Contig 012458:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003I15Sequence613005885 (5)ref|XP_006341549.1|3e-60PREDICTED: T-complex protein 1 subunit delta-like [Solanum tuberosum]782012458 (3)ref|XP_009797191.1|1e-147PREDICTED: T-complex protein 1 subunit delta [Nicotiana sylvestris]
JMFF047D23Sequence612005885 (5)ref|XP_009797191.1|2e-78PREDICTED: T-complex protein 1 subunit delta [Nicotiana sylvestris]638012458 (3)gb|AAY41425.1|6e-63putative cytosolic chaperonin delta subunit [Ipomoea batatas]
JMSF045G01Sequence710005885 (5)ref|XP_009797191.1|6e-88PREDICTED: T-complex protein 1 subunit delta [Nicotiana sylvestris]819012458 (3)ref|XP_006341549.1|6e-127PREDICTED: T-complex protein 1 subunit delta-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMFF003I15+                                   AAGNCAAAGATCATGGTGATTAAAGATGTCGAGAG
                      ____________________________________________________________
consensus                                      AAGNCAAAGATCATGGTGATTAAAGATGTCGAGAG
 
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rJMFF003I15+          AGATGAAATTGAGTTCATCACAAAGACTTTGAATTGCTTGCCCATTGCAAATGTTGAGCA
rJMSF045G01+                                                       TGCAAATGTTGAGCA
                      ____________________________________________________________
consensus             AGATGAAATTGAGTTCATCACAAAGACTTTGAATTGCTTGCCCATTGCAAATGTTGAGCA
 
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rJMFF003I15+          TTTCAGGGCAGAGAAACTAGGACATGCAGATTTGGTTGAGGAGGTATCACTTGGAGATGG
rJMSF045G01+          TTTCAGGGCAGAGAAACTAGGACATGCAGATTTGGTTGAGGAGGTATCACTTGGAGATGG
                      ____________________________________________________________
consensus             TTTCAGGGCAGAGAAACTAGGACATGCAGATTTGGTTGAGGAGGTATCACTTGGAGATGG
 
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rJMFF003I15+          TGGGAAGATTGTGAAGATTACTGGAATTCAGGATATGGGTAGAACTGCATCTGTGCTGGT
rJMSF045G01+          TGGGAAGATTGTGAAGATTACTGGAATTCAGGATATGGGTAGAACTGCATCTGTGCTGGT
                      ____________________________________________________________
consensus             TGGGAAGATTGTGAAGATTACTGGAATTCAGGATATGGGTAGAACTGCATCTGTGCTGGT
 
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rJMFF003I15+          TCGAGGGTCCAATCAGTTGGTTATTGATGAAGCTGAGAGGAGTTTGCACGATGCCTTGTG
rJMSF045G01+          TCGAGGGTCCAATCAGTTGGTTATTGATGAAGCTGAGAGGAGTTTGCACGATGCCTTGTG
                      ____________________________________________________________
consensus             TCGAGGGTCCAATCAGTTGGTTATTGATGAAGCTGAGAGGAGTTTGCACGATGCCTTGTG
 
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rJMFF003I15+          TGTTGTTAGATGTTTGGTGAGTAAGAGGTTCTTGATTGCAGGTGGTGGGGCACCGGAGAT
rJMSF045G01+          TGTTGTTAGATGTTTGGTGAGTAAGAGGTTCTTGATTGCAGGTGGTGGGGCACCGGAGAT
                      ____________________________________________________________
consensus             TGTTGTTAGATGTTTGGTGAGTAAGAGGTTCTTGATTGCAGGTGGTGGGGCACCGGAGAT
 
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rJMFF003I15+          AGAGCTTTCAAGACAGTTGGGTGCATGGGCAAAGGTTTTACAAGGGATGGAGGGTTACTG
rJMSF045G01+          AGAGCTTTCAAGACAGTTGGGTGCATGGGCAAAGGTTTTACAAGGGATGGAGGGTTACTG
rJMFF047D23+                                GCATGGGCAAAGGTTTTACAAGGGATGGAGGGTTACTG
                      ____________________________________________________________
consensus             AGAGCTTTCAAGACAGTTGGGTGCATGGGCAAAGGTTTTACAAGGGATGGAGGGTTACTG
 
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rJMFF003I15+          TGTGAAATCATTTGCTGAATCTCTTGAGGTTATTCCTTATACATTAGCTGAGAATGCTGG
rJMSF045G01+          TGTGAAATCATTTGCTGAATCTCTTGAGGTTATTCCTTATACATTAGCTGAGAATGCTGG
rJMFF047D23+          TGTGAAATCATTTGCTGAATCTCTTGAGGTTATTCCTTATACATTAGCTGAGAATGCTGG
                      ____________________________________________________________
consensus             TGTGAAATCATTTGCTGAATCTCTTGAGGTTATTCCTTATACATTAGCTGAGAATGCTGG
 
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rJMFF003I15+          ACTGAACCCTATAACTATTGTGACCGAGTTAAGGAATAGGCATGCACAGGGTGAGATCAA
rJMSF045G01+          ACTGAACCCTATAACTATTGTGACCGAGTTAAGGAATAGGCATGCACAGGGTGAGATCAA
rJMFF047D23+          ACTGAACCCTATAACTATTGTGACCGAGTTAAGGAATAGGCATGCACAGGGTGAGATCAA
                      ____________________________________________________________
consensus             ACTGAACCCTATAACTATTGTGACCGAGTTAAGGAATAGGCATGCACAGGGTGAGATCAA
 
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rJMFF003I15+          TGCTGGGATCAATGTGAGGAAGGGGCAGATCACTAACATTTTGGAGGAGAATGTAGTGCA
rJMSF045G01+          TGCTGGGATCAATGTGAGGAAGGGGCAGATCACTAACATTTTGGAGGAGAATGTAGTGCA
rJMFF047D23+          TGCTGGGATCAATGTGAGGAAGGGGCAGATCACTAACATTTTGGAGGAGAATGTAGTGCA
                      ____________________________________________________________
consensus             TGCTGGGATCAATGTGAGGAAGGGGCAGATCACTAACATTTTGGAGGAGAATGTAGTGCA
 
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rJMFF003I15+          GCCACTCCTTGTGAGCACAAGTGCGATTTCCTTGGCCACTGAATGTGTGCGAATGATTTT
rJMSF045G01+          GCCACTCCTTGTGAGCACAAGTGCGATTTCCTTGGCCACTGAATGTGTGCGAATGATTTT
rJMFF047D23+          GCCACTCCTTGTGAGCACAAGTGCGATTTCCTTGGCCACTGAATGTGTGCGAATGATTTT
                      ____________________________________________________________
consensus             GCCACTCCTTGTGAGCACAAGTGCGATTTCCTTGGCCACTGAATGTGTGCGAATGATTTT
 
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rJMFF003I15+          GAAAATCGATGATATTGTTACTGTGAGGTAGATTGGATTGTACTTGAAAGTGGTGGACAA
rJMSF045G01+          GAAAATCGATGATATTGTTACTGTGAGGTAGATTGGATTGTACTTGAAAGTGGTGGACAA
rJMFF047D23+          GAAAATCGATGATATTGTTACTGTGAGGTAGATTGGATTGTACTTGAAAGTGGTGGACAA
                      ____________________________________________________________
consensus             GAAAATCGATGATATTGTTACTGTGAGGTAGATTGGATTGTACTTGAAAGTGGTGGACAA
 
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rJMFF003I15+          AGAGATAAGTTTTTCTGGTGTCTTTCTATTATTACTTGTGTGTTAAACTTTTAAATGTTT
rJMSF045G01+          AGAGATAAGTTTTTCTGGTGTCTTTCTATTATTACTTGTGTGTTAAACTTTTAAATGTTT
rJMFF047D23+          AGAGATAAGTTTTTCTGGTGTCTTTCTATTATTACTTGTGTGTTAAACTTTTAAATGTTT
                      ____________________________________________________________
consensus             AGAGATAAGTTTTTCTGGTGTCTTTCTATTATTACTTGTGTGTTAAACTTTTAAATGTTT
 
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rJMFF003I15+          CTTTGTTGAACTTGAGATCGGTGCTCT                                 
rJMSF045G01+          CTTTGTTGAACTTGAGATCGGTGCTCTGTTGGTTAATTTTACATAGTTGCTTCCTAGAAT
rJMFF047D23+          CTTTGTTGAACTTGAGATCGGTGCTCTGTTGGTTAATTTTACATAGTTGCTTCCTAGAAT
                      ____________________________________________________________
consensus             CTTTGTTGAACTTGAGATCGGTGCTCTGTTGGTTAATTTTACATAGTTGCTTCCTAGAAT
 
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rJMSF045G01+          CTTTCGCTTGGTTGAGTGTGTAGTTTTAACGTATGGTTCTGATATTCATACAGCTTTGAA
rJMFF047D23+          CTTTCGCTTGGTTGAGTGTGTAGTTTTAACGTATGGTTCTGATATTCATACAGCTTTGAA
                      ____________________________________________________________
consensus             CTTTCGCTTGGTTGAGTGTGTAGTTTTAACGTATGGTTCTGATATTCATACAGCTTTGAA
 
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rJMSF045G01+          TTAGTTCTTTA                                                 
rJMFF047D23+          TTAGTTCTTTAGCTGTACGATTTATGTTTATTTAATCAAGTTTCTGGTTTATGAAGTCTG
                      ____________________________________________________________
consensus             TTAGTTCTTTAGCTGTACGATTTATGTTTATTTAATCAAGTTTCTGGTTTATGAAGTCTG
 
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rJMFF047D23+          AAACCAGTATTTCTTGGCCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             AAACCAGTATTTCTTGGCCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG