| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012K05 | Sequence | 603 | 005254 (5) | ref|XP_006364261.1| | 132 | PREDICTED: uncharacterized protein LOC102591205 [Solanum tuberosum] | 743 | 012469 (4) | gb|KDO67099.1| | 3e-106 | hypothetical protein CISIN_1g0075872mg, partial [Citrus sinensis] gb|KDO67100.1| |
| JMFF049F22 | Sequence | 610 | 005254 (5) | ref|XP_006364261.1| | 139 | PREDICTED: uncharacterized protein LOC102591205 [Solanum tuberosum] | 542 | 012469 (4) | ref|XP_006364261.1| | 179 | PREDICTED: uncharacterized protein LOC102591205 [Solanum tuberosum] |
| JMSF029B08 | Sequence | 647 | 005254 (5) | ref|XP_006364261.1| | 129 | PREDICTED: uncharacterized protein LOC102591205 [Solanum tuberosum] | 699 | 012469 (4) | gb|KDO67099.1| | 3e-105 | hypothetical protein CISIN_1g0075872mg, partial [Citrus sinensis] gb|KDO67100.1| |
| JMSF042C21 | Sequence | 771 | 005254 (5) | ref|XP_009627832.1| | 197 | PREDICTED: uncharacterized protein LOC104118315 [Nicotiana tomentosiformis] | 746 | 012469 (4) | gb|KDO67099.1| | 1e-111 | hypothetical protein CISIN_1g0075872mg, partial [Citrus sinensis] gb|KDO67100.1| |
This contig is upended
. : . : . : . : . : . :
rJMSF042C21+ CCC
____________________________________________________________
consensus CCC
. : . : . : . : . : . :
rJMSF042C21+ GGATGATCCACCATTGGATCCANTCCTTGTACATACATNGACTATTCGTTTTGAGCCANG
rJMSF029B08+ G
rJMFF012K05+ G
____________________________________________________________
consensus GGATGATCCACCATTGGATCCANTCCTTGTACATACATNGACTATTCGTTTTGAGCCANG
. : . : . : . : . : . :
rJMSF042C21+ AAGACAGAGATCAATAGAAGGACCTGATGGGGTGCAGCAAGACCTGAGAAGCTTTAAACT
rJMSF029B08+ AAGACAGAGATCAATAGAAGGACCTGATGGGGTGCAGCAAGACCTGAGAAGCTTTAAACT
rJMFF012K05+ AAGACAGAGATCAATAGAAGGACCTGATGGGGTGCAGCAAGACCTGAGAAGCTTTAAACT
____________________________________________________________
consensus AAGACAGAGATCAATAGAAGGACCTGATGGGGTGCAGCAAGACCTGAGAAGCTTTAAACT
. : . : . : . : . : . :
rJMSF042C21+ AATTTTGGAATATATTAAAGCANTGCCTACTGGCCAAGAAACAGACTTTGTCTTAGTATC
rJMSF029B08+ AATTTTGGAATATATTAAAGCATTGCCTACTGGCCAAGAAACAGACTTTGTCTTAGTATC
rJMFF012K05+ AATTTTGGAATATATTAAAGCATTGCNTACTGGCCAAGAAACAGACTTTGTCTTAGTATC
____________________________________________________________
consensus AATTTTGGAATATATTAAAGCATTGCCTACTGGCCAAGAAACAGACTTTGTCTTAGTATC
. : . : . : . : . : . :
rJMSF042C21+ ATGTACAGGGTTGGGGATAGAACCTTCTCGAAGGGAGCAAGTGTTGAAAGCCAAGCGGGC
rJMSF029B08+ ATGTACAGGGTTGGGGATAGAACCTTCTCGAAGGGAGCAAGTGTTGAAAGCCAAGCGGGC
rJMFF012K05+ ATGTACAGGGTTGGGGATAGAACCTTCTCGAAGGGAGCAAGTGTTGAAAGCCAAGCGGGC
____________________________________________________________
consensus ATGTACAGGGTTGGGGATAGAACCTTCTCGAAGGGAGCAAGTGTTGAAAGCCAAGCGGGC
. : . : . : . : . : . :
rJMSF042C21+ TGGAGAAGACTCATTGAGAAGGTCGGGCCTTGGATATACAATAATTCGCCCTGGTCCCTT
rJMSF029B08+ TGGAGAAGACTCATTGAGAAGGTCGGGCCTTGGATATACAATAATTCGCCCTGGTCCCTT
rJMFF012K05+ TGGAGAAGACTCATTGAGAAGGTCGGGCCTTGGATATACAATAATTCGCCCTGGTCCCTT
rJMFF049F22+ TT
____________________________________________________________
consensus TGGAGAAGACTCATTGAGAAGGTCGGGCCTTGGATATACAATAATTCGCCCTGGTCCCTT
. : . : . : . : . : . :
rJMSF042C21+ GATGGAAGAACCTGGTGGCCAACGTGCCCTCGTATTTGACCAAGGAAACAGAATATCTCA
rJMSF029B08+ GATGGAAGAACCTGGTGGCCAACGTGCCCTCGTATTTGACCAAGGAAACAGAATATCTCA
rJMFF012K05+ GATGGAAGAACCTGGTGGCCAACGTGCCCTCGTATTTGACCAAGGAAACAGAATATCTCA
rJMFF049F22+ GATGGAAGAACCTGGTGGCCAACGTGCCCTCGTATTTGACCAAGGAAACAGAATATCTCA
____________________________________________________________
consensus GATGGAAGAACCTGGTGGCCAACGTGCCCTCGTATTTGACCAAGGAAACAGAATATCTCA
. : . : . : . : . : . :
rJMSF042C21+ GGGAATCAGCTGTGCAGACGTTGCTGATATCTGTGTGAAGGCATTGCACGACTCAACAGC
rJMSF029B08+ GGGAATCAGCTGTGCAGACGTTGCTGATATCTGTGTGAAGGCATTGCACGACTCAACAGC
rJMFF012K05+ GGGAATCAGCTGTGCAGACGTTGCTGATATCTGTGTGAAGGCATTGCACGACTCAACAGC
rJMFF049F22+ GGGAATCAGCTGTGCAGACGTTGCTGATATCTGTGTGAAGGCATTGCACGACTCAACAGC
____________________________________________________________
consensus GGGAATCAGCTGTGCAGACGTTGCTGATATCTGTGTGAAGGCATTGCACGACTCAACAGC
. : . : . : . : . : . :
rJMSF042C21+ CCGGAATAAAAGTTTCGATGTATGCTACGAATACGTGTCTGAATCCGGGAAGGAGCTTTA
rJMSF029B08+ CCGGAATAAAAGTTTCGATGTATGCTACGAATACGTGTCTGAATCCGGGAAGGAGCTTTA
rJMFF012K05+ CCGGAATAAAAGTTTCGATGTATGCTACGAATACGTGTCTGAATCCGGGAAGGAGCTTTA
rJMFF049F22+ CCGGAATAAAAGTTTCGATGTATGCTACGAATACGTGTCTGAATCCGGGAAGGAGCTTTA
____________________________________________________________
consensus CCGGAATAAAAGTTTCGATGTATGCTACGAATACGTGTCTGAATCCGGGAAGGAGCTTTA
. : . : . : . : . : . :
rJMSF042C21+ CGAGCTGGTCGCACATTTACCCGATAAAGCCAACAACTACTTGACACCGGCACTCTCAGT
rJMSF029B08+ CGAGCTGGTCGCACATTTACCCGATAAAGCCAACAACTACTTGACACCGGCACTCTCAGT
rJMFF012K05+ CGAGCTGGTCGCACATTTACCCGATAAAGCCAACAACTACTTGACACCGGCACTCTCAGT
rJMFF049F22+ CGAGCTGGTCGCACATTTACCCGATAAAGCCAACAACTACTTGACACCGGCACTCTCAGT
____________________________________________________________
consensus CGAGCTGGTCGCACATTTACCCGATAAAGCCAACAACTACTTGACACCGGCACTCTCAGT
. : . : . : . : . : . :
rJMSF042C21+ ACTAGAGAAAAACACCTGATTCTTCCGACATTTTTCTTCCACGGGGACGTAATTGTGCTG
rJMSF029B08+ ACTAGAGAAAAACACCTGATTCTTCCGACATTTTTCTTCCACGGGGACGTAATTGTGCTG
rJMFF012K05+ ACTAGAGAAAAACACCTGATTCTTCCGACATTTTTCTTCCACGGGGACGTAATTGTGCTG
rJMFF049F22+ ACTAGAGAAAAACACCTGATTCTTCCGACATTTTTCTTCCACGGGGACGTAATTGTGCTG
____________________________________________________________
consensus ACTAGAGAAAAACACCTGATTCTTCCGACATTTTTCTTCCACGGGGACGTAATTGTGCTG
. : . : . : . : . : . :
rJMSF042C21+ TCCACCAGAGTTTTTCAACTACAGTGATGCTTTGCTAAAGGCGTCTTTACATTTTCCGTC
rJMSF029B08+ TCCACCAGAGTTTTTCAACTACAGTGATGCTTTGCTAAAGGCGTCTTTACATTTTCCGTC
rJMFF012K05+ TCCACCAGAGTTTTTCAACTACAGTGATGCTTTGCTAAAGGCGTCTTTACATTTTCCGTC
rJMFF049F22+ TCCACCAGAGTTTTTCAACTACAGTGATGCTTTGCTAAAGGCGTCTTTACATTTTCCGTC
____________________________________________________________
consensus TCCACCAGAGTTTTTCAACTACAGTGATGCTTTGCTAAAGGCGTCTTTACATTTTCCGTC
. : . : . : . : . : . :
rJMSF042C21+ ATCTTATCAAATTTGTGTATATATATATATATATATAGTTTTGCCGTGTCTTCATTTCGT
rJMSF029B08+ ATCTTATCAAATTTGTGTATATATATATATATATATAGTTTTGCCGTGTCTTCATTTCGT
rJMFF012K05+ ATCTTATCAAATTTGTGTATATATATATATATATATAGTTTTGCCGTGTCTTCATTTCGT
rJMFF049F22+ ATCTTATCAAATTTGTATATATATATATATATATATAGTTTTGTCGTGTCTTCATTTCGT
____________________________________________________________
consensus ATCTTATCAAATTTGTGTATATATATATATATATATAGTTTTGCCGTGTCTTCATTTCGT
. : . : . : . : . : . :
rJMSF042C21+ GGAAATCGTGCATACAAAATTTC
rJMSF029B08+ GGAAATCGTGCATACAAAATTTCCATGCATATATAATT
rJMFF012K05+ GGAAATCGTGCATACAAAATTTCCATGCATATATAATTTGTTACTCCGCACTAGTGGTGC
rJMFF049F22+ GGAAATCGTGCATACAAAATTTCCATGCATATATAATTTGTTACTCCGCACTAGTGGTGC
____________________________________________________________
consensus GGAAATCGTGCATACAAAATTTCCATGCATATATAATTTGTTACTCCGCACTAGTGGTGC
. : . : . : . : . : . :
rJMFF012K05+ TACATCAGTAATATC
rJMFF049F22+ TACATCAGTAATATCCTCATTTGTTAAAGAGTAAATTGACGTGACATGGCTCCGATAGAT
____________________________________________________________
consensus TACATCAGTAATATCCTCATTTGTTAAAGAGTAAATTGACGTGACATGGCTCCGATAGAT