Contig 012460:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047M22Sequence434014248dbj|BAC98494.1|5e-09AG-motif binding protein-4 [Nicotiana tabacum]430012460 (2)ref|XP_006362004.1|1e-13PREDICTED: GATA transcription factor 5-like [Solanum tuberosum]
JMFN005D05Sequence627012460 (2)ref|XP_006362004.1|2e-51PREDICTED: GATA transcription factor 5-like [Solanum tuberosum]

Alignment

This contig is upended


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JMFN005D05-                                      TACGGTTCTTCATCGCTTCCTGGTATGAGTTGT
                      ____________________________________________________________
consensus                                        TACGGTTCTTCATCGCTTCCTGGTATGAGTTGT
 
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JMFN005D05-           GCAAACCCTGTCCACGACGGCGACTTGTTTTCTAGCGTAGAAAAGCCGCCGGCGAAGAAG
                      ____________________________________________________________
consensus             GCAAACCCTGTCCACGACGGCGACTTGTTTTCTAGCGTAGAAAAGCCGCCGGCGAAGAAG
 
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JMFN005D05-           CTGAAGAGAAAGTCGTCGGTGGAGACCGGTCCAGGGTCAGGCGTGACACAGACTCTACGG
                      ____________________________________________________________
consensus             CTGAAGAGAAAGTCGTCGGTGGAGACCGGTCCAGGGTCAGGCGTGACACAGACTCTACGG
 
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JMFN005D05-           CGTTGTAGTCATTGTCAGGTTCAGAAGACTCCACAGTGGCGAACCGGTCCGATGGGTCCT
                      ____________________________________________________________
consensus             CGTTGTAGTCATTGTCAGGTTCAGAAGACTCCACAGTGGCGAACCGGTCCGATGGGTCCT
 
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JMFN005D05-           AAAACTTTGTGTAACGCTTGTGGCGTTAGGTACAAGTCCGGACGACTTTTCCCGGAGTAT
rJMFF047M22+                                                            CCCGGAGTAT
                      ____________________________________________________________
consensus             AAAACTTTGTGTAACGCTTGTGGCGTTAGGTACAAGTCCGGACGACTTTTCCCGGAGTAT
 
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JMFN005D05-           AGACCGGCTTGCAGCCCCACTTTCTCTCTAGAGATTCACTCGAATAGTCACCGGAAAGTT
rJMFF047M22+          AGACCGGCTTGCAGCCCCACTTTCTCTCTAGAGATTCACTCGAATAGTCACCGGAAAGTT
                      ____________________________________________________________
consensus             AGACCGGCTTGCAGCCCCACTTTCTCTCTAGAGATTCACTCGAATAGTCACCGGAAAGTT
 
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JMFN005D05-           TTGGAGATGCGGCGGAAGAAGGAGGATACCGAGGTTATCGACGCCGGCTCCGGCTCCGGC
rJMFF047M22+          TTGGAGATGCGGCGGAAGAAGGGGGATACCGAGGTTATCGACGCCGGCTCCGGCTCCGGC
                      ____________________________________________________________
consensus             TTGGAGATGCGGCGGAAGAAGGGGGATACCGAGGTTATCGACGCCGGCTCCGGCTCCGGC
 
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JMFN005D05-           TCGACAACCCCGGCGCTTGTGGAGAATTTTCAATAGACGCCAAGGGGGACCGGTATTGTT
rJMFF047M22+          TCGACAACCCCGGCGCTTGTGGAGAATTTTCAATAGACTCCAAGGGGGACCGGTATTGTT
                      ____________________________________________________________
consensus             TCGACAACCCCGGCGCTTGTGGAGAATTTTCAATAGACTCCAAGGGGGACCGGTATTGTT
 
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JMFN005D05-           TGGTAGGTGTAGCTAGGTGGTGCGTCACATGTGCAATAGCAAATGGTAACGGCAGTGATA
rJMFF047M22+          TGGTAGGTGTAGCTAGGTGGTGCGTCACATGTGCAATAGCAAATGGTAACGGCAGTGATA
                      ____________________________________________________________
consensus             TGGTAGGTGTAGCTAGGTGGTGCGTCACATGTGCAATAGCAAATGGTAACGGCAGTGATA
 
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JMFN005D05-           GACTTTTGACGGAGTTTAGGGAGGTTATGATTTTTACTTTTTAGTGCACAATAGTTTTTA
rJMFF047M22+          GACTTTTGACGGAGTTTAGGGAGGTTATGATTTTTACTTTTTAGTGCACAATAGTTTTTA
                      ____________________________________________________________
consensus             GACTTTTGACGGAGTTTAGGGAGGTTATGATTTTTACTTTTTAGTGCACAATAGTTTTTA
 
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JMFN005D05-           GTTTGGTTGTAATTTAGTCGCAGCTTAGTGTAACGGAGTTACGTGATGTAGTAC      
rJMFF047M22+          GTTTGGTTGTAATTTAGTCGCAGCTTAGTGTAACGGAGTTACGTGATGTAGTACTAATAT
                      ____________________________________________________________
consensus             GTTTGGTTGTAATTTAGTCGCAGCTTAGTGTAACGGAGTTACGTGATGTAGTACTAATAT
 
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rJMFF047M22+          TTAAATTGTTGTTGCCCCTAAAAAAAAAAAAAAAACTCGCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             TTAAATTGTTGTTGCCCCTAAAAAAAAAAAAAAAACTCGCCAGGGTGATCCGCCATAAGG