Contig 012453:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035J19Sequence552003280 (3)ref|XP_007160953.1|5e-47hypothetical protein PHAVU_001G031200g [Phaseolus vulgaris] gb|ESW32947.1| hypot671012453 (4)ref|XP_002285467.2|3e-13PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Vitis vinifer
JMFF046I15Sequence625003280 (3)ref|XP_007136788.1|2e-41hypothetical protein PHAVU_009G074300g [Phaseolus vulgaris] gb|ESW08782.1| hypot600012453 (4)gb|KJB63989.1|2e-10hypothetical protein B456_010G028100 [Gossypium raimondii]
JMFF048J15Sequence406003280 (3)ref|XP_006581282.1|2e-05PREDICTED: AP2-like ethylene-responsive transcription factor ANT-like [Glycine 276012453 (4)
JMSF016C15Sequence433017798796012453 (4)ref|XP_002510048.1|4e-38conserved hypothetical protein [Ricinus communis] gb|EEF52235.1| conserved hypot

Alignment

This contig is upended


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rJMSF016C15+                                 CTCGGGACCTTCAGCACCCAAGAAGGAAGCTGCAGAA
                      ____________________________________________________________
consensus                                    CTCGGGACCTTCAGCACCCAAGAAGGAAGCTGCAGAA
 
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rJMSF016C15+          GCTTATGACATTGCTGCNATCAAATTCCGTGGCATTAGTGCTGTCACAAACTTTGACATT
                      ____________________________________________________________
consensus             GCTTATGACATTGCTGCNATCAAATTCCGTGGCATTAGTGCTGTCACAAACTTTGACATT
 
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rJMSF016C15+          TCCAGATATGACGTGGACAAAATCTTGGCGAGCAATTCTCCGGCGGCCGGAGAATTATGC
rJMFF035J19+                                                                 TATGC
                      ____________________________________________________________
consensus             TCCAGATATGACGTGGACAAAATCTTGGCGAGCAATTCTCCGGCGGCCGGAGAATTATGC
 
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rJMSF016C15+          CGGCGAAACAAAGAAG-CCGCCGTGGAGTATAATGACATGGTTGGTCATCAGGAAAATAA
rJMFF035J19+          CGGCGAAACAAAGAAGCCCGCCGTGGAGTATAATGACATGGTTGGTCATCAGGAAAATAA
                      ____________________________________________________________
consensus             CGGCGAAACAAAGAAGCCCGCCGTGGAGTATAATGACATGGTTGGTCATCAGGAAAATAA
 
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rJMSF016C15+          CAGTAGTACTACTGGGACTGTTTCGGACTGGAAAATGGCATTGTATCAGGCGCCGCCGCA
rJMFF035J19+          CAGTAGTACTACTGGGACTGTTTCGGACTGGAAAATGGCATTGTATCAGGCGCCGCCGCA
rJMFF046I15+                                                                    CA
                      ____________________________________________________________
consensus             CAGTAGTACTACTGGGACTGTTTCGGACTGGAAAATGGCATTGTATCAGGCGCCGCCGCA
 
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rJMSF016C15+          GCAGCAAGAAGAACAGAATGCATGTTTTGAATCAAATCAGCAAAAACCCATCTTCTCAAT
rJMFF035J19+          GCAGCAAGAAGAACAGAATGCATGTTTTGAATCAAATCAGCAAAAACCCATCTTCTCAAT
rJMFF046I15+          GCAGCAAGAAGAACAGAATGCATG-TTTGAATCAAATCAGCAAAAACCCATCTTCTCAAT
                      ____________________________________________________________
consensus             GCAGCAAGAAGAACAGAATGCATGTTTTGAATCAAATCAGCAAAAACCCATCTTCTCAAT
 
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rJMSF016C15+          GGCGGTGCAGAATCTGATAGGGATGGATTCATCAATAATCCCCTCGGTTGAGACCGCCAT
rJMFF035J19+          GGCGGTGCAGAATCTGATAGGGATGGATTCATCAATAATCCCCTCGGTTGAGACCGCCAT
rJMFF046I15+          GGCGGTGCAGAATCTGATAGGGATGGATTCATCAATAATCCCCTCGGTTGAGACCGCCAT
                      ____________________________________________________________
consensus             GGCGGTGCAGAATCTGATAGGGATGGATTCATCAATAATCCCCTCGGTTGAGACCGCCAT
 
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rJMSF016C15+          TAACGAACCAAACAAGCTCAGCACCACCCATTTCTCCAACCCATCCTCCCTCGTCAGCAG
rJMFF035J19+          TAACGAACCAAACAAGCTCAGCACCACCCATTTCTCCAACCCATCCTCCCTCGTCAGCAG
rJMFF046I15+          TAACGAACCAAACAAGCTCAGCACCACCCATTTCTCCAACCCATCCTCCCTCGTCAGCAG
                      ____________________________________________________________
consensus             TAACGAACCAAACAAGCTCAGCACCACCCATTTCTCCAACCCATCCTCCCTCGTCAGCAG
 
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rJMSF016C15+          CCTGAGCAACTCCAGAGAAGCCAGCCCGGAATCAATGGCGTTCGGCGGCGCAAAGCCGAC
rJMFF035J19+          CCTGAGCAACTCCAGAGAAGCCAGCCCGGAATCAATGGCGTTCGGCGGCGCAAAGCCGAC
rJMFF046I15+          CCTGAGCAACTCCAGAGAAGCCAGCCCGGAATCAATGGCGTTCGGCGGCGCAAAGCCGAC
                      ____________________________________________________________
consensus             CCTGAGCAACTCCAGAGAAGCCAGCCCGGAATCAATGGCGTTCGGCGGCGCAAAGCCGAC
 
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rJMSF016C15+          ACTGGAAACCAAATTCTTGATTCCCACGACAAACAACGTACGACGGTCGCCTATGGATAT
rJMFF035J19+          ACTGGAAACCAAATTCTTGATTCCCACGACAAACAACGTACGACGGTCGCCTATGGATAT
rJMFF048J15+                                                        TCGCCTATGGATAT
rJMFF046I15+          ACTGGAAACCAAATTCTTGATTCCCACGACAAACAACGTACGACGGTCGCCTATGGATAT
                      ____________________________________________________________
consensus             ACTGGAAACCAAATTCTTGATTCCCACGACAAACAACGTACGACGGTCGCCTATGGATAT
 
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rJMSF016C15+          CCCACTGTCCATGGCTCACTTTCCACTGTTCGCCGCCTGGAATGACAACTCTTAAAACTT
rJMFF035J19+          CCCACTGTCCATGGCTCACCTTCCACTGTTCGCCGCCTGGAATGACAACTCTTAAAACTT
rJMFF048J15+          CCCACTGTCCATGGCTCACCTTCCACTGTTCGCCGCCTGGAATGACAACTCTTAAAACTT
rJMFF046I15+          CCCACTGTCCATGGCTCACCTTCCACTGTTCGCCGCCTGGAATGACAACTCTTAAAACTT
                      ____________________________________________________________
consensus             CCCACTGTCCATGGCTCACCTTCCACTGTTCGCCGCCTGGAATGACAACTCTTAAAACTT
 
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rJMSF016C15+          CCCATACTTTCTGTTAACACGTGAAAGACTGAAAGCTAGATTCTTGCATGGAAACAGGAA
rJMFF035J19+          CCCATACTTTCTGTTAACACGTGAAAGACTGAAAGCTAGATTCTTGCATGGAAACAGGAA
rJMFF048J15+          CCCATACTTTCTGTTAACACGTGAAAGACTGAAAGCTAGATTCTCTCATGGAAACAGGAA
rJMFF046I15+          CCCATACTTTCTGTTAACACGTGAAAGACTGAAAGCTAGATTCTTGCATGGAAACAGGAA
                      ____________________________________________________________
consensus             CCCATACTTTCTGTTAACACGTGAAAGACTGAAAGCTAGATTCTTGCATGGAAACAGGAA
 
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rJMSF016C15+          ATCAACAGGACGACGTA-GGAATTTACGTACTACAATCACGAAATGAATTACGACCTAGA
rJMFF035J19+          ATCAACAGGACGACGTA-GGAATTTACGTACTACAATCACGAAATGAATTACGACCTAGA
rJMFF048J15+          ATCAACTGGACGACGTATGGTATTTACGTACTACAATCACGAAATGAATTACGACCTAGA
rJMFF046I15+          ATCAACAGGACGACGTA-GGAATTTACGTACTACAATCACGAAATGAATTACGACCTAGA
                      ____________________________________________________________
consensus             ATCAACAGGACGACGTA-GGAATTTACGTACTACAATCACGAAATGAATTACGACCTAGA
 
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rJMSF016C15+          TTGTCTGTAACTTAGTTTTGGATT                                    
rJMFF035J19+          TTGTCTGTAACTTAGTTTTGGATTCTGGGGTATACTGCCATTTAGATTCTGC        
rJMFF048J15+          TTGTCTGTAACTTAGTTTTGGATTCTGGGGTATACTGCCATTTAGACTCTGC        
rJMFF046I15+          TTGTCTGTAACTTAGTTTTGGATTCTGGGGTATACTGCCATTTAGATTCTGCAATGAAAT
                      ____________________________________________________________
consensus             TTGTCTGTAACTTAGTTTTGGATTCTGGGGTATACTGCCATTTAGATTCTGCAATGAAAT
 
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rJMFF046I15+          GAAATCAAATATTTTCTGCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus             GAAATCAAATATTTTCTGCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG