Contig 012421:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043L04Sequence631012421 (4)ref|XP_008372485.1|1e-112PREDICTED: ER lumen protein retaining receptor [Malus domestica]530012421 (4)ref|XP_011073801.1|1e-69PREDICTED: ER lumen protein-retaining receptor-like [Sesamum indicum]
JMSF046F24Sequence736012421 (4)ref|XP_011073801.1|1e-135PREDICTED: ER lumen protein-retaining receptor-like [Sesamum indicum]808012421 (4)ref|XP_011073801.1|1e-134PREDICTED: ER lumen protein-retaining receptor-like [Sesamum indicum]

Alignment

This contig is upended


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JMFF043L04-                                                          GTTTCTGGGCATT
JMSF046F24-                                         GGGGTTCAGAACAAGACGTTTCTGGGCATT
                      ____________________________________________________________
consensus                                           GGGGTTCAGAACAAGACGTTTCTGGGCATT
 
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JMFF043L04-           TTTCTGGTCGATCCAGCGAAGTGAAAGAGCTGAAGAGGGGTTTTCAGAAACAACGCGAAG
JMSF046F24-           TTTCTGGTCGATCCAGCGAAGTGAAAGAGCTGAAGAGGGGTTTTCAGAAACAACGCGAAG
rJMSF046F24+                                                                  GAAG
                      ____________________________________________________________
consensus             TTTCTGGTCGATCCAGCGAAGTGAAAGAGCTGAAGAGGGGTTTTCAGAAACAACGCGAAG
 
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JMFF043L04-           ATGAATATATTCAGATTAGCAGGGGACATGACCCATTTGGCCAGCGTGCTAGTTTTGCTT
JMSF046F24-           ATGAATATATTCAGATTAGCAGGGGACATGACCCATTTGGCCAGCGTGCTAGTTTTGCTT
rJMSF046F24+          ATGAATATATTCAGANTAGCGGGGGACATGACCCATTTGGCCAGCGTGCTAGTTTTGCTT
                      ____________________________________________________________
consensus             ATGAATATATTCAGATTAGCAGGGGACATGACCCATTTGGCCAGCGTGCTAGTTTTGCTT
 
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JMFF043L04-           CTCAAGATCCATACCATCAAATCTTGTGCCGGTGTTTCTCTAAAGACGCAAGAATTGTAT
JMSF046F24-           CTCAAGATCCATACCATCAAATCTTGTGCCGGTGTTTCTCTAAAGACGCAAGAATTGTAT
rJMSF046F24+          CTCAAGATCCATACCATCAAATCTTGTGCCGGTGTTTCTCTAAAGACGCAAGAATTGTAT
                      ____________________________________________________________
consensus             CTCAAGATCCATACCATCAAATCTTGTGCCGGTGTTTCTCTAAAGACGCAAGAATTGTAT
 
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JMFF043L04-           GCTATGGTTTTTGCTGCTCGCTACTTGGATATATTCACAGACTATGTCTCTCTCTATAAT
JMSF046F24-           GCTATGGTTTTTGCTGCTCGCTACTTGGATATATTCACAGACTATGTCTCTCTCTATAAT
rJMSF046F24+          GCTATGGTTTTTGCTGCTCGCTACTTGGATATATTCACAGACTATGTCTCTCTCTATAAT
                      ____________________________________________________________
consensus             GCTATGGTTTTTGCTGCTCGCTACTTGGATATATTCACAGACTATGTCTCTCTCTATAAT
 
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JMFF043L04-           ACTGTAATGAAACTGATATTCTTAGGAAGCTCTTTCTCAATTGTGTGGTACATAAGACGT
JMSF046F24-           ACTGTAATGAAACTGATATTCTTAGGAAGCTCTTTCTCAATTGTGTGGTACATAAGACGT
rJMSF046F24+          ACTGTAATGAAACTGATATTCTTAGGAAGCTCTTTCTCAATTGTGTGGTACATAAGACGT
                      ____________________________________________________________
consensus             ACTGTAATGAAACTGATATTCTTAGGAAGCTCTTTCTCAATTGTGTGGTACATAAGACGT
 
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JMFF043L04-           CACAAAATTGTTCGGAGATCATATGACAAAGACCAAGATACTTTTCGCCACCTTTTCCTT
JMSF046F24-           CACAAAATTGTTCGGAGATCATATGACAAAGACCAAGATACTTTTCGCCACCTTTTCCTT
rJMSF046F24+          CACAAAATTGTTCGGAGATCATATGACAAAGACCAAGATACTTTTCGCCACCTTTTCCTT
                      ____________________________________________________________
consensus             CACAAAATTGTTCGGAGATCATATGACAAAGACCAAGATACTTTTCGCCACCTTTTCCTT
 
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JMFF043L04-           ATCCTCCCATGTTTACTTTTGGCGCTCTTCATAAATGAGAAGTTTACCTTCAAAGAGGTT
JMSF046F24-           ATCCTCCCATGTTTACTTTTGGCGCTCTTCATAAATGAGAAGTTTACCTTCAAAGAGGTT
rJMSF046F24+          ATCCTCCCATGTTTACTTTTGGCGCTCTTCATAAATGAGAAGTTTACCTTCAAAGAGGTT
rJMFF043L04+                   TGTTTACTTTTGGCGCTCTTCATAAATGAGAAGTTTACCTTCAAAGAGGTT
                      ____________________________________________________________
consensus             ATCCTCCCATGTTTACTTTTGGCGCTCTTCATAAATGAGAAGTTTACCTTCAAAGAGGTT
 
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JMFF043L04-           ATGTGGACCTTCTCTATTTATTTGGAAGCTGTTGCCATCCTGCCTCAGCTGGTCTTGTTG
JMSF046F24-           ATGTGGACCTTCTCTATTTATTTGGAAGCTGTTGCCATCCTGCCTCAGCTGGTCTTGTTG
rJMSF046F24+          ATGTGGACCTTCTCTATTTATTTGGAAGCTGTTGCCATCCTGCCTCAGCTGGTCTTGTTG
rJMFF043L04+          ATGTGGACCTTCTCTATTTATTTGGAAGCTGTTGCCATCCTGCCTCAGCTGGTCTTGTTG
                      ____________________________________________________________
consensus             ATGTGGACCTTCTCTATTTATTTGGAAGCTGTTGCCATCCTGCCTCAGCTGGTCTTGTTG
 
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JMFF043L04-           CAGAGGACAAGAAATATTGACAACTTAACTGGCCAATATGTTTTACTCTTGGGTGCGTAT
JMSF046F24-           CAGAGGACAAGAAATATTGACAACTTAACTGGCCAATATGTTTTACTCTTGGGTGCGTAT
rJMSF046F24+          CAGAGGACAAGAAATATTGACAACTTAACTGGCCAATATGTTTTACTCTTGGGTGCGTAT
rJMFF043L04+          CAGAGGACAAGAAATATTGACAACTTAACTGGCCAATATGTTTTACTCTTGGGTGCGTAT
                      ____________________________________________________________
consensus             CAGAGGACAAGAAATATTGACAACTTAACTGGCCAATATGTTTTACTCTTGGGTGCGTAT
 
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JMFF043L04-           CGTGCCTTGTACATTTTAAACTGGATTTATCGCTACTTCACGGAGCCTCATTATGTCCAT
JMSF046F24-           CGTGCCTTGTACATTTTAAACTGGATTTATCGCTACTTCACGGAGCCTCATTATGTCCAT
rJMSF046F24+          CGTGCCTTGTACATTTTAAACTGGATTTATCGCTACTTCACGGAGCCTCATTATGTCCAT
rJMFF043L04+          CGTGCCTTGTACATTTTAAACTGGATTTATCGCTACTTCACGGAGCCTCATTATGTCCAT
                      ____________________________________________________________
consensus             CGTGCCTTGTACATTTTAAACTGGATTTATCGCTACTTCACGGAGCCTCATTATGTCCAT
 
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JMFF043L04-           TGGATAACTTGGATATC                                           
JMSF046F24-           TGGATAACTTGGATATCAGGACTTGTTCAGACATTGCTTTATGCTGATTTCTTCTATTAT
rJMSF046F24+          TGGATAACTTGGATATCAGGACTTGTTCAGACATTGCTTTATGCTGATTTCTTCTATTAT
rJMFF043L04+          TGGATAACTTGGATATCAGGACTTGTTCAGACATTGCTTTATGCTGATTTCTTCTATTAT
                      ____________________________________________________________
consensus             TGGATAACTTGGATATCAGGACTTGTTCAGACATTGCTTTATGCTGATTTCTTCTATTAT
 
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JMSF046F24-           TACTTCCAAAGCTGGAAAAATAACACAAAACTCGAGTTGCCAGCTT              
rJMSF046F24+          TACTTCCAAAGCTGGAAAAATAACACAAAACTCGAGTTGCCAGCTTGAGCCTCCAAAGTC
rJMFF043L04+          TACTTCCAAAGCTGGAAAAATAACACAAAACTCGAGTTGCCAGCTTGAGCCTCCAAAGTC
                      ____________________________________________________________
consensus             TACTTCCAAAGCTGGAAAAATAACACAAAACTCGAGTTGCCAGCTTGAGCCTCCAAAGTC
 
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rJMSF046F24+          CAAAGAAAGCATCAAATGAATTAATGTTTCAGTTTGTTACGGATGGATGGTTGCTTGATT
rJMFF043L04+          CAAAGAAAGCATCAAATGAATTAATGTTTCAGTTTGTTACGGATGGATGGTTGCTTGATT
                      ____________________________________________________________
consensus             CAAAGAAAGCATCAAATGAATTAATGTTTCAGTTTGTTACGGATGGATGGTTGCTTGATT
 
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rJMSF046F24+          TTGAACGAACATTTAGCGGCGTAGGTGAAACATAGATAGATCCATCTCTACCGACTACAT
rJMFF043L04+          TTGAACGAACATTTAGCGGCGTAGGTGAAACATAGATAGATCCATCTCTACCGACTACAT
                      ____________________________________________________________
consensus             TTGAACGAACATTTAGCGGCGTAGGTGAAACATAGATAGATCCATCTCTACCGACTACAT
 
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rJMSF046F24+          CACCATGTACAATGCAAAGCGCCA                                    
rJMFF043L04+          CA-CATGTACAATGCAAAGCGCCATGAATTCTTTAATATCATGCTTCTCTTGCTACTCCC
                      ____________________________________________________________
consensus             CACCATGTACAATGCAAAGCGCCATGAATTCTTTAATATCATGCTTCTCTTGCTACTCCC