGGATCGCAT
JMFF044F15- GGGGAGGGTTTTCGCTTCAAAGCTCTAGGGATCGCAT
____________________________________________________________
consensus TTTCCCTCCAAATTGAAGAATTTGGGGAGGGTTTTCGCTTCAAAGCTCTAGGGATCGCAT
. : . : . : . : . : . :
JMFF050B20- AACAGCCATTCTTTCAACCCAACCATCCATGGCGTCATCTTCTTCTGTTGCGTCAGGCCC
JMSF009A05- CTTTCAACCCAACCATCCATGGCGTCATCTTCTTCTGTTGCGTCAGGCCC
JMSF039B15- AACAGCCATTCTTTCAACCCAACCATCCATGGCGTCATCTTCTTCTGTTGCGTCAGGCCC
JMFF044F15- AACAGCCATTCTTTCAACCCAACCATCCATGGCGTCATCTTCTTCTGTTGCGTCAGGCCC
____________________________________________________________
consensus AACAGCCATTCTTTCAACCCAACCATCCATGGCGTCATCTTCTTCTGTTGCGTCAGGCCC
. : . : . : . : . : . :
JMFF050B20- TGACATCCCATGGGTCGAGAAGTACAGGCCCACCAAGGTGGCCGACATCGTCGGCAACGA
JMSF009A05- TGACATCCCATGGGTCGAGAAGTACAGGCCCACCAAGGTGGCCGACATCGTCGGCAACGA
JMSF039B15- TGACATCCCATGGGTCGAGAAGTACAGGCCCACCAAGGTGGCCGACATCGTCGGCAACGA
JMFF044F15- TGACATCCCATGGGTCGAGAAGTACAGGCCCACCAAGGTGGCCGACATCGTCGGCAACGA
____________________________________________________________
consensus TGACATCCCATGGGTCGAGAAGTACAGGCCCACCAAGGTGGCCGACATCGTCGGCAACGA
. : . : . : . : . : . :
JMFF050B20- AGACGCCGTCGCCAGGCTCCAAGTCATCGCCCGTGACGGAAACATGCCCAATCTCATTTT
JMSF009A05- AGACGCCGTCGCCAGGCTCCAAGTCATCGCCCGTGACGGAAACATGCCCAATCTCATTTT
JMSF039B15- AGACGCCGTCGCCAGGCTCCAAGTCATCGCCCGTGACGGAAACATGCCCAATCTCATTTT
JMFF044F15- AGACGCCGTCGCCAGGCTCCAAGTCATCGCCCGTGACGGAAACATGCCCAATCTCATTTT
____________________________________________________________
consensus AGACGCCGTCGCCAGGCTCCAAGTCATCGCCCGTGACGGAAACATGCCCAATCTCATTTT
. : . : . : . : . : . :
JMFF050B20- AGCTGGTCCTCCTGGCACTGGTAAAACTACCAGTATACTTGCTCTTGCTCATGAACTTCT
JMSF009A05- AGCTGGTCCTCCTGGCACTGGTAAAACTACCAGTATACTTGCTCTTGCTCATGAACTTCT
JMSF039B15- AGCTGGTCCTCCTGGCACTGGTAAAACTACCAGTATACTTGCTCTTGCTCATGAACTTCT
JMFF044F15- AGCTGGTCCTCCTGGCACTGGTAAAACTACCAGTATACTTGCTCTTGCTCATGAACTTCT
____________________________________________________________
consensus AGCTGGTCCTCCTGGCACTGGTAAAACTACCAGTATACTTGCTCTTGCTCATGAACTTCT
. : . : . : . : . : . :
JMFF050B20- GGGGCCAAATTTGAAGGAAGCAGTTCTGGAGCTAAATGCATCAGATGATAGGGGGATTGA
JMSF009A05- GGGGCCAAATTTGAAGGAAGCAGTTCTGGAGCTAAATGCATCA
JMSF039B15- GGGGCCAAATTTGAAGGAAGCAGTTCTGGAGCTAAATGCATCAGATGATAGGGGGATTGA
JMFF044F15- GGGGCCAAATTTGAAGGAAGCAGTTCTGGAGCTAAATGCATCAGATGATAGGGGGATTGA
rJMSF039B15+ GGGGGATTGA
____________________________________________________________
consensus GGGGCCAAATTTGAAGGAAGCAGTTCTGGAGCTAAATGCATCAGATGATAGGGGGATTGA
. : . : . : . : . : . :
JMFF050B20- TGTCGTTAGAAACAAGATTAAGATGTTTGCTCAAAAGAAAGTCACGCTTCCCCC--TGGC
JMSF039B15- TGTCGTTAGAAACAAGATTAAGATGTTTGCTCAAAAGAAAGTCACGCTTCCCCC--TGGC
JMFF044F15- TGTCGTTAGAAACAAGATTAAGATGTTTGCTCAAAAGAAAGTCACGCTTCCCCC--TGGC
rJMSF039B15+ TGTCGTTAGAAACAAGATTAAGATGTTTGCTCAAAAGAAAGTCACGCTTCCCCCCTGGNC
____________________________________________________________
consensus TGTCGTTAGAAACAAGATTAAGATGTTTGCTCAAAAGAAAGTCACGCTTCCCCC--TGGC
. : . : . : . : . : . :
JMFF050B20- CGCCATAAGATTATAA-TTTTGGATGAAGCTGACAGCATGACAACTGGAGCTCAACAAGC
JMSF039B15- CGCCATAAGATTATAA-TTTTGGATGAAGCTGACAGCATGACAACTGGAGCTCAACAAGC
JMFF044F15- CGCCATAAGATTATAA-TTTTGGATGAAGCTGACAGCATGACAACTGGAGCTCAACAAGC
rJMSF009A05+ TTGGATGAAGCTGACAGCATGACAACTGGAGCTCAACAAGC
rJMSF039B15+ CGCCATAAGATTATAATTTTTGGATGAAGCTGACAGCATGACAACTGGAGCTCAACAAGC
____________________________________________________________
consensus CGCCATAAGATTATAA-TTTTGGATGAAGCTGACAGCATGACAACTGGAGCTCAACAAGC
. : . : . : . : . : . :
JMFF050B20- CTTAAGGAGGACGATGGAAATATATTCTAACTCTACTCGCTTTGGTCTTGCCTGCAACAC
JMSF039B15- CTTAAGGAGGACGATGGAAATATATTCTAACTCTACTCGCTTTGGTCTTGCCTGCAACAC
JMFF044F15- CTTAAGGAGGACGATGGAAATATATTCTAACTCTACTCGCTTTGGTCTTGCCTGCAACAC
rJMSF009A05+ CTTAAGGAGGACGATGGAAATATATTCTAACTCTACTCGCTTTGGTCTTGCCTGCAACAC
rJMSF039B15+ CTTAAGGAGGACGATGGAAATATATTCTAACTCTACTCGCTTTGGTCTTGCCTGCAACAC
____________________________________________________________
consensus CTTAAGGAGGACGATGGAAATATATTCTAACTCTACTCGCTTTGGTCTTGCCTGCAACAC
. : . : . : . : . : . :
JMFF050B20- TTCTTCTAAAGTCATTGAGCCTATCCAGAGTAGATGTGCCCTAGTCCGGTTTGGCAGATT
JMSF039B15- TTCTTCTAAAGTCATTGAGCCTATCCAGAGTAGATGTGCCCTAGTCCGGTTTGGCAGATT
JMFF044F15- TTCTTCTAAAGTCATTGAGCCTATCCAGAGTAGATGTGCCCTAGTCCGGTTTGGCAGATT
rJMSF009A05+ TTCTTCTAAAGTCATTGAGCCTATCCAGAGTAGATGTGCCCTAGTCCGGTTTGGCAGATT
rJMSF039B15+ TTCTTCTAAAGTCATTGAGCCTATCCAGAGTAGATGTGCCCTAGTCCGGTTTGGCAGATT
____________________________________________________________
consensus TTCTTCTAAAGTCATTGAGCCTATCCAGAGTAGATGTGCCCTAGTCCGGTTTGGCAGATT
. : . : . : . : . : . :
JMFF050B20- ATCTGATNCAGAGATCCTTGGACGACTTATGGTAGTGGTTGCTGCAGAAA
JMSF039B15- ATCTGATCAAGAGATCCTTGGACGACTTATGGTAGTGGTTGCTGCAGAAA
JMFF044F15- ATCTGATCAAGAGATCCTTGGACGACTTATGGTAGTGGTTGCTGCAGAAA
rJMSF009A05+ ATCTGATCAAGAGATCCTTGGACGACTTATGGTAGTGGTTGCTGCAGAAAAGGTTCCTTA
rJMSF039B15+ ATCTGATCAAGAGATCCTTGGACGACTTATGGTAGTGGTTGCTGCAGAAAAGGTTCCTTA
____________________________________________________________
consensus ATCTGATCAAGAGATCCTTGGACGACTTATGGTAGTGGTTGCTGCAGAAAAGGTTCCTTA
. : . : . : . : . : . :
rJMSF009A05+ TGTACCAGAAGGTCTTGAGGCAATTATATTTACTGCTGATGGAGATATGAGACAGGCTTT
rJMSF039B15+ TGTACCAGAAGGTCTTGAGGCAATTATATTTACTGCTGATGGAGATATGAGACAGGCTTT
____________________________________________________________
consensus TGTACCAGAAGGTCTTGAGGCAATTATATTTACTGCTGATGGAGATATGAGACAGGCTTT
. : . : . : . : . : . :
rJMSF009A05+ AAATAACCTGCAAGCGACATACAGTGGATTCGGGTTCATCAACCAAGAAAATGTTTTCAA
rJMSF039B15+ AAATAACCTGCAAGCGACATACAGTGGATTCGGGTTCATCAACCAAGAAAATGTTTTCAA
____________________________________________________________
consensus AAATAACCTGCAAGCGACATACAGTGGATTCGGGTTCATCAACCAAGAAAATGTTTTCAA
. : . : . : . : . : . :
rJMSF009A05+ GGTATGTGACCAACCCCATCCCCTTCACGTGAAGAATATTGTACGCAATGTACTTGAAGG
rJMSF039B15+ GGTATGTGACCAACCCCATCCCCTTCACGTGAAGAATATTGTACGCAATGTACTTGAAGG
rJMFF044F15+ CAACCCCATCCCCTTCACGTGAAGAATATTGTACGCAATGTACTTGAAGG
____________________________________________________________
consensus GGTATGTGACCAACCCCATCCCCTTCACGTGAAGAATATTGTACGCAATGTACTTGAAGG
. : . : . : . : . : . :
rJMSF009A05+ GAAATTTGACGATGCTTGTGTGGGTTTAAAGGCGCTCTATGATATGGGCTATTCTCCCAC
rJMSF039B15+ GAAATTTGACGATGCTTGTGTGGGTTTAAAGGCGCTCTATGATATGGGCTATTCTCCCAC
rJMFF044F15+ GAAATTTGACGATGCTTGTGTGGGTTTAAAGGCGCTCTATGATATGGGCTATTCTCCCAC
rJMFF050B20+ ATGATATGGGCTATTCTCCCAC
____________________________________________________________
consensus GAAATTTGACGATGCTTGTGTGGGTTTAAAGGCGCTCTATGATATGGGCTATTCTCCCAC
. : . : . : . : . : . :
rJMSF009A05+ TGACATTATCACAACCCTTTTCCGGATTATAAAGAACTATGATATGGCAGAATACCTGAA
rJMSF039B15+ TGACATTATCACAACCCTTTTCCGGATTATAAAGAACTATGATATGGCAGAATACCTGAA
rJMFF044F15+ TGACATTATCACAACCCTTTTCCGGATTATAAAGAACTATGATATGGCAGAATACCTGAA
rJMFF050B20+ TGACATTATCACAACCCTTTTCCGGATTATAAAGAACTATGATATGGCAGAATACCTGAA
____________________________________________________________
consensus TGACATTATCACAACCCTTTTCCGGATTATAAAGAACTATGATATGGCAGAATACCTGAA
. : . : . : . : . : . :
rJMSF009A05+ ATTGGAATTCATGAAGGAAACTGGATTTGCACATATGAGGATCTGCGATGGAGTGGGATC
rJMSF039B15+ ATTGGAATTCATGAAGGAAACTGGATTTGCACATATGAGGATCTGCGATGGAGTGGGATC
rJMFF044F15+ ATTGGAATTCATGAAGGAAACTGGATTTGCACATATGAGGATCTGCGATGGAGTGGGATC
rJMFF050B20+ ATTGGAATTCATGAAGGAAACTGGATTTGCACATATGAGGATCTGCGATGGAGTGGGATC
____________________________________________________________
consensus ATTGGAATTCATGAAGGAAACTGGATTTGCACATATGAGGATCTGCGATGGAGTGGGATC
. : . : . : . : . : . :
rJMSF009A05+ GTATCTTCAGCTATGCGGTCTGCTAGCCAAACTTGCATTGGCTCGGGAGACTGCAAAGGC
rJMSF039B15+ GTATCTTCAGCTATGCGGTCTGCTAGCCAAACTTGCATTGGCTCGGGAGACTGCAAAGGC
rJMFF044F15+ GTATCTTCAGCTATGCGGTCTGCTAGCCAAACTTGCATTGGCTCGGGAGACTGCAAAGGC
rJMFF050B20+ GTATCTTCAGCTATGCGGTCTGCTAGCCAAACTTGCATTGGCTCGGGAGACTGCAAAGGC
____________________________________________________________
consensus GTATCTTCAGCTATGCGGTCTGCTAGCCAAACTTGCATTGGCTCGGGAGACTGCAAAGGC
. : . : . : . : . : . :
rJMSF009A05+ AGCATGAGAAAACACCATTGCAGTAGTAATTAGAAATTTCAAGCATTTCTTAGTAGTAAT
rJMSF039B15+ AGCATGAGAAAACACCATTGCAGTAGTAATTAGAAATTTCAAGCATTTCTTAGTAGTAAT
rJMFF044F15+ AGCATGAGAAAACACCATTGCAGTAGTAATTAGAAATTTCAAGCATTTCTTAGTAGTAAT
rJMFF050B20+ AGCATGAGAAAACACCATTGCAGTAGTAATTAGAAATTTCAAGCATTTCTTAGTAGTAAT
____________________________________________________________
consensus AGCATGAGAAAACACCATTGCAGTAGTAATTAGAAATTTCAAGCATTTCTTAGTAGTAAT
. : . : . : . : . : . :
rJMSF009A05+ TAGAAACTCATGTATGTGCCAGGACATGCAACCTTTCTAAATTGGCCAAACTTAGATTAT
rJMSF039B15+ TAGAAACTCATGTATGTGCCAGGACATGCAACCTTTCTAAATTGGCCAAACTTAGATTAT
rJMFF044F15+ TAGAAACTCATGTATGTGCCAGGACATGCAACCTTTCTAAATTGGCCAAACTTAGATTAT
rJMFF050B20+ TAGAAACTCATGTATGTGCCAGGACATGCAACCTTTCTAAATTGGCCAAACTTAGATTAT
____________________________________________________________
consensus TAGAAACTCATGTATGTGCCAGGACATGCAACCTTTCTAAATTGGCCAAACTTAGATTAT
. : . : . : . : . : . :
rJMSF009A05+ CAGGCAACATAGTTGCAC
rJMSF039B15+ CAGGCAACATAGTTGCACAAGGGTGTTGTACTGTTA
rJMFF044F15+ CAGGCAACATAGTTGCACAAGGGTGTTGTACTGTTATGTGAATCAGTGAAGCTTTGGCCT
rJMFF050B20+ CAGGCAACATAGTTGCACAAGGGTGTTGTACTGTTATGTGAATCAGTGAAGCTTTGGCCT
____________________________________________________________
consensus CAGGCAACATAGTTGCACAAGGGTGTTGTACTGTTATGTGAATCAGTGAAGCTTTGGCCT
. : . : . : . : . : . :
rJMFF044F15+ CTGCTGCACTTCTGCTCCCATCTTGAAGAAATGCTGATCATCTTTGTCTGTCTTTTGGCA
rJMFF050B20+ CTGCTGCACTTCTGCTCCCATCTTGAAGAAATGCTGATCATCTTTGTCTGTCTTTTGGCA
____________________________________________________________
consensus CTGCTGCACTTCTGCTCCCATCTTGAAGAAATGCTGATCATCTTTGTCTGTCTTTTGGCA
. : . : . : . : . : . :
rJMFF044F15+ TTTAACAATAGGCCAATTGCCTCTGTTTATGTTCAATTCTGGTGCTCAAATGCAAAAGTC
rJMFF050B20+ TTTAACAATAGGCCAATTGCCTCTGTTTATGTTCAATTCTGGTGCTCAAATGCAAAAGTC
____________________________________________________________
consensus TTTAACAATAGGCCAATTGCCTCTGTTTATGTTCAATTCTGGTGCTCAAATGCAAAAGTC
. : . : . : . : . : . :
rJMFF044F15+ CATAGCTTTTTGCAAAAAT
rJMFF050B20+ CATAGCTTTTTGCAAAAATAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus CATAGCTTTTTGCAAAAATAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG