Contig 012444:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF017G04Sequence327012444 (4)ref|XP_006354002.1|3e-51PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Solanum t
JMFF045N18Sequence627003787 (5)ref|XP_010261260.1|4e-26PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Nelumbo n597012444 (4)ref|XP_006354002.1|1e-96PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Solanum t
JMSF029F20Sequence633003787 (5)ref|XP_004237892.1|4e-38PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Solanum lycope739012444 (4)ref|XP_006354002.1|6e-132PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Solanum t
JMSF036M03Sequence661003787 (5)ref|XP_004237892.1|8e-33PREDICTED: uncharacterized WD repeat-containing protein C2A9.03 [Solanum lycope660012444 (4)ref|XP_002307391.2|5e-123hypothetical protein POPTR_0005s16680g [Populus trichocarpa] gb|EEE94387.2| hypo

Alignment

This contig is upended


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rJMSF029F20+                                               GGTTTTCAAGGAGAGNTCATTTG
                      ____________________________________________________________
consensus                                                  GGTTTTCAAGGAGAGNTCATTTG
 
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rJMSF036M03+                           CTGGCGTTTCCTTTTGCACTAAACTTACAACGGGGGAGAACGC
rJMSF029F20+          CAAGCACCTNAACAANCCTGGCGTTTCCTTTTGCACTAAACTTACAACGGGGGAGAACGC
                      ____________________________________________________________
consensus             CAAGCACCTNAACAANCCTGGCGTTTCCTTTTGCACTAAACTTACAACGGGGGAGAACGC
 
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rJMSF036M03+          TATAACTAACACGGTGGACATTTGCCATGCACCAAATGGCTCGGTGAAGGTTATGGCTGC
rJMSF029F20+          TATAACTAACACGGTGGACATTTGCCATGCACCAAATGGCTCGGTGAAGGTTATGGCTGC
                      ____________________________________________________________
consensus             TATAACTAACACGGTGGACATTTGCCATGCACCAAATGGCTCGGTGAAGGTTATGGCTGC
 
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rJMSF036M03+          GAATAATGATGCTCAAGTTAGAGTATTTGATGCCAACAACTTCGCCCGTCTTAATTGTTT
rJMSF029F20+          GAATAATGATGCTCAAGTTAGAGTATTTGATGCCAACAACTTCGCCCGTCTTAATTGTTT
                      ____________________________________________________________
consensus             GAATAATGATGCTCAAGTTAGAGTATTTGATGCCAACAACTTCGCCCGTCTTAATTGTTT
 
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rJMSF036M03+          CACATTCCCTTGGTCTGTGAATAATATCTCTGCCAGCCCAGACGGTAAAATGCTTACTGT
rJMSF029F20+          CACATTCCCTTGGTCTGTGAATAATATCTCTGCCAGCCCAGACGGTAAAATGCTTACTGT
rJMFF045N18+             ATTCCCTTGGTCTGTGAATAATATCTCTGCCAGCCCAGACGGTAAAATGCTTACTGT
                      ____________________________________________________________
consensus             CACATTCCCTTGGTCTGTGAATAATATCTCTGCCAGCCCAGACGGTAAAATGCTTACTGT
 
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rJMSF036M03+          AGTTGGAGACGATCCCGATTGTCTACTTGCTGATGCTGAATCAGGAAAGGTAATTGCCAA
rJMSF029F20+          AGTTGGAGACGATCCCGATTGTCTACTTGCTGATGCTGAATCAGGAAAGGTAATTGCCAA
rJMFF045N18+          AGTTGGAGACGATCCCGATTGTCTACTTGCTGATGCTGAATCAGGAAAGGTAATTGCCAA
                      ____________________________________________________________
consensus             AGTTGGAGACGATCCCGATTGTCTACTTGCTGATGCTGAATCAGGAAAGGTAATTGCCAA
 
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rJMSF036M03+          CCTTAAAGGTCACCTAGACTATTCATTTGCTTCGGCCTGGCACCCAAATGGTCAAATTTT
rJMSF029F20+          CCTTAAAGGTCACCTAGACTATTCATTTGCTTCGGCCTGGCACCCAAATGGTCAAATTTT
rJMFF045N18+          CCTTAAAGGTCACCTAGACTATTCATTTGCTTCGGCCTGGCACCCAAATGGTCAAATTTT
                      ____________________________________________________________
consensus             CCTTAAAGGTCACCTAGACTATTCATTTGCTTCGGCCTGGCACCCAAATGGTCAAATTTT
 
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rJMSF036M03+          TGCCACCGGGAACCAAGACACCACTTGCAGATTATGGGACGTCAGGAACCTGTCACGATC
rJMFF017G04+                              CCACTTGCAGATTATGGGACGTCAGGANCCTGTCACGATC
rJMSF029F20+          TGCCACCGGGAACCAAGACACCACTTGCAGATTATGGGACGTCAGGAACCTGTCACGATC
rJMFF045N18+          TGCCACCGGGAACCAAGACACCACTTGCAGATTATGGGACGTCAGGAACCTGTCACGATC
                      ____________________________________________________________
consensus             TGCCACCGGGAACCAAGACACCACTTGCAGATTATGGGACGTCAGGAACCTGTCACGATC
 
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rJMSF036M03+          TTTGGCCATTCTCAATGGAAGAATGGGCGCAATACGTGCAATCCAATTCAGTCCAGACGG
rJMFF017G04+          TTTGGCCATTCTCAATGGAAGAATGGGCGCAATACGTGCAATCCAATTCAGTCCAGACGG
rJMSF029F20+          TTTGGCCATTCTCAATGGAAGAATGGGCGCAATACGTGCAATCCAATTCAGTCCAGACGG
rJMFF045N18+          TTTGGCCATTCTCAATGGAAGAATGGGCGCAATACGTGCAATCCAATTCAGTCCAGACGG
                      ____________________________________________________________
consensus             TTTGGCCATTCTCAATGGAAGAATGGGCGCAATACGTGCAATCCAATTCAGTCCAGACGG
 
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rJMSF036M03+          CCGGTTCTTGGGCATGGCTGAACCAGCCGATTTCGTGCACATATTCGACACCCAGTCCGA
rJMFF017G04+          CCGGTTNTTGGGCATGGCTGAACCAGCCGATTTCGTGCACATATTCGACACCCAGTCCGA
rJMSF029F20+          CCGGTTCTTGGGCATGGCTGAACCAGCCGATTTCGTGCACATATTCGACACCCAGTCCGA
rJMFF045N18+          CCGGTTCTTGGGCATGGCTGAACCAGCCGATTTCGTGCACATATTCGACACCCAGTCCGA
                      ____________________________________________________________
consensus             CCGGTTCTTGGGCATGGCTGAACCAGCCGATTTCGTGCACATATTCGACACCCAGTCCGA
 
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rJMSF036M03+          CTATGTCACCTGCCAGGAGATCGACTTATTCGGTGAAATCGCCGGGATCTCCTTCAGCCC
rJMFF017G04+          CTATGTCACCTGCCAGGAGATNGACTTATTCGGTGAAATCGCCGGGATCTCCTTCAGCCC
rJMSF029F20+          CTATGTCACCTGCCAGGAGATCGACTTATTCGGTGAAATCGCCGGGATCTCCTTCAGCCC
rJMFF045N18+          CTATGTCACCTGCCAGGAGATCGACTTATTCGGTGAAATCGCCGGGATCTCCTTCAGCCC
                      ____________________________________________________________
consensus             CTATGTCACCTGCCAGGAGATCGACTTATTCGGTGAAATCGCCGGGATCTCCTTCAGCCC
 
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rJMSF036M03+          CGACACTGAAGCTCTGTTCATCGGAATTTCAGACAGAACATACGGGAGCTTAATAGAGTT
rJMFF017G04+          CGACACTGAAGCTCTGTTCATCGGAATTTCAGACAGAACATACGGGAGCTTAATAGAGTT
rJMSF029F20+          CGACACTGAAGCTCTGTTCATCGGAATTTCAGACAGAACATACGGGAGCTTAATAGAGTT
rJMFF045N18+          CGACACTGAAGCTCTGTTCATCGGAATTTCAGACAGAACATACGGGAGCTTAATAGAGTT
                      ____________________________________________________________
consensus             CGACACTGAAGCTCTGTTCATCGGAATTTCAGACAGAACATACGGGAGCTTAATAGAGTT
 
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rJMSF036M03+          CAAACGCAGAAACTATA                                           
rJMFF017G04+          CAAACGCAGAAACTATAATAATACCTATCTAGACTTCCT                     
rJMSF029F20+          CAAACGCAGAAACTATAATAATACCTATCTAGACTTCCTCTAATGCCGTGGTCCTT    
rJMFF045N18+          CAAACGCAGAAACTATAATAATACCTATCTAGACTTCCTCTAATGCCGTGGTCCTTTCAA
                      ____________________________________________________________
consensus             CAAACGCAGAAACTATAATAATACCTATCTAGACTTCCTCTAATGCCGTGGTCCTTTCAA
 
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rJMFF045N18+          CATGTTATCAACGTTGCCATTTTTTTCXXXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGT
                      ____________________________________________________________
consensus             CATGTTATCAACGTTGCCATTTTTTTCNNNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGT